Wall clock time and date at job start Mon Mar 30 2020 03:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35999 * 117.00007 * 2 1 4 4 C 1.38719 * 119.98403 * 359.97438 * 3 2 1 5 5 C 1.38087 * 120.02259 * 179.70099 * 4 3 2 6 6 C 1.38880 * 119.97848 * 0.59465 * 5 4 3 7 7 N 1.39935 * 120.02314 * 179.69980 * 6 5 4 8 8 C 1.38843 * 119.96127 * 359.42991 * 6 5 4 9 9 C 1.38134 * 119.98221 * 0.27368 * 8 6 5 10 10 C 1.50697 * 119.99238 * 180.02562 * 9 8 6 11 11 H 1.08997 * 109.46792 * 144.99816 * 10 9 8 12 12 N 1.46895 * 109.47012 * 25.00151 * 10 9 8 13 13 C 1.50700 * 109.47336 * 264.99709 * 10 9 8 14 14 H 1.07997 * 119.99425 * 0.02562 * 13 10 9 15 15 C 1.37872 * 119.99977 * 180.02562 * 13 10 9 16 16 N 1.31515 * 119.99906 * 359.97438 * 15 13 10 17 17 Si 1.86795 * 120.00049 * 180.02562 * 15 13 10 18 18 H 1.48504 * 109.47390 * 89.99849 * 17 15 13 19 19 H 1.48503 * 109.47048 * 210.00051 * 17 15 13 20 20 H 1.48503 * 109.46980 * 329.99656 * 17 15 13 21 21 H 1.09001 * 109.47533 * 59.99944 * 1 2 3 22 22 H 1.09002 * 109.47253 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47290 * 299.99732 * 1 2 3 24 24 H 1.08002 * 119.98762 * 0.02562 * 4 3 2 25 25 H 1.07999 * 120.01055 * 180.32412 * 5 4 3 26 26 H 0.97001 * 120.00577 * 179.73474 * 7 6 5 27 27 H 0.97005 * 119.99698 * 359.45412 * 7 6 5 28 28 H 1.08001 * 120.01096 * 180.29018 * 8 6 5 29 29 H 1.00904 * 111.00159 * 176.04607 * 12 10 9 30 30 H 1.00898 * 110.99898 * 299.99618 * 12 10 9 31 31 H 0.97002 * 119.99927 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2906 2.3749 -0.0005 5 6 1.9166 3.6057 0.0057 6 6 3.3035 3.6789 0.0000 7 7 3.9389 4.9257 0.0000 8 6 4.0593 2.5142 0.0001 9 6 3.4314 1.2838 0.0000 10 6 4.2515 0.0195 0.0006 11 1 3.7427 -0.7432 0.5900 12 7 5.5707 0.2920 0.5865 13 6 4.4216 -0.4696 -1.4146 14 1 3.9803 0.0803 -2.2326 15 6 5.1405 -1.6191 -1.6649 16 7 5.6783 -2.2884 -0.6687 17 14 5.3520 -2.2251 -3.4191 18 1 6.5786 -1.6272 -4.0050 19 1 5.4735 -3.7052 -3.4203 20 1 4.1718 -1.8248 -4.2268 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 0.2121 2.3179 -0.0005 25 1 1.3280 4.5112 0.0106 26 1 4.9076 4.9765 -0.0001 27 1 3.4106 5.7392 -0.0041 28 1 5.1379 2.5701 0.0004 29 1 6.1165 -0.5538 0.6575 30 1 6.0627 0.9964 0.0577 31 1 6.1838 -3.0974 -0.8448 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238368244.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:39 Heat of formation + Delta-G solvation = -36.503389 kcal Electronic energy + Delta-G solvation = -15177.466909 eV Core-core repulsion = 12650.823322 eV Total energy + Delta-G solvation = -2526.643588 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.91553 -38.52476 -36.78572 -34.42977 -33.36595 -30.86572 -29.31330 -27.94250 -27.35614 -24.81213 -22.49682 -21.55808 -18.77512 -18.55799 -17.89341 -17.32714 -16.50389 -16.32048 -16.09032 -15.52955 -15.05723 -14.78627 -14.33962 -13.80685 -13.62423 -13.44217 -13.11654 -12.86184 -12.72738 -12.41452 -12.25636 -12.04030 -11.91721 -11.16170 -10.69301 -10.49569 -9.52158 -9.15950 -8.11596 -7.84251 -6.31160 0.65702 0.93124 1.36413 1.37812 1.48891 2.39014 2.79688 3.09051 3.15050 3.24006 4.10204 4.14438 4.40478 4.43106 4.50243 4.72773 4.76710 4.84653 4.96454 5.14047 5.37205 5.53397 5.58770 5.69016 5.86688 6.01710 6.18282 6.69126 6.72532 6.92225 6.98001 7.15400 7.23668 7.43082 8.87858 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.025648 B = 0.009967 C = 0.008377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.423759 B = 2808.643291 C = 3341.634385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.342 6.342 3 C 0.042 3.958 4 C -0.161 4.161 5 C -0.180 4.180 6 C 0.178 3.822 7 N -0.870 5.870 8 C -0.164 4.164 9 C -0.052 4.052 10 C 0.255 3.745 11 H 0.007 0.993 12 N -0.841 5.841 13 C -0.543 4.543 14 H 0.039 0.961 15 C 0.018 3.982 16 N -0.918 5.918 17 Si 0.959 3.041 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.276 1.276 21 H 0.059 0.941 22 H 0.103 0.897 23 H 0.064 0.936 24 H 0.148 0.852 25 H 0.149 0.851 26 H 0.401 0.599 27 H 0.406 0.594 28 H 0.122 0.878 29 H 0.344 0.656 30 H 0.317 0.683 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.290 11.466 0.334 13.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.257 6.257 3 C -0.004 4.004 4 C -0.180 4.180 5 C -0.203 4.203 6 C 0.074 3.926 7 N -0.413 5.413 8 C -0.187 4.187 9 C -0.054 4.054 10 C 0.144 3.856 11 H 0.024 0.976 12 N -0.369 5.369 13 C -0.583 4.583 14 H 0.057 0.943 15 C -0.181 4.181 16 N -0.559 5.559 17 Si 0.785 3.215 18 H -0.197 1.197 19 H -0.205 1.205 20 H -0.201 1.201 21 H 0.078 0.922 22 H 0.121 0.879 23 H 0.082 0.918 24 H 0.165 0.835 25 H 0.167 0.833 26 H 0.230 0.770 27 H 0.236 0.764 28 H 0.140 0.860 29 H 0.158 0.842 30 H 0.128 0.872 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.543 11.295 1.046 13.622 hybrid contribution 0.572 -0.770 -1.723 1.972 sum -6.971 10.525 -0.677 12.642 Atomic orbital electron populations 1.23174 0.77989 1.04412 1.01658 1.86186 1.22187 1.27526 1.89788 1.18884 0.91813 0.84949 1.04789 1.21125 1.00231 0.91168 1.05484 1.20512 0.92236 0.97835 1.09715 1.17742 0.92034 0.86463 0.96319 1.42217 1.09351 1.03528 1.86193 1.20246 0.99559 0.90053 1.08838 1.19560 0.91402 0.96176 0.98231 1.17503 0.87263 0.88937 0.91849 0.97558 1.59535 1.06599 1.15087 1.55723 1.21896 1.33026 1.09557 0.93778 0.94305 1.25743 0.95209 0.96034 1.01115 1.69856 1.35790 1.17998 1.32215 0.85550 0.78371 0.77429 0.80189 1.19706 1.20530 1.20135 0.92222 0.87863 0.91759 0.83463 0.83305 0.76996 0.76418 0.86020 0.84213 0.87240 0.92444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.66 9.81 113.37 1.11 1.77 16 2 O -0.34 -15.15 9.63 -93.54 -0.90 -16.05 16 3 C 0.04 1.82 6.66 22.49 0.15 1.97 16 4 C -0.16 -5.43 9.03 22.35 0.20 -5.22 16 5 C -0.18 -5.42 9.89 22.39 0.22 -5.19 16 6 C 0.18 5.77 6.76 38.15 0.26 6.03 16 7 N -0.87 -19.80 9.10 -51.27 -0.47 -20.26 16 8 C -0.16 -6.67 9.11 22.39 0.20 -6.47 16 9 C -0.05 -2.48 5.00 -19.78 -0.10 -2.58 16 10 C 0.25 14.06 2.67 43.42 0.12 14.18 16 11 H 0.01 0.41 7.68 -2.39 -0.02 0.39 16 12 N -0.84 -43.11 8.79 -174.97 -1.54 -44.64 16 13 C -0.54 -31.60 8.71 25.60 0.22 -31.38 16 14 H 0.04 2.31 7.74 -2.91 -0.02 2.29 16 15 C 0.02 1.04 5.38 84.65 0.46 1.50 16 16 N -0.92 -53.52 11.54 21.45 0.25 -53.28 16 17 Si 0.96 45.04 29.54 68.60 2.03 47.07 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 20 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 21 H 0.06 1.55 7.66 -2.39 -0.02 1.53 16 22 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 23 H 0.06 1.59 7.66 -2.39 -0.02 1.57 16 24 H 0.15 3.91 6.29 -2.91 -0.02 3.89 16 25 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 26 H 0.40 8.20 8.84 -92.71 -0.82 7.38 16 27 H 0.41 6.74 8.84 -92.70 -0.82 5.92 16 28 H 0.12 4.83 6.29 -2.91 -0.02 4.81 16 29 H 0.34 18.80 7.08 -89.69 -0.63 18.16 16 30 H 0.32 15.15 7.20 -89.70 -0.65 14.50 16 31 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -68.66 262.73 0.48 -68.18 By element: Atomic # 1 Polarization: 46.11 SS G_CDS: -1.73 Total: 44.38 kcal Atomic # 6 Polarization: -28.24 SS G_CDS: 2.84 Total: -25.40 kcal Atomic # 7 Polarization: -116.42 SS G_CDS: -1.76 Total: -118.18 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.90 Total: -16.05 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -68.66 0.48 -68.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238368244.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.674 kcal (2) G-P(sol) polarization free energy of solvation -68.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds