Wall clock time and date at job start Mon Mar 30 2020 03:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35896 * 116.99690 * 2 1 4 4 C 1.38615 * 120.01824 * 359.97438 * 3 2 1 5 5 C 1.38794 * 119.87215 * 180.02562 * 4 3 2 6 6 N 1.39670 * 120.04639 * 179.97438 * 5 4 3 7 7 C 1.38968 * 119.90457 * 0.02562 * 5 4 3 8 8 C 1.38109 * 120.03940 * 359.97438 * 7 5 4 9 9 C 1.38219 * 120.12513 * 0.02562 * 8 7 5 10 10 C 1.50706 * 119.95018 * 179.97438 * 9 8 7 11 11 H 1.08996 * 109.46690 * 145.01933 * 10 9 8 12 12 N 1.46902 * 109.47228 * 25.02068 * 10 9 8 13 13 C 1.50698 * 109.46907 * 265.01697 * 10 9 8 14 14 H 1.07992 * 120.00218 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99426 * 179.97438 * 13 10 9 16 16 N 1.31513 * 120.00702 * 0.02562 * 15 13 10 17 17 Si 1.86805 * 119.99777 * 180.02562 * 15 13 10 18 18 H 1.48502 * 109.47046 * 0.02562 * 17 15 13 19 19 H 1.48492 * 109.46995 * 120.00374 * 17 15 13 20 20 H 1.48500 * 109.47331 * 240.00323 * 17 15 13 21 21 H 1.09000 * 109.47191 * 60.00614 * 1 2 3 22 22 H 1.09004 * 109.46662 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47660 * 299.99570 * 1 2 3 24 24 H 1.08005 * 120.06326 * 359.74938 * 4 3 2 25 25 H 0.97004 * 119.99977 * 359.97438 * 6 5 4 26 26 H 0.96993 * 119.99927 * 179.97438 * 6 5 4 27 27 H 1.08000 * 119.97882 * 180.02562 * 7 5 4 28 28 H 1.08001 * 119.93688 * 180.02562 * 8 7 5 29 29 H 1.00894 * 110.99726 * 176.04414 * 12 10 9 30 30 H 1.00897 * 110.99793 * 299.99827 * 12 10 9 31 31 H 0.96994 * 120.00209 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3736 -0.0005 5 6 1.9245 3.6087 -0.0011 6 7 1.1677 4.7826 -0.0022 7 6 3.3126 3.6756 -0.0016 8 6 4.0607 2.5148 -0.0011 9 6 3.4316 1.2840 -0.0005 10 6 4.2519 0.0198 -0.0005 11 1 3.7435 -0.7431 0.5890 12 7 5.5715 0.2922 0.5847 13 6 4.4212 -0.4691 -1.4159 14 1 3.9795 0.0808 -2.2337 15 6 5.1411 -1.6180 -1.6669 16 7 5.6795 -2.2875 -0.6711 17 14 5.3516 -2.2237 -3.4214 18 1 4.6550 -1.2988 -4.3513 19 1 6.7969 -2.2690 -3.7593 20 1 4.7707 -3.5845 -3.5484 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 0.2127 2.3186 -0.0050 25 1 0.1988 4.7350 -0.0029 26 1 1.6109 5.6453 -0.0022 27 1 3.8065 4.6361 -0.0016 28 1 5.1394 2.5687 -0.0011 29 1 6.1173 -0.5535 0.6552 30 1 6.0631 0.9968 0.0557 31 1 6.1855 -3.0959 -0.8477 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238381974.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:43 Heat of formation + Delta-G solvation = -13.507085 kcal Electronic energy + Delta-G solvation = -15153.810399 eV Core-core repulsion = 12628.164005 eV Total energy + Delta-G solvation = -2525.646393 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.52091 -37.09390 -35.19213 -33.01106 -30.92574 -29.42979 -28.19824 -26.46424 -25.53555 -22.51265 -21.52930 -19.80614 -17.55904 -16.70574 -16.36324 -15.13884 -15.02291 -14.93108 -14.67849 -14.15463 -13.81042 -12.86748 -12.69848 -12.37071 -12.15373 -11.64849 -11.34719 -11.09151 -10.95919 -10.81934 -10.51320 -10.35121 -9.95397 -9.38848 -9.29942 -8.47883 -7.78529 -7.12162 -6.68577 -5.90317 -4.06538 2.17892 2.40800 3.29849 3.37992 3.43616 3.99189 4.23124 4.43017 4.67204 5.28859 5.44228 5.51416 5.55569 5.71056 5.84856 5.91825 6.24957 6.33615 6.57577 6.73124 6.83279 7.10841 7.36134 7.51033 7.80926 7.90198 7.92960 8.07993 8.27428 8.31148 8.86492 9.10883 9.27427 9.63063 11.05295 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.030440 B = 0.009026 C = 0.008166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.634253 B = 3101.543232 C = 3427.886871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.295 6.295 3 C 0.164 3.836 4 C -0.288 4.288 5 C 0.219 3.781 6 N -0.886 5.886 7 C -0.235 4.235 8 C -0.034 4.034 9 C -0.107 4.107 10 C 0.253 3.747 11 H 0.050 0.950 12 N -0.852 5.852 13 C -0.527 4.527 14 H 0.053 0.947 15 C 0.063 3.937 16 N -0.897 5.897 17 Si 0.893 3.107 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.284 1.284 21 H 0.047 0.953 22 H 0.092 0.908 23 H 0.046 0.954 24 H 0.115 0.885 25 H 0.390 0.610 26 H 0.393 0.607 27 H 0.109 0.891 28 H 0.127 0.873 29 H 0.354 0.646 30 H 0.308 0.692 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.285 9.447 1.138 12.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.207 6.207 3 C 0.118 3.882 4 C -0.311 4.311 5 C 0.117 3.883 6 N -0.427 5.427 7 C -0.258 4.258 8 C -0.053 4.053 9 C -0.110 4.110 10 C 0.143 3.857 11 H 0.068 0.932 12 N -0.381 5.381 13 C -0.567 4.567 14 H 0.071 0.929 15 C -0.138 4.138 16 N -0.538 5.538 17 Si 0.721 3.279 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.210 1.210 21 H 0.065 0.935 22 H 0.110 0.890 23 H 0.064 0.936 24 H 0.133 0.867 25 H 0.217 0.783 26 H 0.220 0.780 27 H 0.127 0.873 28 H 0.144 0.856 29 H 0.170 0.830 30 H 0.118 0.882 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.471 9.236 1.838 12.667 hybrid contribution -0.087 -0.273 -2.005 2.025 sum -8.558 8.964 -0.167 12.394 Atomic orbital electron populations 1.22921 0.80420 1.03018 1.00261 1.86283 1.19448 1.26784 1.88167 1.18610 0.91818 0.83127 0.94650 1.20402 0.98702 0.91295 1.20745 1.17312 0.90736 0.85863 0.94426 1.42305 1.07924 1.05351 1.87094 1.20384 0.91486 0.98446 1.15502 1.20536 0.99580 0.90335 0.94873 1.19671 0.90192 0.97317 1.03817 1.17703 0.86688 0.88072 0.93241 0.93241 1.59582 1.07134 1.15602 1.55827 1.21871 1.32385 1.08875 0.93548 0.92908 1.25001 0.95668 0.96098 0.97064 1.69755 1.35798 1.17808 1.30403 0.86531 0.77611 0.78661 0.85128 1.19882 1.21131 1.21020 0.93484 0.88976 0.93587 0.86738 0.78305 0.78015 0.87284 0.85572 0.82992 0.88216 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.81 101.05 0.99 1.43 16 2 O -0.29 -6.28 9.62 -19.41 -0.19 -6.47 16 3 C 0.16 3.53 6.66 -39.25 -0.26 3.27 16 4 C -0.29 -5.17 8.88 -39.24 -0.35 -5.52 16 5 C 0.22 3.65 6.75 -83.81 -0.57 3.08 16 6 N -0.89 -10.64 9.09 32.40 0.29 -10.34 16 7 C -0.24 -4.15 9.89 -39.36 -0.39 -4.54 16 8 C -0.03 -0.70 9.26 -39.64 -0.37 -1.07 16 9 C -0.11 -2.50 5.01 -104.43 -0.52 -3.02 16 10 C 0.25 6.68 2.67 -70.01 -0.19 6.50 16 11 H 0.05 1.47 7.68 -51.93 -0.40 1.07 16 12 N -0.85 -21.13 8.79 -6.65 -0.06 -21.19 16 13 C -0.53 -14.89 8.71 -34.44 -0.30 -15.19 16 14 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 15 C 0.06 1.76 5.38 -17.82 -0.10 1.67 16 16 N -0.90 -25.70 11.54 55.43 0.64 -25.06 16 17 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 18 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H 0.05 0.64 7.66 -51.93 -0.40 0.24 16 22 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 23 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 24 H 0.11 1.74 6.30 -52.48 -0.33 1.41 16 25 H 0.39 3.87 8.84 -40.82 -0.36 3.51 16 26 H 0.39 3.88 8.84 -40.82 -0.36 3.52 16 27 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 28 H 0.13 2.47 6.28 -52.49 -0.33 2.14 16 29 H 0.35 9.37 7.08 -39.29 -0.28 9.10 16 30 H 0.31 7.16 7.20 -39.29 -0.28 6.88 16 31 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 262.69 15.07 3.96 3.96 Total: -1.00 -31.06 262.69 -5.94 -37.00 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: -3.52 Total: 18.73 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -2.05 Total: -13.38 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: 0.88 Total: -56.59 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -0.19 Total: -6.47 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.06 -5.94 -37.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238381974.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.495 kcal (2) G-P(sol) polarization free energy of solvation -31.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds