Wall clock time and date at job start Mon Mar 30 2020 03:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 116.99814 * 2 1 4 4 C 1.38611 * 120.02138 * 0.23048 * 3 2 1 5 5 C 1.38789 * 119.87847 * 180.29518 * 4 3 2 6 6 N 1.39661 * 120.05321 * 179.70085 * 5 4 3 7 7 C 1.38980 * 119.90380 * 359.72429 * 5 4 3 8 8 C 1.38112 * 120.03252 * 0.02562 * 7 5 4 9 9 C 1.38214 * 120.13159 * 359.97113 * 8 7 5 10 10 C 1.50703 * 119.95734 * 180.02562 * 9 8 7 11 11 H 1.08993 * 109.47448 * 220.00613 * 10 9 8 12 12 N 1.46903 * 109.46667 * 340.00474 * 10 9 8 13 13 C 1.50697 * 109.47043 * 100.00145 * 10 9 8 14 14 H 1.07999 * 120.00085 * 356.30880 * 13 10 9 15 15 C 1.37879 * 119.99959 * 176.31158 * 13 10 9 16 16 N 1.31517 * 119.99667 * 353.13252 * 15 13 10 17 17 Si 1.86791 * 120.00262 * 173.14073 * 15 13 10 18 18 H 1.48508 * 109.47182 * 265.18489 * 17 15 13 19 19 H 1.48497 * 109.47424 * 25.17911 * 17 15 13 20 20 H 1.48502 * 109.47420 * 145.18339 * 17 15 13 21 21 H 1.08999 * 109.46712 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46886 * 299.99908 * 1 2 3 23 23 H 1.08997 * 109.46608 * 60.00212 * 1 2 3 24 24 H 1.08002 * 120.06345 * 0.02562 * 4 3 2 25 25 H 0.97001 * 120.00078 * 180.02562 * 6 5 4 26 26 H 0.96999 * 119.99951 * 0.02562 * 6 5 4 27 27 H 1.07994 * 119.98533 * 180.02562 * 7 5 4 28 28 H 1.08006 * 119.93198 * 180.02562 * 8 7 5 29 29 H 1.00901 * 111.00626 * 66.75465 * 12 10 9 30 30 H 1.00902 * 110.99956 * 190.70573 * 12 10 9 31 31 H 0.97002 * 120.00010 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3736 0.0048 5 6 1.9245 3.6087 -0.0014 6 7 1.1678 4.7825 -0.0029 7 6 3.3127 3.6757 -0.0066 8 6 4.0608 2.5147 -0.0062 9 6 3.4318 1.2840 0.0001 10 6 4.2519 0.0197 0.0011 11 1 3.7869 -0.7156 -0.6554 12 7 5.6085 0.3158 -0.4784 13 6 4.3234 -0.5315 1.4018 14 1 3.8757 0.0131 2.2200 15 6 4.9604 -1.7311 1.6389 16 7 5.3866 -2.4598 0.6305 17 14 5.2179 -2.3214 3.3923 18 1 6.5677 -1.9139 3.8586 19 1 4.1867 -1.7181 4.2742 20 1 5.1042 -3.8013 3.4382 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 0.2128 2.3187 0.0090 25 1 1.6111 5.6453 -0.0076 26 1 0.1990 4.7350 0.0008 27 1 3.8067 4.6360 -0.0110 28 1 5.1395 2.5687 -0.0099 29 1 6.1006 0.9096 0.1722 30 1 6.1238 -0.5340 -0.6532 31 1 5.8351 -3.3036 0.7972 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238381286.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:41 Heat of formation + Delta-G solvation = -38.240356 kcal Electronic energy + Delta-G solvation = -15161.122306 eV Core-core repulsion = 12634.403397 eV Total energy + Delta-G solvation = -2526.718908 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.96452 -38.49133 -36.91868 -34.63215 -32.90440 -30.85216 -29.69540 -27.94004 -27.39392 -24.23440 -22.94502 -21.48222 -18.91748 -18.52351 -17.97163 -16.87846 -16.41921 -16.18037 -16.12385 -15.99884 -15.36214 -14.74127 -14.24644 -13.82773 -13.80456 -13.26300 -13.14943 -12.87388 -12.64976 -12.34382 -12.23766 -11.96637 -11.83927 -11.20207 -10.80512 -10.52135 -9.21681 -9.15363 -8.26011 -7.88951 -6.25559 0.73319 0.93659 1.37008 1.38349 1.49334 2.41260 2.68243 3.12346 3.14614 3.16906 4.14776 4.26398 4.40117 4.42623 4.44869 4.72429 4.76933 4.83696 5.02819 5.12176 5.35454 5.43661 5.69052 5.83842 5.99082 6.04786 6.22503 6.62138 6.78029 6.86959 6.95391 7.15924 7.16890 7.45794 8.91924 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.030660 B = 0.009089 C = 0.008183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.014398 B = 3079.958251 C = 3420.836971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.334 6.334 3 C 0.149 3.851 4 C -0.291 4.291 5 C 0.233 3.767 6 N -0.864 5.864 7 C -0.239 4.239 8 C -0.039 4.039 9 C -0.158 4.158 10 C 0.263 3.737 11 H 0.003 0.997 12 N -0.837 5.837 13 C -0.539 4.539 14 H 0.037 0.963 15 C 0.019 3.981 16 N -0.920 5.920 17 Si 0.954 3.046 18 H -0.272 1.272 19 H -0.276 1.276 20 H -0.283 1.283 21 H 0.105 0.895 22 H 0.061 0.939 23 H 0.066 0.934 24 H 0.143 0.857 25 H 0.407 0.593 26 H 0.404 0.596 27 H 0.140 0.860 28 H 0.127 0.873 29 H 0.320 0.680 30 H 0.334 0.666 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.875 11.696 -0.398 14.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.247 6.247 3 C 0.102 3.898 4 C -0.315 4.315 5 C 0.128 3.872 6 N -0.405 5.405 7 C -0.262 4.262 8 C -0.058 4.058 9 C -0.161 4.161 10 C 0.153 3.847 11 H 0.021 0.979 12 N -0.364 5.364 13 C -0.578 4.578 14 H 0.056 0.944 15 C -0.180 4.180 16 N -0.560 5.560 17 Si 0.780 3.220 18 H -0.197 1.197 19 H -0.201 1.201 20 H -0.208 1.208 21 H 0.124 0.876 22 H 0.079 0.921 23 H 0.084 0.916 24 H 0.160 0.840 25 H 0.237 0.763 26 H 0.234 0.766 27 H 0.158 0.842 28 H 0.145 0.855 29 H 0.131 0.869 30 H 0.146 0.854 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.076 11.655 -1.082 14.812 hybrid contribution 0.126 -0.967 1.683 1.945 sum -8.951 10.688 0.601 13.954 Atomic orbital electron populations 1.23227 0.77678 1.04598 1.01834 1.86240 1.22545 1.27618 1.88320 1.18832 0.91719 0.84258 0.94975 1.20608 0.99945 0.90580 1.20346 1.17423 0.90855 0.86889 0.92042 1.42234 1.08640 1.04542 1.85095 1.20651 0.92033 0.98670 1.14827 1.20630 0.99973 0.90405 0.94780 1.19563 0.91164 0.96778 1.08642 1.17341 0.86497 0.88736 0.92171 0.97939 1.59491 1.05415 1.21499 1.49953 1.21944 1.35321 1.05839 0.94739 0.94431 1.25724 0.95563 0.96073 1.00675 1.70000 1.40511 1.13672 1.31779 0.85618 0.78473 0.77276 0.80657 1.19735 1.20097 1.20816 0.87640 0.92055 0.91574 0.83968 0.76269 0.76621 0.84186 0.85495 0.86927 0.85413 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 9.81 113.37 1.11 1.74 16 2 O -0.33 -14.79 9.72 -92.41 -0.90 -15.69 16 3 C 0.15 6.47 6.65 22.49 0.15 6.62 16 4 C -0.29 -9.90 8.88 22.49 0.20 -9.70 16 5 C 0.23 7.05 6.75 38.20 0.26 7.31 16 6 N -0.86 -16.88 9.09 -51.41 -0.47 -17.35 16 7 C -0.24 -7.84 9.89 22.42 0.22 -7.62 16 8 C -0.04 -1.58 9.26 22.23 0.21 -1.37 16 9 C -0.16 -7.56 5.04 -19.74 -0.10 -7.66 16 10 C 0.26 14.42 2.47 43.42 0.11 14.53 16 11 H 0.00 0.17 7.83 -2.39 -0.02 0.15 16 12 N -0.84 -42.15 8.46 -174.95 -1.48 -43.63 16 13 C -0.54 -31.33 8.61 25.60 0.22 -31.11 16 14 H 0.04 2.24 7.75 -2.91 -0.02 2.22 16 15 C 0.02 1.08 5.36 84.65 0.45 1.54 16 16 N -0.92 -54.23 12.16 21.45 0.26 -53.97 16 17 Si 0.95 45.19 29.54 68.60 2.03 47.22 16 18 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 19 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 20 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 21 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 22 H 0.06 1.60 7.65 -2.39 -0.02 1.58 16 23 H 0.07 1.64 7.67 -2.39 -0.02 1.62 16 24 H 0.14 3.88 6.30 -2.91 -0.02 3.87 16 25 H 0.41 6.06 8.84 -92.71 -0.82 5.24 16 26 H 0.40 6.12 8.84 -92.71 -0.82 5.30 16 27 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 28 H 0.13 4.98 6.42 -2.91 -0.02 4.96 16 29 H 0.32 15.09 7.62 -89.69 -0.68 14.40 16 30 H 0.33 17.88 7.83 -89.69 -0.70 17.18 16 31 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -69.14 264.27 0.44 -68.71 By element: Atomic # 1 Polarization: 42.28 SS G_CDS: -1.83 Total: 40.45 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: 2.83 Total: -25.72 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -1.69 Total: -114.96 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.90 Total: -15.69 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -69.14 0.44 -68.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238381286.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.465 kcal (2) G-P(sol) polarization free energy of solvation -69.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds