Wall clock time and date at job start Mon Mar 30 2020 03:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36009 * 116.99919 * 2 1 4 4 C 1.39362 * 120.08037 * 90.00401 * 3 2 1 5 5 N 1.39960 * 120.08953 * 0.04156 * 4 3 2 6 6 C 1.38688 * 119.81954 * 180.02562 * 4 3 2 7 7 C 1.38261 * 119.97952 * 0.28105 * 6 4 3 8 8 C 1.38215 * 120.15948 * 359.41255 * 7 6 4 9 9 C 1.38318 * 120.18163 * 0.60763 * 8 7 6 10 10 C 1.50701 * 119.99501 * 179.69593 * 9 8 7 11 11 H 1.09000 * 109.47329 * 219.98430 * 10 9 8 12 12 N 1.46906 * 109.46851 * 339.98203 * 10 9 8 13 13 C 1.50698 * 109.47158 * 99.97659 * 10 9 8 14 14 H 1.08004 * 119.99804 * 0.02562 * 13 10 9 15 15 C 1.37878 * 120.00224 * 180.02562 * 13 10 9 16 16 N 1.31511 * 120.00194 * 180.02562 * 15 13 10 17 17 Si 1.86805 * 119.99842 * 0.02562 * 15 13 10 18 18 H 1.48500 * 109.46730 * 89.99949 * 17 15 13 19 19 H 1.48497 * 109.47093 * 210.00106 * 17 15 13 20 20 H 1.48501 * 109.46927 * 330.00172 * 17 15 13 21 21 H 1.09004 * 109.46455 * 299.99844 * 1 2 3 22 22 H 1.08998 * 109.47286 * 59.99998 * 1 2 3 23 23 H 1.08999 * 109.46554 * 180.02562 * 1 2 3 24 24 H 0.97003 * 119.99740 * 179.97438 * 5 4 3 25 25 H 0.96999 * 120.00202 * 359.97438 * 5 4 3 26 26 H 1.08002 * 120.00585 * 179.97438 * 6 4 3 27 27 H 1.08000 * 119.91777 * 179.72376 * 7 6 4 28 28 H 1.07997 * 119.90705 * 180.28601 * 8 7 6 29 29 H 1.00900 * 111.00076 * 59.99601 * 12 10 9 30 30 H 1.00898 * 110.99674 * 183.95745 * 12 10 9 31 31 H 0.96997 * 120.00220 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 2.3636 1.8342 1.2059 5 7 2.0484 1.2134 2.4201 6 6 2.9928 3.0702 1.1996 7 6 3.2981 3.6838 -0.0011 8 6 2.9889 3.0630 -1.1966 9 6 2.3611 1.8305 -1.1982 10 6 2.0197 1.1605 -2.5042 11 1 1.0392 0.6906 -2.4261 12 7 1.9981 2.1630 -3.5778 13 6 3.0559 0.1120 -2.8168 14 1 3.8792 -0.0531 -2.1375 15 6 2.9530 -0.6367 -3.9701 16 7 3.8571 -1.5521 -4.2426 17 14 1.5295 -0.3507 -5.1454 18 1 1.9117 0.6797 -6.1441 19 1 1.2016 -1.6195 -5.8437 20 1 0.3437 0.1152 -4.3824 21 1 -0.3632 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 2.2702 1.6476 3.2587 25 1 1.6083 0.3491 2.4230 26 1 3.2396 3.5553 2.1324 27 1 3.7840 4.6483 -0.0049 28 1 3.2334 3.5439 -2.1322 29 1 2.8963 2.6133 -3.6702 30 1 1.7087 1.7504 -4.4519 31 1 3.7845 -2.0790 -5.0538 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238426395.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:19 Heat of formation + Delta-G solvation = -28.356712 kcal Electronic energy + Delta-G solvation = -15440.630290 eV Core-core repulsion = 12914.339968 eV Total energy + Delta-G solvation = -2526.290321 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.01055 -38.02413 -37.15275 -34.89204 -33.71943 -30.96728 -29.25644 -28.22827 -27.41879 -24.70032 -22.79849 -21.48384 -19.16662 -18.66063 -18.13411 -17.34614 -16.76848 -16.27985 -16.17893 -15.77976 -15.24774 -15.00260 -14.53465 -14.00455 -13.85605 -13.55180 -13.30671 -12.82857 -12.77151 -12.46358 -12.25033 -11.83314 -11.46162 -11.26146 -10.90204 -10.69584 -9.63925 -9.16466 -8.36542 -8.26300 -6.42641 0.53217 0.81079 1.21871 1.30093 1.39646 2.21783 2.78000 2.95202 3.09963 3.23045 3.87981 4.20485 4.33389 4.41560 4.49778 4.66104 4.69209 4.73427 4.86561 4.91794 5.27436 5.38661 5.43580 5.73909 5.83513 6.03346 6.09975 6.41374 6.47873 6.59106 6.70669 6.91978 7.08908 7.21350 8.80624 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.032782 B = 0.010358 C = 0.009235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.925347 B = 2702.602746 C = 3031.060996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.342 6.342 3 C -0.010 4.010 4 C 0.191 3.809 5 N -0.864 5.864 6 C -0.204 4.204 7 C -0.075 4.075 8 C -0.174 4.174 9 C -0.037 4.037 10 C 0.222 3.778 11 H 0.037 0.963 12 N -0.837 5.837 13 C -0.528 4.528 14 H 0.023 0.977 15 C 0.013 3.987 16 N -0.941 5.941 17 Si 0.940 3.060 18 H -0.252 1.252 19 H -0.291 1.291 20 H -0.251 1.251 21 H 0.058 0.942 22 H 0.029 0.971 23 H 0.103 0.897 24 H 0.409 0.591 25 H 0.400 0.600 26 H 0.152 0.848 27 H 0.153 0.847 28 H 0.126 0.874 29 H 0.339 0.661 30 H 0.315 0.685 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.383 9.109 10.342 15.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.259 6.259 3 C -0.058 4.058 4 C 0.086 3.914 5 N -0.406 5.406 6 C -0.226 4.226 7 C -0.094 4.094 8 C -0.194 4.194 9 C -0.039 4.039 10 C 0.112 3.888 11 H 0.055 0.945 12 N -0.370 5.370 13 C -0.568 4.568 14 H 0.041 0.959 15 C -0.185 4.185 16 N -0.581 5.581 17 Si 0.765 3.235 18 H -0.177 1.177 19 H -0.218 1.218 20 H -0.176 1.176 21 H 0.077 0.923 22 H 0.048 0.952 23 H 0.121 0.879 24 H 0.240 0.760 25 H 0.229 0.771 26 H 0.170 0.830 27 H 0.170 0.830 28 H 0.144 0.856 29 H 0.153 0.847 30 H 0.130 0.870 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.808 9.186 10.638 15.617 hybrid contribution 0.240 -1.253 -0.991 1.615 sum -6.568 7.934 9.647 14.112 Atomic orbital electron populations 1.23082 0.79743 1.03561 1.00240 1.86138 1.20055 1.25447 1.94247 1.18182 1.06888 0.89288 0.91457 1.18148 0.94864 0.92383 0.86020 1.42232 1.69512 1.24737 1.04073 1.20734 1.07093 0.95092 0.99706 1.21203 0.97156 0.99995 0.91035 1.20831 1.03889 0.95389 0.99310 1.20154 0.95806 0.93977 0.93947 1.18060 0.95043 0.88271 0.87430 0.94536 1.59727 1.35227 1.33628 1.08436 1.21661 1.09662 1.19358 1.06073 0.95881 1.25899 0.98551 0.94243 0.99803 1.70055 1.36989 1.24070 1.27005 0.85930 0.80402 0.77757 0.79400 1.17704 1.21770 1.17565 0.92323 0.95231 0.87904 0.76005 0.77149 0.83002 0.82965 0.85648 0.84714 0.86954 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.92 10.84 113.37 1.23 2.15 16 2 O -0.34 -14.44 8.99 -93.66 -0.84 -15.28 16 3 C -0.01 -0.42 5.71 22.59 0.13 -0.29 16 4 C 0.19 6.32 6.77 38.22 0.26 6.58 16 5 N -0.86 -21.32 9.09 -51.05 -0.46 -21.78 16 6 C -0.20 -5.81 9.89 22.38 0.22 -5.59 16 7 C -0.08 -2.27 10.04 22.27 0.22 -2.05 16 8 C -0.17 -6.61 9.25 22.28 0.21 -6.40 16 9 C -0.04 -1.67 5.03 -19.79 -0.10 -1.77 16 10 C 0.22 11.01 2.13 43.42 0.09 11.11 16 11 H 0.04 1.91 5.61 -2.39 -0.01 1.89 16 12 N -0.84 -36.94 8.62 -174.94 -1.51 -38.45 16 13 C -0.53 -31.35 9.29 25.60 0.24 -31.11 16 14 H 0.02 1.56 7.98 -2.91 -0.02 1.54 16 15 C 0.01 0.78 5.47 84.66 0.46 1.25 16 16 N -0.94 -59.72 13.96 21.45 0.30 -59.42 16 17 Si 0.94 44.39 24.61 68.60 1.69 46.08 16 18 H -0.25 -10.89 7.01 99.48 0.70 -10.19 16 19 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 20 H -0.25 -11.38 6.54 99.48 0.65 -10.73 16 21 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 22 H 0.03 1.03 7.12 -2.39 -0.02 1.01 16 23 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 24 H 0.41 7.19 8.85 -92.71 -0.82 6.37 16 25 H 0.40 9.80 8.19 -92.71 -0.76 9.04 16 26 H 0.15 3.13 8.06 -2.91 -0.02 3.10 16 27 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 28 H 0.13 4.53 6.24 -2.91 -0.02 4.51 16 29 H 0.34 14.22 7.28 -89.69 -0.65 13.57 16 30 H 0.31 13.87 4.29 -89.70 -0.39 13.49 16 31 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -72.16 256.62 0.64 -71.51 By element: Atomic # 1 Polarization: 44.95 SS G_CDS: -1.49 Total: 43.45 kcal Atomic # 6 Polarization: -29.08 SS G_CDS: 2.96 Total: -26.11 kcal Atomic # 7 Polarization: -117.98 SS G_CDS: -1.67 Total: -119.65 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.84 Total: -15.28 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.69 Total: 46.08 kcal Total: -72.16 0.64 -71.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238426395.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.158 kcal (2) G-P(sol) polarization free energy of solvation -72.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds