Wall clock time and date at job start Mon Mar 30 2020 03:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36005 * 116.99887 * 2 1 4 4 C 1.38718 * 119.98271 * 0.02562 * 3 2 1 5 5 C 1.38093 * 120.02010 * 180.02562 * 4 3 2 6 6 C 1.38879 * 119.97860 * 359.67948 * 5 4 3 7 7 N 1.39942 * 120.02084 * 180.32063 * 6 5 4 8 8 C 1.38837 * 119.96287 * 0.55040 * 6 5 4 9 9 C 1.50700 * 120.01227 * 179.76615 * 8 6 5 10 10 H 1.09004 * 109.47210 * 324.72745 * 9 8 6 11 11 N 1.46899 * 109.47483 * 204.72414 * 9 8 6 12 12 C 1.50702 * 109.46869 * 84.72452 * 9 8 6 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 9 8 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 9 8 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 9 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 9 17 17 H 1.48501 * 109.47188 * 90.00793 * 16 14 12 18 18 H 1.48501 * 109.47085 * 210.00372 * 16 14 12 19 19 H 1.48498 * 109.47634 * 330.00608 * 16 14 12 20 20 C 1.38136 * 119.98262 * 359.49421 * 8 6 5 21 21 H 1.09002 * 109.47437 * 300.00051 * 1 2 3 22 22 H 1.09006 * 109.46672 * 59.99943 * 1 2 3 23 23 H 1.08992 * 109.47390 * 180.02562 * 1 2 3 24 24 H 1.08002 * 119.99082 * 0.02562 * 4 3 2 25 25 H 1.08001 * 120.00798 * 180.02562 * 5 4 3 26 26 H 0.96998 * 120.00202 * 180.22816 * 7 6 5 27 27 H 0.96996 * 119.99555 * 0.23303 * 7 6 5 28 28 H 1.00902 * 111.00292 * 176.04974 * 11 9 8 29 29 H 1.00903 * 111.00048 * 300.00270 * 11 9 8 30 30 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 31 31 H 1.07998 * 119.99735 * 180.25020 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2905 2.3750 0.0005 5 6 1.9166 3.6058 0.0000 6 6 3.3035 3.6789 0.0057 7 7 3.9388 4.9258 0.0119 8 6 4.0593 2.5143 0.0003 9 6 5.5642 2.5924 0.0011 10 1 5.8838 3.4519 -0.5882 11 7 6.1187 1.3642 -0.5839 12 6 6.0587 2.7421 1.4168 13 1 5.3537 2.7767 2.2342 14 6 7.4115 2.8285 1.6691 15 7 8.2700 2.7858 0.6737 16 14 8.0247 3.0063 3.4245 17 1 8.2544 1.6599 4.0074 18 1 9.2974 3.7713 3.4291 19 1 7.0098 3.7289 4.2326 20 6 3.4314 1.2839 -0.0001 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3634 -1.0276 0.0005 24 1 0.2120 2.3179 0.0014 25 1 1.3279 4.5113 0.0008 26 1 4.9075 4.9765 0.0125 27 1 3.4105 5.7392 0.0157 28 1 7.1238 1.4187 -0.6539 29 1 5.8365 0.5525 -0.0551 30 1 9.2217 2.8470 0.8512 31 1 4.0191 0.3778 -0.0002 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238363781.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:36 Heat of formation + Delta-G solvation = -36.301556 kcal Electronic energy + Delta-G solvation = -15075.510740 eV Core-core repulsion = 12548.875904 eV Total energy + Delta-G solvation = -2526.634836 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.91126 -38.91989 -36.30483 -34.50430 -33.48208 -30.95121 -29.27788 -27.86743 -27.41323 -24.78539 -22.76049 -21.31393 -18.68637 -18.53737 -17.92747 -17.47828 -16.63406 -16.38313 -15.91764 -15.70471 -14.86406 -14.78479 -14.34932 -13.78698 -13.70930 -13.44749 -13.01580 -12.97544 -12.71705 -12.60034 -12.26295 -11.94014 -11.80292 -11.24964 -10.71083 -10.56577 -9.53911 -9.17706 -8.15778 -7.79950 -6.34781 0.65509 0.92721 1.36240 1.39336 1.48531 2.37226 2.67018 3.06346 3.13761 3.33442 4.10938 4.15907 4.36927 4.47396 4.52197 4.74175 4.79243 4.82267 4.93890 5.15136 5.34208 5.41950 5.61629 5.66600 5.89548 5.95628 6.15083 6.65212 6.68905 6.88204 6.97355 7.12368 7.27100 7.41257 8.83774 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.033333 B = 0.008226 C = 0.007691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.798739 B = 3402.883781 C = 3639.584870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.345 6.345 3 C 0.052 3.948 4 C -0.171 4.171 5 C -0.169 4.169 6 C 0.171 3.829 7 N -0.872 5.872 8 C -0.100 4.100 9 C 0.256 3.744 10 H 0.020 0.980 11 N -0.845 5.845 12 C -0.548 4.548 13 H 0.040 0.960 14 C 0.025 3.975 15 N -0.914 5.914 16 Si 0.955 3.045 17 H -0.279 1.279 18 H -0.280 1.280 19 H -0.275 1.275 20 C -0.116 4.116 21 H 0.059 0.941 22 H 0.061 0.939 23 H 0.114 0.886 24 H 0.152 0.848 25 H 0.146 0.854 26 H 0.397 0.603 27 H 0.402 0.598 28 H 0.345 0.655 29 H 0.316 0.684 30 H 0.267 0.733 31 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.041 0.421 -0.482 13.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.260 6.260 3 C 0.006 3.994 4 C -0.190 4.190 5 C -0.192 4.192 6 C 0.066 3.934 7 N -0.413 5.413 8 C -0.105 4.105 9 C 0.146 3.854 10 H 0.038 0.962 11 N -0.374 5.374 12 C -0.587 4.587 13 H 0.059 0.941 14 C -0.175 4.175 15 N -0.554 5.554 16 Si 0.781 3.219 17 H -0.205 1.205 18 H -0.205 1.205 19 H -0.200 1.200 20 C -0.136 4.136 21 H 0.078 0.922 22 H 0.080 0.920 23 H 0.133 0.867 24 H 0.169 0.831 25 H 0.164 0.836 26 H 0.226 0.774 27 H 0.231 0.769 28 H 0.159 0.841 29 H 0.126 0.874 30 H 0.077 0.923 31 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -13.211 0.405 -1.192 13.271 hybrid contribution 1.263 0.397 1.801 2.235 sum -11.948 0.802 0.609 11.990 Atomic orbital electron populations 1.23225 0.77219 1.04962 1.01835 1.86006 1.22886 1.27023 1.90123 1.18807 0.91711 0.84904 1.03969 1.21072 1.00335 0.91007 1.06630 1.20553 0.91455 0.98553 1.08632 1.17779 0.92040 0.86285 0.97287 1.42406 1.09472 1.03958 1.85483 1.19691 0.96400 0.91622 1.02745 1.17563 0.86186 0.89959 0.91719 0.96176 1.59509 1.17307 1.04566 1.56035 1.21942 0.91811 1.51060 0.93930 0.94150 1.25662 0.96916 0.94281 1.00620 1.69835 1.02601 1.50860 1.32088 0.85613 0.77577 0.78040 0.80669 1.20518 1.20523 1.20014 1.19997 0.91666 0.97590 1.04330 0.92212 0.92010 0.86742 0.83055 0.83605 0.77370 0.76892 0.84084 0.87378 0.92339 0.86922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.81 113.37 1.11 1.58 16 2 O -0.35 -11.50 10.50 -93.60 -0.98 -12.48 16 3 C 0.05 1.92 6.69 22.49 0.15 2.07 16 4 C -0.17 -5.39 9.03 22.35 0.20 -5.19 16 5 C -0.17 -5.48 9.89 22.39 0.22 -5.26 16 6 C 0.17 6.71 6.74 38.14 0.26 6.97 16 7 N -0.87 -30.49 9.00 -51.27 -0.46 -30.95 16 8 C -0.10 -4.54 5.01 -19.75 -0.10 -4.64 16 9 C 0.26 13.02 2.37 43.42 0.10 13.13 16 10 H 0.02 1.12 6.82 -2.38 -0.02 1.10 16 11 N -0.85 -42.26 8.79 -174.95 -1.54 -43.80 16 12 C -0.55 -29.63 8.71 25.60 0.22 -29.41 16 13 H 0.04 2.27 7.74 -2.91 -0.02 2.24 16 14 C 0.03 1.36 5.38 84.66 0.46 1.82 16 15 N -0.91 -50.13 11.53 21.45 0.25 -49.88 16 16 Si 0.95 43.07 29.54 68.60 2.03 45.10 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 19 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 20 C -0.12 -5.05 9.20 22.35 0.21 -4.85 16 21 H 0.06 1.11 7.66 -2.39 -0.02 1.09 16 22 H 0.06 1.13 7.66 -2.38 -0.02 1.11 16 23 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.15 3.55 6.29 -2.91 -0.02 3.53 16 25 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 26 H 0.40 15.59 6.94 -92.71 -0.64 14.95 16 27 H 0.40 10.80 8.84 -92.71 -0.82 9.98 16 28 H 0.34 18.21 7.07 -89.69 -0.63 17.58 16 29 H 0.32 15.33 7.20 -89.69 -0.65 14.68 16 30 H 0.27 13.97 8.31 -92.70 -0.77 13.20 16 31 H 0.11 5.04 6.29 -2.91 -0.02 5.03 16 Total: -1.00 -61.46 260.52 0.58 -60.88 By element: Atomic # 1 Polarization: 56.45 SS G_CDS: -1.55 Total: 54.91 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: 2.83 Total: -23.79 kcal Atomic # 7 Polarization: -122.87 SS G_CDS: -1.75 Total: -124.62 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: -0.98 Total: -12.48 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -61.46 0.58 -60.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238363781.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.581 kcal (2) G-P(sol) polarization free energy of solvation -61.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds