Wall clock time and date at job start Mon Mar 30 2020 03:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36009 * 116.99919 * 2 1 4 4 C 1.39362 * 120.08037 * 90.00401 * 3 2 1 5 5 N 1.39960 * 120.08953 * 0.04156 * 4 3 2 6 6 C 1.38688 * 119.81954 * 180.02562 * 4 3 2 7 7 C 1.38261 * 119.97952 * 0.28105 * 6 4 3 8 8 C 1.38215 * 120.15948 * 359.41255 * 7 6 4 9 9 C 1.38318 * 120.18163 * 0.60763 * 8 7 6 10 10 C 1.50701 * 119.99501 * 179.69593 * 9 8 7 11 11 H 1.09000 * 109.47329 * 219.98430 * 10 9 8 12 12 N 1.46906 * 109.46851 * 339.98203 * 10 9 8 13 13 C 1.50698 * 109.47158 * 99.97659 * 10 9 8 14 14 H 1.08004 * 119.99804 * 0.02562 * 13 10 9 15 15 C 1.37878 * 120.00224 * 180.02562 * 13 10 9 16 16 N 1.31511 * 120.00194 * 180.02562 * 15 13 10 17 17 Si 1.86805 * 119.99842 * 0.02562 * 15 13 10 18 18 H 1.48500 * 109.46730 * 89.99949 * 17 15 13 19 19 H 1.48497 * 109.47093 * 210.00106 * 17 15 13 20 20 H 1.48501 * 109.46927 * 330.00172 * 17 15 13 21 21 H 1.09004 * 109.46455 * 299.99844 * 1 2 3 22 22 H 1.08998 * 109.47286 * 59.99998 * 1 2 3 23 23 H 1.08999 * 109.46554 * 180.02562 * 1 2 3 24 24 H 0.97003 * 119.99740 * 179.97438 * 5 4 3 25 25 H 0.96999 * 120.00202 * 359.97438 * 5 4 3 26 26 H 1.08002 * 120.00585 * 179.97438 * 6 4 3 27 27 H 1.08000 * 119.91777 * 179.72376 * 7 6 4 28 28 H 1.07997 * 119.90705 * 180.28601 * 8 7 6 29 29 H 1.00900 * 111.00076 * 59.99601 * 12 10 9 30 30 H 1.00898 * 110.99674 * 183.95745 * 12 10 9 31 31 H 0.96997 * 120.00220 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 2.3636 1.8342 1.2059 5 7 2.0484 1.2134 2.4201 6 6 2.9928 3.0702 1.1996 7 6 3.2981 3.6838 -0.0011 8 6 2.9889 3.0630 -1.1966 9 6 2.3611 1.8305 -1.1982 10 6 2.0197 1.1605 -2.5042 11 1 1.0392 0.6906 -2.4261 12 7 1.9981 2.1630 -3.5778 13 6 3.0559 0.1120 -2.8168 14 1 3.8792 -0.0531 -2.1375 15 6 2.9530 -0.6367 -3.9701 16 7 3.8571 -1.5521 -4.2426 17 14 1.5295 -0.3507 -5.1454 18 1 1.9117 0.6797 -6.1441 19 1 1.2016 -1.6195 -5.8437 20 1 0.3437 0.1152 -4.3824 21 1 -0.3632 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 2.2702 1.6476 3.2587 25 1 1.6083 0.3491 2.4230 26 1 3.2396 3.5553 2.1324 27 1 3.7840 4.6483 -0.0049 28 1 3.2334 3.5439 -2.1322 29 1 2.8963 2.6133 -3.6702 30 1 1.7087 1.7504 -4.4519 31 1 3.7845 -2.0790 -5.0538 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238426395.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:19 Heat of formation + Delta-G solvation = -2.223467 kcal Electronic energy + Delta-G solvation = -15439.497067 eV Core-core repulsion = 12914.339968 eV Total energy + Delta-G solvation = -2525.157099 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.57718 -36.57357 -35.46331 -33.36815 -31.68801 -29.48492 -27.90824 -26.43731 -25.82773 -22.95383 -21.40205 -19.85726 -17.28977 -17.06743 -16.60279 -15.91720 -15.14526 -14.82471 -14.47187 -14.26360 -13.81196 -13.23069 -12.88648 -12.37428 -12.27802 -12.01168 -11.61012 -11.30305 -10.92076 -10.78808 -10.64319 -10.05734 -9.89802 -9.49543 -9.23188 -8.69593 -7.99962 -7.41506 -6.98315 -6.13396 -4.14315 1.93319 2.22237 3.16899 3.30765 3.31463 4.10806 4.29306 4.29889 4.66032 5.14093 5.40493 5.60379 5.66146 5.77547 5.83020 5.98560 6.11205 6.12953 6.29095 6.46167 6.74872 6.88250 7.14627 7.33500 7.44921 7.53774 7.73817 8.09835 8.13409 8.30759 8.34536 8.57458 8.96368 9.45414 10.99806 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.032782 B = 0.010358 C = 0.009235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.925347 B = 2702.602746 C = 3031.060996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.313 6.313 3 C 0.017 3.983 4 C 0.194 3.806 5 N -0.879 5.879 6 C -0.212 4.212 7 C -0.083 4.083 8 C -0.156 4.156 9 C 0.004 3.996 10 C 0.210 3.790 11 H 0.051 0.949 12 N -0.851 5.851 13 C -0.526 4.526 14 H 0.076 0.924 15 C 0.071 3.929 16 N -0.892 5.892 17 Si 0.871 3.129 18 H -0.276 1.276 19 H -0.291 1.291 20 H -0.261 1.261 21 H 0.032 0.968 22 H 0.044 0.956 23 H 0.085 0.915 24 H 0.392 0.608 25 H 0.397 0.603 26 H 0.113 0.887 27 H 0.115 0.885 28 H 0.124 0.876 29 H 0.332 0.668 30 H 0.317 0.683 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.373 7.188 9.248 12.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.229 6.229 3 C -0.031 4.031 4 C 0.090 3.910 5 N -0.420 5.420 6 C -0.235 4.235 7 C -0.102 4.102 8 C -0.176 4.176 9 C 0.002 3.998 10 C 0.101 3.899 11 H 0.069 0.931 12 N -0.384 5.384 13 C -0.566 4.566 14 H 0.094 0.906 15 C -0.132 4.132 16 N -0.530 5.530 17 Si 0.701 3.299 18 H -0.203 1.203 19 H -0.218 1.218 20 H -0.186 1.186 21 H 0.051 0.949 22 H 0.063 0.937 23 H 0.104 0.896 24 H 0.219 0.781 25 H 0.226 0.774 26 H 0.131 0.869 27 H 0.133 0.867 28 H 0.141 0.859 29 H 0.145 0.855 30 H 0.132 0.868 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.795 7.241 9.502 13.278 hybrid contribution -0.138 -0.654 -0.815 1.054 sum -5.933 6.588 8.687 12.412 Atomic orbital electron populations 1.22917 0.81536 1.02206 0.99758 1.86214 1.18028 1.24648 1.94023 1.17907 1.05716 0.89040 0.90433 1.18034 0.95242 0.91861 0.85876 1.42291 1.70413 1.24805 1.04477 1.20254 1.09078 0.95972 0.98197 1.20806 0.98398 0.98894 0.92067 1.20681 1.03326 0.95909 0.97708 1.20160 0.92785 0.92211 0.94634 1.18361 0.97389 0.88822 0.85296 0.93092 1.59783 1.34837 1.34786 1.09041 1.21498 1.10061 1.17972 1.07076 0.90567 1.25006 0.95622 0.94720 0.97814 1.69892 1.34554 1.22565 1.25986 0.87042 0.84026 0.77283 0.81595 1.20251 1.21824 1.18627 0.94894 0.93743 0.89635 0.78096 0.77425 0.86921 0.86737 0.85850 0.85496 0.86758 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.84 101.05 1.10 1.61 16 2 O -0.31 -6.52 8.99 -19.77 -0.18 -6.70 16 3 C 0.02 0.36 5.71 -39.08 -0.22 0.13 16 4 C 0.19 3.39 6.77 -83.56 -0.57 2.83 16 5 N -0.88 -11.99 9.09 32.51 0.30 -11.70 16 6 C -0.21 -3.41 9.89 -39.41 -0.39 -3.80 16 7 C -0.08 -1.37 10.04 -39.58 -0.40 -1.77 16 8 C -0.16 -3.03 9.25 -39.56 -0.37 -3.40 16 9 C 0.00 0.08 5.03 -104.51 -0.53 -0.44 16 10 C 0.21 5.14 2.13 -70.01 -0.15 4.99 16 11 H 0.05 1.30 5.61 -51.93 -0.29 1.01 16 12 N -0.85 -19.01 8.62 -6.65 -0.06 -19.07 16 13 C -0.53 -15.02 9.29 -34.44 -0.32 -15.34 16 14 H 0.08 2.44 7.98 -52.48 -0.42 2.02 16 15 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 16 N -0.89 -27.35 13.96 55.43 0.77 -26.58 16 17 Si 0.87 21.31 24.61 -169.99 -4.18 17.13 16 18 H -0.28 -6.44 7.01 56.52 0.40 -6.04 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 21 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.04 0.77 7.12 -51.93 -0.37 0.40 16 23 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 24 H 0.39 4.14 8.85 -40.82 -0.36 3.78 16 25 H 0.40 5.26 8.19 -40.82 -0.33 4.93 16 26 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 27 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 28 H 0.12 2.27 6.24 -52.49 -0.33 1.95 16 29 H 0.33 7.02 7.28 -39.29 -0.29 6.74 16 30 H 0.32 7.20 4.29 -39.29 -0.17 7.03 16 31 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 256.62 15.07 3.87 3.87 Total: -1.00 -31.99 256.62 -4.84 -36.84 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: -3.42 Total: 19.46 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -1.94 Total: -13.25 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: 1.01 Total: -57.34 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -0.18 Total: -6.70 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.18 Total: 17.13 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -31.99 -4.84 -36.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238426395.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.613 kcal (2) G-P(sol) polarization free energy of solvation -31.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds