Wall clock time and date at job start Mon Mar 30 2020 03:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 119.99915 * 2 1 4 4 C 1.53002 * 109.47125 * 270.00117 * 3 2 1 5 5 C 1.50695 * 109.47085 * 180.02562 * 4 3 2 6 6 C 1.40900 * 126.29168 * 270.29645 * 5 4 3 7 7 C 1.34850 * 107.41621 * 180.12828 * 6 5 4 8 8 N 1.36348 * 108.21820 * 359.62102 * 7 6 5 9 9 H 0.97004 * 125.63569 * 180.26281 * 8 7 6 10 10 C 1.34858 * 126.29153 * 90.00035 * 5 4 3 11 11 C 1.34779 * 119.99917 * 180.02562 * 2 1 3 12 12 O 1.21684 * 119.99932 * 179.97438 * 11 2 1 13 13 C 1.46371 * 119.99852 * 359.97438 * 11 2 1 14 14 H 1.07999 * 120.00005 * 0.02562 * 13 11 2 15 15 C 1.40053 * 120.00024 * 180.02562 * 13 11 2 16 16 N 1.30674 * 119.99678 * 359.97438 * 15 13 11 17 17 Si 1.86793 * 120.00278 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47337 * 89.99745 * 17 15 13 19 19 H 1.48496 * 109.47318 * 210.00096 * 17 15 13 20 20 H 1.48501 * 109.46847 * 329.99921 * 17 15 13 21 21 H 1.09000 * 109.47125 * 89.99330 * 1 2 3 22 22 H 1.08998 * 109.46990 * 210.00093 * 1 2 3 23 23 H 1.09009 * 109.46909 * 329.99796 * 1 2 3 24 24 H 1.08999 * 109.47188 * 150.00302 * 3 2 1 25 25 H 1.08999 * 109.47526 * 30.00117 * 3 2 1 26 26 H 1.08999 * 109.46937 * 60.00031 * 4 3 2 27 27 H 1.08999 * 109.46918 * 300.00371 * 4 3 2 28 28 H 1.07999 * 126.29093 * 359.97438 * 6 5 4 29 29 H 1.08002 * 125.89234 * 179.89015 * 7 6 5 30 30 H 1.07990 * 125.89063 * 359.97438 * 10 5 4 31 31 H 0.96996 * 119.99814 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2065 3.0152 -1.4425 6 6 2.6405 4.3055 -1.4364 7 6 3.6566 5.1920 -1.4416 8 7 4.8293 4.4963 -1.4421 9 1 5.7176 4.8860 -1.4418 10 6 4.5470 3.1624 -1.4427 11 6 2.1389 -1.1672 -0.0005 12 8 3.3557 -1.1672 -0.0010 13 6 1.4070 -2.4348 -0.0005 14 1 0.3270 -2.4348 -0.0005 15 6 2.1072 -3.6477 -0.0005 16 7 3.4139 -3.6477 -0.0010 17 14 1.1732 -5.2654 -0.0012 18 1 0.9262 -5.6938 -1.4015 19 1 1.9755 -6.3005 0.6989 20 1 -0.1246 -5.0879 0.6984 21 1 -0.3633 0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 3.1499 1.1384 0.5138 25 1 1.6085 2.0284 0.5138 26 1 1.5000 1.8408 -1.9563 27 1 3.0415 0.9508 -1.9563 28 1 1.5865 4.5412 -1.4313 29 1 3.5586 6.2676 -1.4407 30 1 5.2718 2.3619 -1.4425 31 1 3.8989 -4.4877 -0.0014 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258746860.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:45 Heat of formation + Delta-G solvation = 7.260530 kcal Electronic energy + Delta-G solvation = -14692.201803 eV Core-core repulsion = 12167.455961 eV Total energy + Delta-G solvation = -2524.745842 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.76824 -37.60161 -34.25089 -32.37188 -32.22655 -29.48936 -27.86902 -25.99389 -25.13445 -22.54028 -20.55589 -19.07377 -18.82939 -17.74386 -16.34226 -15.51165 -14.49404 -14.17828 -13.96755 -13.52073 -13.42766 -13.29351 -12.68231 -12.30101 -11.77985 -11.52290 -11.45872 -11.29938 -11.19787 -10.96715 -10.85690 -10.27475 -10.07008 -9.89989 -8.80016 -8.45915 -7.87845 -7.48485 -7.04227 -6.12681 -4.57386 2.52200 3.17483 3.24113 3.26355 3.27832 3.56600 4.15183 4.63687 4.77611 5.27889 5.52293 5.66097 5.81045 5.85353 5.95912 6.12286 6.21226 6.32948 6.46836 6.49316 6.58599 6.64272 6.86406 6.96178 7.26708 7.44584 7.50800 7.76232 7.81198 8.23876 8.46339 9.08865 9.53642 10.65489 10.85086 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.056465 B = 0.005988 C = 0.005545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.761712 B = 4674.929110 C = 5048.613217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.651 5.651 3 C 0.137 3.863 4 C -0.061 4.061 5 C -0.151 4.151 6 C -0.196 4.196 7 C -0.028 4.028 8 N -0.565 5.565 9 H 0.410 0.590 10 C -0.014 4.014 11 C 0.557 3.443 12 O -0.578 6.578 13 C -0.544 4.544 14 H 0.072 0.928 15 C 0.087 3.913 16 N -0.769 5.769 17 Si 0.905 3.095 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.265 1.265 21 H 0.029 0.971 22 H 0.070 0.930 23 H 0.039 0.961 24 H 0.069 0.931 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.131 0.869 29 H 0.158 0.842 30 H 0.164 0.836 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.547 12.568 -2.206 12.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.388 5.388 3 C 0.013 3.987 4 C -0.101 4.101 5 C -0.158 4.158 6 C -0.222 4.222 7 C -0.159 4.159 8 N -0.160 5.160 9 H 0.246 0.754 10 C -0.144 4.144 11 C 0.362 3.638 12 O -0.460 6.460 13 C -0.581 4.581 14 H 0.090 0.910 15 C -0.132 4.132 16 N -0.398 5.398 17 Si 0.730 3.270 18 H -0.198 1.198 19 H -0.205 1.205 20 H -0.189 1.189 21 H 0.048 0.952 22 H 0.088 0.912 23 H 0.058 0.942 24 H 0.087 0.913 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.149 0.851 29 H 0.175 0.825 30 H 0.181 0.819 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.568 12.508 -2.187 12.710 hybrid contribution -0.199 -0.524 -0.067 0.564 sum -0.767 11.984 -2.254 12.218 Atomic orbital electron populations 1.21377 0.82426 1.00872 0.99468 1.48007 1.05094 1.05669 1.80075 1.20964 0.97376 0.85652 0.94707 1.20371 0.98585 0.92204 0.98902 1.19621 0.92819 0.95074 1.08261 1.20847 0.98283 0.92343 1.10701 1.21730 0.84997 0.97326 1.11806 1.41943 1.08049 1.06589 1.59466 0.75435 1.21818 0.97324 0.84802 1.10483 1.18226 0.86984 0.82325 0.76255 1.90579 1.14026 1.86416 1.54998 1.21040 0.93713 0.89387 1.53982 0.91020 1.25734 0.94585 1.00251 0.92637 1.70029 1.07051 1.27107 1.35608 0.86412 0.80198 0.81579 0.78800 1.19774 1.20530 1.18906 0.95231 0.91185 0.94179 0.91286 0.93204 0.92286 0.91253 0.85119 0.82497 0.81906 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.00 10.19 59.85 0.61 2.61 16 2 N -0.65 -15.48 2.87 -183.24 -0.53 -16.00 16 3 C 0.14 2.88 5.43 -4.04 -0.02 2.86 16 4 C -0.06 -1.17 6.04 -27.88 -0.17 -1.34 16 5 C -0.15 -2.53 5.39 -104.82 -0.57 -3.10 16 6 C -0.20 -2.85 10.81 -39.78 -0.43 -3.28 16 7 C -0.03 -0.34 11.94 -16.75 -0.20 -0.54 16 8 N -0.57 -6.72 6.07 -12.85 -0.08 -6.80 16 9 H 0.41 3.39 8.96 -40.82 -0.37 3.02 16 10 C -0.01 -0.21 11.85 -16.75 -0.20 -0.41 16 11 C 0.56 16.26 7.61 -12.99 -0.10 16.16 16 12 O -0.58 -18.92 14.60 5.20 0.08 -18.85 16 13 C -0.54 -15.60 8.74 -35.63 -0.31 -15.91 16 14 H 0.07 1.88 6.00 -52.49 -0.31 1.56 16 15 C 0.09 2.47 5.50 -17.36 -0.10 2.37 16 16 N -0.77 -23.32 11.83 55.55 0.66 -22.67 16 17 Si 0.91 20.35 29.56 -169.99 -5.02 15.32 16 18 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 21 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.07 1.39 6.09 -51.93 -0.32 1.07 16 23 H 0.04 0.65 7.89 -51.92 -0.41 0.24 16 24 H 0.07 1.61 7.42 -51.93 -0.39 1.22 16 25 H 0.05 0.92 7.89 -51.93 -0.41 0.51 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 28 H 0.13 1.71 8.06 -52.49 -0.42 1.28 16 29 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.16 2.40 8.06 -52.49 -0.42 1.98 16 31 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 LS Contribution 270.91 15.07 4.08 4.08 Total: -1.00 -35.34 270.91 -6.17 -41.51 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -3.87 Total: 3.99 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -1.48 Total: -0.58 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.05 Total: -45.47 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.08 Total: -18.85 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -35.34 -6.17 -41.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258746860.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.770 kcal (2) G-P(sol) polarization free energy of solvation -35.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds