Wall clock time and date at job start Mon Mar 30 2020 03:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35897 * 116.99902 * 2 1 4 4 C 1.38809 * 120.01911 * 359.97438 * 3 2 1 5 5 C 1.38176 * 120.09342 * 180.02562 * 4 3 2 6 6 C 1.38151 * 120.13092 * 359.96235 * 5 4 3 7 7 C 1.50704 * 119.98791 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47210 * 219.99993 * 7 6 5 9 9 N 1.46903 * 109.46600 * 340.00006 * 7 6 5 10 10 C 1.50697 * 109.47366 * 99.99429 * 7 6 5 11 11 H 1.08004 * 119.99799 * 356.32698 * 10 7 6 12 12 C 1.37876 * 120.00396 * 176.32027 * 10 7 6 13 13 N 1.31512 * 119.99496 * 353.12817 * 12 10 7 14 14 Si 1.86799 * 120.00339 * 173.13003 * 12 10 7 15 15 H 1.48497 * 109.46775 * 265.18769 * 14 12 10 16 16 H 1.48497 * 109.46854 * 25.18325 * 14 12 10 17 17 H 1.48492 * 109.47231 * 145.18712 * 14 12 10 18 18 C 1.38931 * 120.03556 * 0.29143 * 6 5 4 19 19 N 1.39662 * 120.05147 * 179.70598 * 18 6 5 20 20 C 1.38577 * 120.02027 * 180.02562 * 3 2 1 21 21 H 1.08995 * 109.46880 * 299.99949 * 1 2 3 22 22 H 1.08998 * 109.46897 * 60.00103 * 1 2 3 23 23 H 1.08996 * 109.46709 * 180.02562 * 1 2 3 24 24 H 1.07998 * 119.95778 * 0.03037 * 4 3 2 25 25 H 1.08004 * 119.93630 * 179.97438 * 5 4 3 26 26 H 1.00901 * 111.00626 * 66.74327 * 9 7 6 27 27 H 1.00902 * 110.99956 * 190.69434 * 9 7 6 28 28 H 0.96999 * 120.00164 * 179.97438 * 13 12 10 29 29 H 0.97009 * 119.99997 * 0.02562 * 19 18 6 30 30 H 0.97004 * 120.00493 * 179.97438 * 19 18 6 31 31 H 1.07999 * 120.06216 * 359.95567 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2903 2.3753 -0.0005 5 6 1.9160 3.6072 -0.0011 6 6 3.2953 3.6845 -0.0003 7 6 3.9744 5.0299 -0.0003 8 1 4.8413 4.9993 -0.6603 9 7 3.0333 6.0532 -0.4749 10 6 4.4201 5.3677 1.3991 11 1 4.1786 4.7054 2.2174 12 6 5.1362 6.5220 1.6348 13 7 5.5470 7.2585 0.6257 14 14 5.5230 7.0398 3.3874 15 1 4.4927 7.9998 3.8587 16 1 5.5248 5.8440 4.2678 17 1 6.8587 7.6872 3.4290 18 6 4.0569 2.5225 -0.0051 19 7 5.4514 2.6003 -0.0105 20 6 3.4298 1.2839 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0276 0.0005 24 1 0.2118 2.3183 -0.0005 25 1 1.3255 4.5116 -0.0019 26 1 2.2750 6.1782 0.1788 27 1 3.5071 6.9267 -0.6502 28 1 6.0505 8.0709 0.7914 29 1 5.8889 3.4661 -0.0105 30 1 5.9824 1.7885 -0.0135 31 1 4.0193 0.3790 -0.0002 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238401269.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:18 Heat of formation + Delta-G solvation = -38.967709 kcal Electronic energy + Delta-G solvation = -15023.884889 eV Core-core repulsion = 12497.134440 eV Total energy + Delta-G solvation = -2526.750449 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.93767 -39.00322 -36.14396 -34.82428 -33.36365 -30.79959 -29.28391 -27.99577 -27.55725 -24.52617 -22.77646 -21.32077 -18.99908 -18.52500 -17.98756 -16.97529 -16.47174 -16.35725 -16.19075 -15.83091 -15.04627 -14.77730 -14.36686 -13.81969 -13.71484 -13.48291 -13.04189 -12.94600 -12.72948 -12.57669 -12.20277 -11.91148 -11.56680 -11.29818 -10.94767 -10.64037 -9.22000 -9.03005 -8.29579 -7.95831 -6.31019 0.77241 0.89604 1.36008 1.40319 1.48988 2.38553 2.47084 3.08120 3.15839 3.36182 4.14682 4.29535 4.38091 4.49410 4.49913 4.71700 4.81394 4.83727 4.87557 5.18302 5.27425 5.57625 5.65676 5.72297 5.90964 6.00996 6.16910 6.63110 6.73060 6.79259 6.93522 7.11281 7.19514 7.42459 8.85672 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.039789 B = 0.007521 C = 0.007347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.550146 B = 3721.818739 C = 3810.179875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.336 6.336 3 C 0.146 3.854 4 C -0.270 4.270 5 C -0.040 4.040 6 C -0.172 4.172 7 C 0.260 3.740 8 H 0.016 0.984 9 N -0.839 5.839 10 C -0.545 4.545 11 H 0.039 0.961 12 C 0.028 3.972 13 N -0.912 5.912 14 Si 0.949 3.051 15 H -0.278 1.278 16 H -0.278 1.278 17 H -0.283 1.283 18 C 0.242 3.758 19 N -0.863 5.863 20 C -0.250 4.250 21 H 0.059 0.941 22 H 0.061 0.939 23 H 0.121 0.879 24 H 0.141 0.859 25 H 0.125 0.875 26 H 0.320 0.680 27 H 0.335 0.665 28 H 0.265 0.735 29 H 0.403 0.597 30 H 0.402 0.598 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.621 -9.995 -0.572 12.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.250 6.250 3 C 0.100 3.900 4 C -0.290 4.290 5 C -0.059 4.059 6 C -0.177 4.177 7 C 0.150 3.850 8 H 0.034 0.966 9 N -0.366 5.366 10 C -0.585 4.585 11 H 0.057 0.943 12 C -0.172 4.172 13 N -0.552 5.552 14 Si 0.776 3.224 15 H -0.203 1.203 16 H -0.203 1.203 17 H -0.209 1.209 18 C 0.135 3.865 19 N -0.402 5.402 20 C -0.274 4.274 21 H 0.077 0.923 22 H 0.079 0.921 23 H 0.139 0.861 24 H 0.159 0.841 25 H 0.143 0.857 26 H 0.130 0.870 27 H 0.147 0.853 28 H 0.075 0.925 29 H 0.232 0.768 30 H 0.231 0.769 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.572 -10.527 -1.260 12.474 hybrid contribution 0.930 1.281 1.779 2.382 sum -5.642 -9.246 0.519 10.844 Atomic orbital electron populations 1.23276 0.76810 1.05197 1.02024 1.85962 1.23225 1.26837 1.88993 1.18613 0.91596 0.84284 0.95468 1.21074 1.00250 0.91582 1.16109 1.20618 0.93411 0.97219 0.94665 1.19837 0.94291 0.94542 1.09047 1.17446 0.89471 0.85928 0.92181 0.96650 1.59450 1.13963 1.13146 1.49994 1.21942 1.35191 1.06437 0.94888 0.94263 1.25615 0.94782 0.96737 1.00090 1.69959 1.37932 1.15771 1.31511 0.85692 0.77449 0.78082 0.81208 1.20348 1.20278 1.20882 1.17408 0.84907 0.92306 0.91885 1.42484 1.02702 1.11314 1.83672 1.19690 0.92365 0.96168 1.19212 0.92270 0.92076 0.86084 0.84133 0.85749 0.86962 0.85266 0.92548 0.76752 0.76891 0.84939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.81 113.37 1.11 1.54 16 2 O -0.34 -10.07 10.49 -92.39 -0.97 -11.04 16 3 C 0.15 5.10 6.68 22.49 0.15 5.25 16 4 C -0.27 -9.32 9.03 22.39 0.20 -9.12 16 5 C -0.04 -1.60 9.26 22.23 0.21 -1.39 16 6 C -0.17 -7.66 5.04 -19.72 -0.10 -7.76 16 7 C 0.26 12.84 2.18 43.42 0.09 12.94 16 8 H 0.02 0.85 7.07 -2.39 -0.02 0.84 16 9 N -0.84 -39.35 8.46 -174.95 -1.48 -40.83 16 10 C -0.54 -28.77 8.39 25.60 0.21 -28.56 16 11 H 0.04 2.17 7.75 -2.91 -0.02 2.15 16 12 C 0.03 1.49 5.36 84.65 0.45 1.95 16 13 N -0.91 -49.37 12.16 21.45 0.26 -49.10 16 14 Si 0.95 42.52 29.54 68.60 2.03 44.55 16 15 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 16 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 17 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 18 C 0.24 9.83 6.73 38.20 0.26 10.09 16 19 N -0.86 -31.46 9.00 -51.41 -0.46 -31.92 16 20 C -0.25 -9.18 9.83 22.49 0.22 -8.96 16 21 H 0.06 1.11 7.66 -2.39 -0.02 1.09 16 22 H 0.06 1.13 7.66 -2.39 -0.02 1.11 16 23 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.14 3.93 6.29 -2.91 -0.02 3.91 16 25 H 0.12 4.80 6.42 -2.91 -0.02 4.78 16 26 H 0.32 14.30 7.62 -89.69 -0.68 13.62 16 27 H 0.34 16.72 7.83 -89.69 -0.70 16.02 16 28 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 29 H 0.40 16.26 6.86 -92.70 -0.64 15.63 16 30 H 0.40 11.64 8.84 -92.71 -0.82 10.82 16 31 H 0.13 4.27 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -59.18 261.80 0.54 -58.64 By element: Atomic # 1 Polarization: 55.38 SS G_CDS: -1.65 Total: 53.73 kcal Atomic # 6 Polarization: -26.84 SS G_CDS: 2.81 Total: -24.02 kcal Atomic # 7 Polarization: -120.17 SS G_CDS: -1.68 Total: -121.86 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: -0.97 Total: -11.04 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -59.18 0.54 -58.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238401269.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.671 kcal (2) G-P(sol) polarization free energy of solvation -59.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds