Wall clock time and date at job start Mon Mar 30 2020 03:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36007 * 116.99745 * 2 1 4 4 C 1.38717 * 119.98132 * 359.97438 * 3 2 1 5 5 C 1.38092 * 120.01784 * 180.02562 * 4 3 2 6 6 C 1.38878 * 119.98011 * 359.97438 * 5 4 3 7 7 N 1.39939 * 120.01717 * 179.97438 * 6 5 4 8 8 C 1.38840 * 119.96235 * 359.73143 * 6 5 4 9 9 C 1.38124 * 119.98056 * 0.53845 * 8 6 5 10 10 C 1.50700 * 119.99232 * 179.72763 * 9 8 6 11 11 H 1.08994 * 109.47551 * 219.72814 * 10 9 8 12 12 N 1.46900 * 109.47395 * 339.73276 * 10 9 8 13 13 C 1.50702 * 109.46869 * 99.72869 * 10 9 8 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 10 9 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 10 9 16 16 N 1.31514 * 119.99985 * 180.27663 * 15 13 10 17 17 Si 1.86800 * 119.99777 * 0.28166 * 15 13 10 18 18 H 1.48498 * 109.47109 * 89.99834 * 17 15 13 19 19 H 1.48507 * 109.46754 * 209.99574 * 17 15 13 20 20 H 1.48498 * 109.47278 * 329.99405 * 17 15 13 21 21 H 1.08996 * 109.47399 * 60.00045 * 1 2 3 22 22 H 1.09005 * 109.46903 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47123 * 299.99270 * 1 2 3 24 24 H 1.07999 * 119.99310 * 0.04441 * 4 3 2 25 25 H 1.07998 * 120.00557 * 180.02562 * 5 4 3 26 26 H 0.96997 * 120.00140 * 0.02562 * 7 6 5 27 27 H 0.97004 * 120.00025 * 180.02562 * 7 6 5 28 28 H 1.08007 * 120.01188 * 180.29489 * 8 6 5 29 29 H 1.00907 * 110.99792 * 296.04461 * 12 10 9 30 30 H 1.00903 * 111.00086 * 59.99217 * 12 10 9 31 31 H 0.96996 * 119.99730 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2904 2.3750 -0.0005 5 6 1.9165 3.6058 -0.0011 6 6 3.3034 3.6789 -0.0005 7 7 3.9386 4.9258 -0.0016 8 6 4.0592 2.5143 0.0062 9 6 3.4313 1.2840 0.0011 10 6 4.2515 0.0197 0.0022 11 1 3.7891 -0.7140 -0.6580 12 7 5.6100 0.3168 -0.4712 13 6 4.3174 -0.5351 1.4018 14 1 3.8152 -0.0236 2.2097 15 6 5.0135 -1.6991 1.6499 16 7 5.0665 -2.1862 2.8704 17 14 5.8816 -2.5841 0.2526 18 1 7.2703 -2.0728 0.1297 19 1 5.9138 -4.0419 0.5343 20 1 5.1505 -2.3414 -1.0170 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 0.2120 2.3179 -0.0002 25 1 1.3278 4.5112 -0.0011 26 1 3.4104 5.7393 -0.0024 27 1 4.9073 4.9766 -0.0016 28 1 5.1378 2.5703 0.0114 29 1 5.5984 0.6296 -1.4305 30 1 6.0603 0.9952 0.1248 31 1 5.5565 -3.0048 3.0450 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238367652.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:38 Heat of formation + Delta-G solvation = -5.378313 kcal Electronic energy + Delta-G solvation = -15229.377027 eV Core-core repulsion = 12704.083124 eV Total energy + Delta-G solvation = -2525.293903 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.65316 -37.27252 -35.19513 -33.02804 -31.74867 -29.53926 -28.14689 -26.42436 -26.01820 -22.92937 -21.19695 -19.87824 -17.44942 -16.82104 -16.64641 -16.03754 -15.04037 -14.85442 -14.63353 -13.96913 -13.76175 -13.28449 -12.95709 -12.64575 -12.30486 -12.18049 -11.52536 -11.16392 -11.11306 -10.72093 -10.55232 -10.08572 -9.72094 -9.36266 -9.16981 -8.41029 -8.08873 -7.61104 -6.68833 -5.87981 -3.95410 1.90543 2.21656 3.66190 3.69499 3.83749 3.99443 4.22010 4.41278 4.76687 5.26027 5.32202 5.39359 5.49667 5.57416 5.79291 5.86220 5.93857 6.05990 6.13665 6.53282 6.57923 6.74181 6.91041 7.13766 7.29337 7.75991 7.79944 8.05550 8.15109 8.25910 8.43711 8.79957 9.12828 9.75557 11.21936 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.027216 B = 0.010573 C = 0.008588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.561205 B = 2647.538704 C = 3259.602148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.297 6.297 3 C 0.080 3.920 4 C -0.167 4.167 5 C -0.183 4.183 6 C 0.177 3.823 7 N -0.887 5.887 8 C -0.168 4.168 9 C -0.049 4.049 10 C 0.221 3.779 11 H 0.057 0.943 12 N -0.842 5.842 13 C -0.500 4.500 14 H 0.069 0.931 15 C 0.079 3.921 16 N -0.904 5.904 17 Si 0.937 3.063 18 H -0.282 1.282 19 H -0.320 1.320 20 H -0.274 1.274 21 H 0.043 0.957 22 H 0.092 0.908 23 H 0.047 0.953 24 H 0.119 0.881 25 H 0.111 0.889 26 H 0.391 0.609 27 H 0.393 0.607 28 H 0.121 0.879 29 H 0.310 0.690 30 H 0.333 0.667 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.996 11.066 -7.627 14.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.210 6.210 3 C 0.034 3.966 4 C -0.186 4.186 5 C -0.206 4.206 6 C 0.075 3.925 7 N -0.429 5.429 8 C -0.190 4.190 9 C -0.052 4.052 10 C 0.112 3.888 11 H 0.075 0.925 12 N -0.372 5.372 13 C -0.538 4.538 14 H 0.087 0.913 15 C -0.124 4.124 16 N -0.542 5.542 17 Si 0.769 3.231 18 H -0.209 1.209 19 H -0.250 1.250 20 H -0.199 1.199 21 H 0.061 0.939 22 H 0.111 0.889 23 H 0.065 0.935 24 H 0.137 0.863 25 H 0.129 0.871 26 H 0.218 0.782 27 H 0.221 0.779 28 H 0.139 0.861 29 H 0.122 0.878 30 H 0.148 0.852 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.723 9.887 -7.376 13.598 hybrid contribution -0.061 1.122 -0.584 1.266 sum -5.784 11.009 -7.959 14.765 Atomic orbital electron populations 1.22901 0.80475 1.03094 1.00066 1.86272 1.19277 1.26336 1.89118 1.18632 0.91876 0.83902 1.02213 1.20877 0.99052 0.92047 1.06653 1.20092 0.92235 0.96967 1.11279 1.17621 0.91601 0.85845 0.97438 1.42311 1.08660 1.04432 1.87472 1.20228 0.99180 0.90093 1.09525 1.20410 0.91537 0.97338 0.95948 1.18576 0.83296 0.88866 0.98038 0.92491 1.59384 1.21860 1.50944 1.04968 1.20642 1.33382 1.08605 0.91171 0.91310 1.25001 0.94999 0.96517 0.95881 1.69964 1.42172 1.21642 1.20429 0.85865 0.80337 0.74695 0.82197 1.20853 1.24999 1.19928 0.93874 0.88941 0.93469 0.86342 0.87075 0.78238 0.77946 0.86098 0.87821 0.85249 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.81 101.05 0.99 1.44 16 2 O -0.30 -6.18 9.72 -19.76 -0.19 -6.37 16 3 C 0.08 1.65 6.65 -39.24 -0.26 1.39 16 4 C -0.17 -2.85 9.03 -39.46 -0.36 -3.21 16 5 C -0.18 -2.89 9.89 -39.40 -0.39 -3.28 16 6 C 0.18 2.85 6.76 -83.70 -0.57 2.28 16 7 N -0.89 -10.59 9.10 32.44 0.30 -10.30 16 8 C -0.17 -3.10 9.09 -39.40 -0.36 -3.46 16 9 C -0.05 -1.05 5.02 -104.50 -0.52 -1.58 16 10 C 0.22 5.39 1.99 -70.02 -0.14 5.25 16 11 H 0.06 1.49 6.90 -51.93 -0.36 1.13 16 12 N -0.84 -18.13 6.26 -6.65 -0.04 -18.17 16 13 C -0.50 -14.53 9.28 -34.44 -0.32 -14.85 16 14 H 0.07 2.22 7.98 -52.49 -0.42 1.80 16 15 C 0.08 2.37 5.47 -17.82 -0.10 2.27 16 16 N -0.90 -28.64 13.96 55.43 0.77 -27.87 16 17 Si 0.94 24.69 26.04 -169.99 -4.43 20.26 16 18 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 19 H -0.32 -8.51 7.11 56.52 0.40 -8.10 16 20 H -0.27 -7.06 6.54 56.52 0.37 -6.69 16 21 H 0.04 0.54 7.66 -51.93 -0.40 0.14 16 22 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 23 H 0.05 0.64 7.66 -51.93 -0.40 0.25 16 24 H 0.12 1.69 6.29 -52.49 -0.33 1.36 16 25 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 26 H 0.39 3.74 8.84 -40.82 -0.36 3.38 16 27 H 0.39 4.11 8.84 -40.82 -0.36 3.75 16 28 H 0.12 2.06 6.25 -52.48 -0.33 1.74 16 29 H 0.31 5.76 9.06 -39.29 -0.36 5.41 16 30 H 0.33 6.81 7.28 -39.29 -0.29 6.53 16 31 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 260.10 15.07 3.92 3.92 Total: -1.00 -34.02 260.10 -5.30 -39.32 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -3.61 Total: 12.95 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -2.02 Total: -13.75 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: 1.03 Total: -56.34 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -0.19 Total: -6.37 kcal Atomic # 14 Polarization: 24.69 SS G_CDS: -4.43 Total: 20.26 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -34.02 -5.30 -39.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238367652.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.938 kcal (2) G-P(sol) polarization free energy of solvation -34.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds