Wall clock time and date at job start Mon Mar 30 2020 02:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.46896 * 2 1 4 4 C 1.52998 * 109.46901 * 119.99669 * 2 1 3 5 5 O 1.42897 * 109.47368 * 300.00466 * 4 2 1 6 6 C 1.50695 * 109.46955 * 240.00015 * 2 1 3 7 7 C 1.38626 * 119.34489 * 65.00150 * 6 2 1 8 8 C 1.38013 * 119.42350 * 179.97438 * 7 6 2 9 9 C 1.41103 * 118.20072 * 359.97438 * 8 7 6 10 10 C 1.41402 * 120.66217 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00204 * 150.52423 * 10 9 8 12 12 C 1.39950 * 120.00395 * 330.53049 * 10 9 8 13 13 N 1.30826 * 120.00060 * 161.73506 * 12 10 9 14 14 Si 1.86802 * 119.99701 * 341.73510 * 12 10 9 15 15 H 1.48493 * 109.47092 * 95.40633 * 14 12 10 16 16 H 1.48498 * 109.46951 * 215.40918 * 14 12 10 17 17 H 1.48500 * 109.46827 * 335.40642 * 14 12 10 18 18 C 1.40721 * 118.67476 * 359.97438 * 9 8 7 19 19 N 1.31496 * 120.39989 * 359.72735 * 18 9 8 20 20 H 1.09002 * 109.47346 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47494 * 299.99929 * 1 2 3 22 22 H 1.08999 * 109.47665 * 60.00335 * 1 2 3 23 23 H 1.00904 * 110.99897 * 56.04663 * 3 2 1 24 24 H 1.00901 * 111.00162 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47254 * 60.00334 * 4 2 1 26 26 H 1.08998 * 109.46726 * 180.02562 * 4 2 1 27 27 H 0.96703 * 114.00260 * 180.02562 * 5 4 2 28 28 H 1.07998 * 120.28595 * 359.97433 * 7 6 2 29 29 H 1.08001 * 120.89794 * 180.02562 * 8 7 6 30 30 H 0.96997 * 119.99286 * 180.02562 * 13 12 10 31 31 H 1.08004 * 119.79695 * 180.02562 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 1.5635 -0.0476 2.4160 6 6 2.0323 -0.7104 -1.2304 7 6 1.7772 -0.1673 -2.4801 8 6 2.2370 -0.8163 -3.6081 9 6 2.9558 -2.0186 -3.4392 10 6 3.4502 -2.7266 -4.5589 11 1 4.3455 -3.3237 -4.4681 12 6 2.7793 -2.6536 -5.7850 13 7 3.3947 -2.9927 -6.8886 14 14 1.0052 -2.0719 -5.8457 15 1 0.9708 -0.6196 -6.1532 16 1 0.2753 -2.8189 -6.9014 17 1 0.3594 -2.3150 -4.5308 18 6 3.1709 -2.4991 -2.1341 19 7 2.7135 -1.8338 -1.0963 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.6441 1.9013 0.7814 24 1 3.0282 1.4120 0.0004 25 1 1.6766 -1.7489 1.2493 26 1 3.1299 -0.7208 1.2495 27 1 1.8491 -0.4508 3.2472 28 1 1.2236 0.7556 -2.5702 29 1 2.0522 -0.4142 -4.5933 30 1 2.9298 -2.9417 -7.7383 31 1 3.7192 -3.4175 -1.9839 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238441661.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:57 Heat of formation + Delta-G solvation = -54.794286 kcal Electronic energy + Delta-G solvation = -15098.569214 eV Core-core repulsion = 12571.132473 eV Total energy + Delta-G solvation = -2527.436741 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.85954 -38.61019 -36.23059 -35.38351 -33.17057 -31.81613 -29.99105 -27.73451 -26.76066 -24.28774 -23.12424 -20.90425 -19.36490 -18.60128 -17.49226 -17.00580 -16.61936 -16.17832 -15.75009 -15.36920 -15.11340 -14.72326 -14.62408 -13.92841 -13.79349 -13.60003 -13.22544 -12.80251 -12.77244 -12.41540 -12.23608 -11.95853 -11.78441 -11.36514 -10.94557 -10.26690 -10.07538 -9.62332 -9.50972 -8.99064 -6.59384 0.56265 0.76157 1.22995 1.35076 1.44060 2.05753 2.54220 3.23388 3.41059 3.54407 3.97464 4.12779 4.22856 4.29100 4.42174 4.67033 4.73588 4.79411 4.80771 4.95279 5.01895 5.09030 5.31577 5.34508 5.56202 5.70091 5.89062 6.21637 6.26139 6.51636 6.65871 6.70004 6.86775 7.53360 8.07655 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.050066 B = 0.007901 C = 0.007357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.125195 B = 3543.073588 C = 3804.916737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.191 3.809 3 N -0.829 5.829 4 C 0.075 3.925 5 O -0.581 6.581 6 C -0.003 4.003 7 C -0.091 4.091 8 C -0.222 4.222 9 C 0.032 3.968 10 C -0.467 4.467 11 H 0.068 0.932 12 C 0.053 3.947 13 N -0.834 5.834 14 Si 0.960 3.040 15 H -0.255 1.255 16 H -0.272 1.272 17 H -0.259 1.259 18 C -0.010 4.010 19 N -0.460 5.460 20 H 0.048 0.952 21 H 0.074 0.926 22 H 0.058 0.942 23 H 0.353 0.647 24 H 0.339 0.661 25 H 0.043 0.957 26 H 0.038 0.962 27 H 0.395 0.605 28 H 0.131 0.869 29 H 0.109 0.891 30 H 0.298 0.702 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.442 5.444 10.860 13.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.097 3.903 3 N -0.360 5.360 4 C -0.005 4.005 5 O -0.389 6.389 6 C -0.140 4.140 7 C -0.111 4.111 8 C -0.248 4.248 9 C 0.028 3.972 10 C -0.497 4.497 11 H 0.086 0.914 12 C -0.164 4.164 13 N -0.459 5.459 14 Si 0.784 3.216 15 H -0.181 1.181 16 H -0.198 1.198 17 H -0.183 1.183 18 C -0.173 4.173 19 N -0.168 5.168 20 H 0.067 0.933 21 H 0.093 0.907 22 H 0.077 0.923 23 H 0.167 0.833 24 H 0.151 0.849 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.245 0.755 28 H 0.149 0.851 29 H 0.127 0.873 30 H 0.108 0.892 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.890 5.532 10.268 13.066 hybrid contribution 0.462 -0.550 -0.187 0.743 sum -5.428 4.982 10.080 12.486 Atomic orbital electron populations 1.21684 0.92645 1.01414 1.02479 1.19134 0.95325 0.87478 0.88316 1.58824 1.13824 1.11744 1.51583 1.22516 0.96921 0.95397 0.85660 1.86302 1.77877 1.57914 1.16781 1.20468 1.04594 0.95290 0.93602 1.21478 0.98024 0.99195 0.92400 1.21545 1.07745 0.97226 0.98261 1.18735 0.91710 0.92015 0.94749 1.19435 1.10695 1.26500 0.93041 0.91369 1.26779 1.03746 0.91911 0.93990 1.69698 1.39688 1.36432 1.00083 0.85555 0.77764 0.79208 0.79092 1.18057 1.19780 1.18339 1.22672 1.06221 1.00634 0.87784 1.66852 1.07788 1.07204 1.35003 0.93257 0.90717 0.92328 0.83252 0.84876 0.93839 0.94334 0.75521 0.85126 0.87290 0.89170 0.84116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.66 8.44 71.98 0.61 -3.05 16 2 C 0.19 6.10 0.81 2.78 0.00 6.10 16 3 N -0.83 -23.43 8.60 -154.54 -1.33 -24.76 16 4 C 0.08 2.17 5.31 71.98 0.38 2.56 16 5 O -0.58 -13.34 12.48 -148.98 -1.86 -15.20 16 6 C 0.00 -0.10 5.75 42.62 0.24 0.14 16 7 C -0.09 -3.82 9.01 22.31 0.20 -3.62 16 8 C -0.22 -10.43 7.30 22.92 0.17 -10.27 16 9 C 0.03 1.64 5.12 -21.19 -0.11 1.53 16 10 C -0.47 -25.27 9.60 23.46 0.23 -25.05 16 11 H 0.07 3.91 8.06 -2.91 -0.02 3.89 16 12 C 0.05 2.72 5.42 85.26 0.46 3.18 16 13 N -0.83 -43.90 13.93 21.83 0.30 -43.60 16 14 Si 0.96 41.49 24.53 68.60 1.68 43.18 16 15 H -0.26 -10.42 6.70 99.48 0.67 -9.76 16 16 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 17 H -0.26 -11.68 6.85 99.48 0.68 -10.99 16 18 C -0.01 -0.49 10.98 85.35 0.94 0.45 16 19 N -0.46 -20.02 8.95 -181.69 -1.63 -21.65 16 20 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 21 H 0.07 1.94 7.68 -2.39 -0.02 1.93 16 22 H 0.06 1.73 7.65 -2.39 -0.02 1.71 16 23 H 0.35 8.65 8.51 -89.69 -0.76 7.89 16 24 H 0.34 9.59 8.99 -89.69 -0.81 8.78 16 25 H 0.04 1.36 7.98 -2.39 -0.02 1.34 16 26 H 0.04 1.17 8.11 -2.39 -0.02 1.15 16 27 H 0.40 5.55 9.12 -74.06 -0.68 4.87 16 28 H 0.13 4.90 7.85 -2.91 -0.02 4.88 16 29 H 0.11 5.04 4.79 -2.91 -0.01 5.03 16 30 H 0.30 14.00 8.30 -92.71 -0.77 13.23 16 31 H 0.14 6.24 8.06 -2.91 -0.02 6.21 16 Total: -1.00 -57.80 260.11 -0.84 -58.64 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: -1.14 Total: 31.41 kcal Atomic # 6 Polarization: -31.14 SS G_CDS: 3.12 Total: -28.02 kcal Atomic # 7 Polarization: -87.36 SS G_CDS: -2.65 Total: -90.01 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -1.86 Total: -15.20 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 1.68 Total: 43.18 kcal Total: -57.80 -0.84 -58.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238441661.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.845 kcal (2) G-P(sol) polarization free energy of solvation -57.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds