Wall clock time and date at job start Mon Mar 30 2020 03:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35897 * 116.99902 * 2 1 4 4 C 1.38809 * 120.01911 * 359.97438 * 3 2 1 5 5 C 1.38176 * 120.09342 * 180.02562 * 4 3 2 6 6 C 1.38151 * 120.13092 * 359.96235 * 5 4 3 7 7 C 1.50704 * 119.98791 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47210 * 219.99993 * 7 6 5 9 9 N 1.46903 * 109.46600 * 340.00006 * 7 6 5 10 10 C 1.50697 * 109.47366 * 99.99429 * 7 6 5 11 11 H 1.08004 * 119.99799 * 356.32698 * 10 7 6 12 12 C 1.37876 * 120.00396 * 176.32027 * 10 7 6 13 13 N 1.31512 * 119.99496 * 353.12817 * 12 10 7 14 14 Si 1.86799 * 120.00339 * 173.13003 * 12 10 7 15 15 H 1.48497 * 109.46775 * 265.18769 * 14 12 10 16 16 H 1.48497 * 109.46854 * 25.18325 * 14 12 10 17 17 H 1.48492 * 109.47231 * 145.18712 * 14 12 10 18 18 C 1.38931 * 120.03556 * 0.29143 * 6 5 4 19 19 N 1.39662 * 120.05147 * 179.70598 * 18 6 5 20 20 C 1.38577 * 120.02027 * 180.02562 * 3 2 1 21 21 H 1.08995 * 109.46880 * 299.99949 * 1 2 3 22 22 H 1.08998 * 109.46897 * 60.00103 * 1 2 3 23 23 H 1.08996 * 109.46709 * 180.02562 * 1 2 3 24 24 H 1.07998 * 119.95778 * 0.03037 * 4 3 2 25 25 H 1.08004 * 119.93630 * 179.97438 * 5 4 3 26 26 H 1.00901 * 111.00626 * 66.74327 * 9 7 6 27 27 H 1.00902 * 110.99956 * 190.69434 * 9 7 6 28 28 H 0.96999 * 120.00164 * 179.97438 * 13 12 10 29 29 H 0.97009 * 119.99997 * 0.02562 * 19 18 6 30 30 H 0.97004 * 120.00493 * 179.97438 * 19 18 6 31 31 H 1.07999 * 120.06216 * 359.95567 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2903 2.3753 -0.0005 5 6 1.9160 3.6072 -0.0011 6 6 3.2953 3.6845 -0.0003 7 6 3.9744 5.0299 -0.0003 8 1 4.8413 4.9993 -0.6603 9 7 3.0333 6.0532 -0.4749 10 6 4.4201 5.3677 1.3991 11 1 4.1786 4.7054 2.2174 12 6 5.1362 6.5220 1.6348 13 7 5.5470 7.2585 0.6257 14 14 5.5230 7.0398 3.3874 15 1 4.4927 7.9998 3.8587 16 1 5.5248 5.8440 4.2678 17 1 6.8587 7.6872 3.4290 18 6 4.0569 2.5225 -0.0051 19 7 5.4514 2.6003 -0.0105 20 6 3.4298 1.2839 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0276 0.0005 24 1 0.2118 2.3183 -0.0005 25 1 1.3255 4.5116 -0.0019 26 1 2.2750 6.1782 0.1788 27 1 3.5071 6.9267 -0.6502 28 1 6.0505 8.0709 0.7914 29 1 5.8889 3.4661 -0.0105 30 1 5.9824 1.7885 -0.0135 31 1 4.0193 0.3790 -0.0002 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238401269.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:18 Heat of formation + Delta-G solvation = -18.377070 kcal Electronic energy + Delta-G solvation = -15022.992012 eV Core-core repulsion = 12497.134440 eV Total energy + Delta-G solvation = -2525.857572 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.53175 -37.57927 -34.31305 -33.34855 -31.46163 -29.33328 -27.70349 -26.77515 -25.75139 -22.82326 -21.26569 -19.70630 -17.63868 -16.53353 -16.48923 -15.32437 -15.25744 -14.86021 -14.70252 -14.20254 -13.42111 -12.98085 -12.79289 -12.30954 -12.27062 -11.91755 -11.53546 -11.28134 -11.04189 -10.81199 -10.69674 -10.17952 -10.01484 -9.49515 -9.45926 -8.63419 -7.57032 -7.27942 -6.65200 -6.08061 -4.24686 2.29974 2.39571 3.20766 3.29235 3.33855 3.67868 4.31180 4.69449 4.78117 5.12364 5.28469 5.37135 5.57699 5.66616 5.79332 5.97625 6.20759 6.37107 6.59050 6.65815 7.05368 7.08843 7.25075 7.45543 7.70692 7.75331 7.97769 8.13293 8.30717 8.59282 8.71844 8.89045 9.04927 9.45276 10.87493 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.039789 B = 0.007521 C = 0.007347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.550146 B = 3721.818739 C = 3810.179875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.327 6.327 3 C 0.141 3.859 4 C -0.271 4.271 5 C -0.033 4.033 6 C -0.136 4.136 7 C 0.251 3.749 8 H 0.045 0.955 9 N -0.848 5.848 10 C -0.540 4.540 11 H 0.055 0.945 12 C 0.066 3.934 13 N -0.892 5.892 14 Si 0.892 3.108 15 H -0.281 1.281 16 H -0.274 1.274 17 H -0.287 1.287 18 C 0.253 3.747 19 N -0.868 5.868 20 C -0.242 4.242 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.089 0.911 24 H 0.112 0.888 25 H 0.123 0.877 26 H 0.315 0.685 27 H 0.345 0.655 28 H 0.264 0.736 29 H 0.411 0.589 30 H 0.387 0.613 31 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.533 -8.813 -1.082 10.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.241 6.241 3 C 0.096 3.904 4 C -0.291 4.291 5 C -0.052 4.052 6 C -0.140 4.140 7 C 0.141 3.859 8 H 0.062 0.938 9 N -0.376 5.376 10 C -0.580 4.580 11 H 0.074 0.926 12 C -0.136 4.136 13 N -0.531 5.531 14 Si 0.720 3.280 15 H -0.207 1.207 16 H -0.199 1.199 17 H -0.213 1.213 18 C 0.146 3.854 19 N -0.407 5.407 20 C -0.266 4.266 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.108 0.892 24 H 0.130 0.870 25 H 0.141 0.859 26 H 0.125 0.875 27 H 0.158 0.842 28 H 0.074 0.926 29 H 0.243 0.757 30 H 0.213 0.787 31 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.473 -9.313 -1.769 10.946 hybrid contribution 0.674 1.020 1.964 2.314 sum -4.799 -8.293 0.196 9.583 Atomic orbital electron populations 1.22892 0.79414 1.02710 1.01216 1.85959 1.20583 1.28090 1.89511 1.18474 0.91519 0.83366 0.97023 1.20842 0.98724 0.92531 1.17038 1.20499 0.93969 0.96076 0.94701 1.19894 0.93235 0.95157 1.05762 1.17681 0.89969 0.84382 0.93861 0.93753 1.59468 1.14209 1.13871 1.50005 1.21866 1.35081 1.06581 0.94428 0.92632 1.25029 0.94826 0.96699 0.97071 1.69875 1.37541 1.15538 1.30129 0.86579 0.77606 0.78768 0.85067 1.20706 1.19898 1.21252 1.17256 0.84253 0.92124 0.91763 1.42545 1.03099 1.11000 1.84023 1.19473 0.91568 0.96190 1.19378 0.93042 0.93020 0.89217 0.87048 0.85935 0.87549 0.84213 0.92637 0.75736 0.78708 0.86670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.38 16 2 O -0.33 -5.39 10.49 -19.42 -0.20 -5.60 16 3 C 0.14 2.62 6.68 -39.25 -0.26 2.35 16 4 C -0.27 -4.96 9.03 -39.39 -0.36 -5.32 16 5 C -0.03 -0.68 9.26 -39.64 -0.37 -1.04 16 6 C -0.14 -3.01 5.04 -104.40 -0.53 -3.53 16 7 C 0.25 6.09 2.18 -70.01 -0.15 5.93 16 8 H 0.04 1.17 7.07 -51.93 -0.37 0.81 16 9 N -0.85 -19.64 8.46 -6.65 -0.06 -19.70 16 10 C -0.54 -14.08 8.39 -34.44 -0.29 -14.37 16 11 H 0.06 1.52 7.75 -52.48 -0.41 1.11 16 12 C 0.07 1.74 5.36 -17.82 -0.10 1.64 16 13 N -0.89 -23.96 12.16 55.43 0.67 -23.28 16 14 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 18 C 0.25 5.16 6.73 -83.81 -0.56 4.60 16 19 N -0.87 -15.77 9.00 32.40 0.29 -15.47 16 20 C -0.24 -4.61 9.83 -39.24 -0.39 -4.99 16 21 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 22 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 23 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.11 1.74 6.29 -52.49 -0.33 1.41 16 25 H 0.12 2.40 6.42 -52.48 -0.34 2.06 16 26 H 0.31 7.00 7.62 -39.29 -0.30 6.70 16 27 H 0.34 8.45 7.83 -39.29 -0.31 8.15 16 28 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 29 H 0.41 8.10 6.86 -40.82 -0.28 7.82 16 30 H 0.39 5.69 8.84 -40.82 -0.36 5.33 16 31 H 0.12 1.97 8.06 -52.49 -0.42 1.54 16 LS Contribution 261.80 15.07 3.95 3.95 Total: -1.00 -28.16 261.80 -5.84 -34.01 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: -3.46 Total: 23.76 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -2.01 Total: -13.35 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: 0.91 Total: -58.46 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.20 Total: -5.60 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.16 -5.84 -34.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238401269.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.630 kcal (2) G-P(sol) polarization free energy of solvation -28.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds