Wall clock time and date at job start Mon Mar 30 2020 03:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 116.99814 * 2 1 4 4 C 1.38611 * 120.02138 * 0.23048 * 3 2 1 5 5 C 1.38789 * 119.87847 * 180.29518 * 4 3 2 6 6 N 1.39661 * 120.05321 * 179.70085 * 5 4 3 7 7 C 1.38980 * 119.90380 * 359.72429 * 5 4 3 8 8 C 1.38112 * 120.03252 * 0.02562 * 7 5 4 9 9 C 1.38214 * 120.13159 * 359.97113 * 8 7 5 10 10 C 1.50703 * 119.95734 * 180.02562 * 9 8 7 11 11 H 1.08993 * 109.47448 * 220.00613 * 10 9 8 12 12 N 1.46903 * 109.46667 * 340.00474 * 10 9 8 13 13 C 1.50697 * 109.47043 * 100.00145 * 10 9 8 14 14 H 1.07999 * 120.00085 * 356.30880 * 13 10 9 15 15 C 1.37879 * 119.99959 * 176.31158 * 13 10 9 16 16 N 1.31517 * 119.99667 * 353.13252 * 15 13 10 17 17 Si 1.86791 * 120.00262 * 173.14073 * 15 13 10 18 18 H 1.48508 * 109.47182 * 265.18489 * 17 15 13 19 19 H 1.48497 * 109.47424 * 25.17911 * 17 15 13 20 20 H 1.48502 * 109.47420 * 145.18339 * 17 15 13 21 21 H 1.08999 * 109.46712 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46886 * 299.99908 * 1 2 3 23 23 H 1.08997 * 109.46608 * 60.00212 * 1 2 3 24 24 H 1.08002 * 120.06345 * 0.02562 * 4 3 2 25 25 H 0.97001 * 120.00078 * 180.02562 * 6 5 4 26 26 H 0.96999 * 119.99951 * 0.02562 * 6 5 4 27 27 H 1.07994 * 119.98533 * 180.02562 * 7 5 4 28 28 H 1.08006 * 119.93198 * 180.02562 * 8 7 5 29 29 H 1.00901 * 111.00626 * 66.75465 * 12 10 9 30 30 H 1.00902 * 110.99956 * 190.70573 * 12 10 9 31 31 H 0.97002 * 120.00010 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3736 0.0048 5 6 1.9245 3.6087 -0.0014 6 7 1.1678 4.7825 -0.0029 7 6 3.3127 3.6757 -0.0066 8 6 4.0608 2.5147 -0.0062 9 6 3.4318 1.2840 0.0001 10 6 4.2519 0.0197 0.0011 11 1 3.7869 -0.7156 -0.6554 12 7 5.6085 0.3158 -0.4784 13 6 4.3234 -0.5315 1.4018 14 1 3.8757 0.0131 2.2200 15 6 4.9604 -1.7311 1.6389 16 7 5.3866 -2.4598 0.6305 17 14 5.2179 -2.3214 3.3923 18 1 6.5677 -1.9139 3.8586 19 1 4.1867 -1.7181 4.2742 20 1 5.1042 -3.8013 3.4382 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 0.2128 2.3187 0.0090 25 1 1.6111 5.6453 -0.0076 26 1 0.1990 4.7350 0.0008 27 1 3.8067 4.6360 -0.0110 28 1 5.1395 2.5687 -0.0099 29 1 6.1006 0.9096 0.1722 30 1 6.1238 -0.5340 -0.6532 31 1 5.8351 -3.3036 0.7972 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238381286.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:41 Heat of formation + Delta-G solvation = -14.167528 kcal Electronic energy + Delta-G solvation = -15160.078430 eV Core-core repulsion = 12634.403397 eV Total energy + Delta-G solvation = -2525.675032 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.49241 -37.06384 -35.16399 -32.98557 -30.98396 -29.40415 -28.21728 -26.44650 -25.50490 -22.49382 -21.50698 -19.80574 -17.52459 -16.68067 -16.37623 -15.11085 -14.98564 -14.90620 -14.66423 -14.16209 -13.81028 -12.87962 -12.66336 -12.37629 -12.20070 -11.62687 -11.32518 -11.07208 -10.95152 -10.81728 -10.53021 -10.35372 -9.98287 -9.32454 -9.28631 -8.43822 -7.76293 -7.18013 -6.67640 -5.92142 -4.04514 2.20171 2.42516 3.30706 3.38140 3.43053 4.02429 4.24641 4.43809 4.69065 5.29260 5.46741 5.53526 5.58083 5.73146 5.87530 5.92443 6.26359 6.36841 6.59239 6.69121 6.84862 7.15062 7.38225 7.53587 7.82096 7.89550 7.91380 8.09135 8.28502 8.32880 8.88671 9.02272 9.18774 9.62241 11.06381 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.030660 B = 0.009089 C = 0.008183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.014398 B = 3079.958251 C = 3420.836971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.292 6.292 3 C 0.166 3.834 4 C -0.289 4.289 5 C 0.219 3.781 6 N -0.887 5.887 7 C -0.237 4.237 8 C -0.034 4.034 9 C -0.108 4.108 10 C 0.252 3.748 11 H 0.053 0.947 12 N -0.850 5.850 13 C -0.526 4.526 14 H 0.052 0.948 15 C 0.065 3.935 16 N -0.894 5.894 17 Si 0.891 3.109 18 H -0.282 1.282 19 H -0.275 1.275 20 H -0.287 1.287 21 H 0.092 0.908 22 H 0.046 0.954 23 H 0.045 0.955 24 H 0.114 0.886 25 H 0.392 0.608 26 H 0.390 0.610 27 H 0.108 0.892 28 H 0.128 0.872 29 H 0.312 0.688 30 H 0.345 0.655 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.697 9.628 -1.151 12.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.204 6.204 3 C 0.119 3.881 4 C -0.313 4.313 5 C 0.117 3.883 6 N -0.427 5.427 7 C -0.260 4.260 8 C -0.052 4.052 9 C -0.111 4.111 10 C 0.143 3.857 11 H 0.071 0.929 12 N -0.377 5.377 13 C -0.567 4.567 14 H 0.070 0.930 15 C -0.137 4.137 16 N -0.534 5.534 17 Si 0.719 3.281 18 H -0.208 1.208 19 H -0.200 1.200 20 H -0.213 1.213 21 H 0.110 0.890 22 H 0.065 0.935 23 H 0.063 0.937 24 H 0.132 0.868 25 H 0.220 0.780 26 H 0.217 0.783 27 H 0.127 0.873 28 H 0.146 0.854 29 H 0.122 0.878 30 H 0.158 0.842 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.866 9.529 -1.834 12.492 hybrid contribution -0.131 -0.424 1.960 2.010 sum -7.997 9.105 0.126 12.119 Atomic orbital electron populations 1.22917 0.80525 1.02996 1.00191 1.86310 1.19334 1.26682 1.88062 1.18624 0.91831 0.83141 0.94475 1.20400 0.98697 0.91309 1.20864 1.17318 0.90747 0.85850 0.94434 1.42305 1.07920 1.05356 1.87112 1.20395 0.91475 0.98460 1.15669 1.20561 0.99689 0.90243 0.94751 1.19673 0.90170 0.97281 1.03974 1.17678 0.85861 0.87844 0.94358 0.92930 1.59527 1.06005 1.22221 1.49972 1.21775 1.35274 1.05499 0.94104 0.92954 1.24992 0.95845 0.96000 0.96878 1.69889 1.40102 1.13402 1.29988 0.86607 0.78378 0.77793 0.85356 1.20830 1.19985 1.21306 0.88995 0.93516 0.93655 0.86774 0.78034 0.78322 0.87343 0.85413 0.87810 0.84164 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.81 101.05 0.99 1.44 16 2 O -0.29 -6.31 9.72 -19.42 -0.19 -6.49 16 3 C 0.17 3.58 6.65 -39.25 -0.26 3.32 16 4 C -0.29 -5.23 8.88 -39.24 -0.35 -5.58 16 5 C 0.22 3.66 6.75 -83.81 -0.57 3.09 16 6 N -0.89 -10.71 9.09 32.40 0.29 -10.42 16 7 C -0.24 -4.19 9.89 -39.35 -0.39 -4.58 16 8 C -0.03 -0.68 9.26 -39.64 -0.37 -1.05 16 9 C -0.11 -2.51 5.04 -104.43 -0.53 -3.04 16 10 C 0.25 6.61 2.47 -70.01 -0.17 6.44 16 11 H 0.05 1.56 7.83 -51.93 -0.41 1.16 16 12 N -0.85 -20.59 8.46 -6.65 -0.06 -20.65 16 13 C -0.53 -14.81 8.61 -34.44 -0.30 -15.10 16 14 H 0.05 1.51 7.75 -52.49 -0.41 1.11 16 15 C 0.06 1.81 5.36 -17.82 -0.10 1.71 16 16 N -0.89 -25.67 12.16 55.43 0.67 -25.00 16 17 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 22 H 0.05 0.65 7.65 -51.93 -0.40 0.25 16 23 H 0.04 0.60 7.67 -51.93 -0.40 0.20 16 24 H 0.11 1.75 6.30 -52.49 -0.33 1.42 16 25 H 0.39 3.90 8.84 -40.82 -0.36 3.54 16 26 H 0.39 3.91 8.84 -40.82 -0.36 3.55 16 27 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 28 H 0.13 2.50 6.42 -52.48 -0.34 2.16 16 29 H 0.31 7.15 7.62 -39.29 -0.30 6.85 16 30 H 0.35 8.86 7.83 -39.29 -0.31 8.55 16 31 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 264.27 15.07 3.98 3.98 Total: -1.00 -30.93 264.27 -5.93 -36.86 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: -3.59 Total: 18.34 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -2.03 Total: -13.34 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: 0.91 Total: -56.06 kcal Atomic # 8 Polarization: -6.31 SS G_CDS: -0.19 Total: -6.49 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.93 -5.93 -36.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238381286.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.697 kcal (2) G-P(sol) polarization free energy of solvation -30.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds