Wall clock time and date at job start Mon Mar 30 2020 03:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 119.99915 * 2 1 4 4 C 1.53002 * 109.47125 * 270.00117 * 3 2 1 5 5 C 1.50695 * 109.47085 * 180.02562 * 4 3 2 6 6 C 1.40900 * 126.29168 * 270.29645 * 5 4 3 7 7 C 1.34850 * 107.41621 * 180.12828 * 6 5 4 8 8 N 1.36348 * 108.21820 * 359.62102 * 7 6 5 9 9 H 0.97004 * 125.63569 * 180.26281 * 8 7 6 10 10 C 1.34858 * 126.29153 * 90.00035 * 5 4 3 11 11 C 1.34779 * 119.99917 * 180.02562 * 2 1 3 12 12 O 1.21684 * 119.99932 * 179.97438 * 11 2 1 13 13 C 1.46371 * 119.99852 * 359.97438 * 11 2 1 14 14 H 1.07999 * 120.00005 * 0.02562 * 13 11 2 15 15 C 1.40053 * 120.00024 * 180.02562 * 13 11 2 16 16 N 1.30674 * 119.99678 * 359.97438 * 15 13 11 17 17 Si 1.86793 * 120.00278 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47337 * 89.99745 * 17 15 13 19 19 H 1.48496 * 109.47318 * 210.00096 * 17 15 13 20 20 H 1.48501 * 109.46847 * 329.99921 * 17 15 13 21 21 H 1.09000 * 109.47125 * 89.99330 * 1 2 3 22 22 H 1.08998 * 109.46990 * 210.00093 * 1 2 3 23 23 H 1.09009 * 109.46909 * 329.99796 * 1 2 3 24 24 H 1.08999 * 109.47188 * 150.00302 * 3 2 1 25 25 H 1.08999 * 109.47526 * 30.00117 * 3 2 1 26 26 H 1.08999 * 109.46937 * 60.00031 * 4 3 2 27 27 H 1.08999 * 109.46918 * 300.00371 * 4 3 2 28 28 H 1.07999 * 126.29093 * 359.97438 * 6 5 4 29 29 H 1.08002 * 125.89234 * 179.89015 * 7 6 5 30 30 H 1.07990 * 125.89063 * 359.97438 * 10 5 4 31 31 H 0.96996 * 119.99814 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2065 3.0152 -1.4425 6 6 2.6405 4.3055 -1.4364 7 6 3.6566 5.1920 -1.4416 8 7 4.8293 4.4963 -1.4421 9 1 5.7176 4.8860 -1.4418 10 6 4.5470 3.1624 -1.4427 11 6 2.1389 -1.1672 -0.0005 12 8 3.3557 -1.1672 -0.0010 13 6 1.4070 -2.4348 -0.0005 14 1 0.3270 -2.4348 -0.0005 15 6 2.1072 -3.6477 -0.0005 16 7 3.4139 -3.6477 -0.0010 17 14 1.1732 -5.2654 -0.0012 18 1 0.9262 -5.6938 -1.4015 19 1 1.9755 -6.3005 0.6989 20 1 -0.1246 -5.0879 0.6984 21 1 -0.3633 0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 3.1499 1.1384 0.5138 25 1 1.6085 2.0284 0.5138 26 1 1.5000 1.8408 -1.9563 27 1 3.0415 0.9508 -1.9563 28 1 1.5865 4.5412 -1.4313 29 1 3.5586 6.2676 -1.4407 30 1 5.2718 2.3619 -1.4425 31 1 3.8989 -4.4877 -0.0014 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258746860.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:44 Heat of formation + Delta-G solvation = -17.434944 kcal Electronic energy + Delta-G solvation = -14693.272679 eV Core-core repulsion = 12167.455961 eV Total energy + Delta-G solvation = -2525.816718 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.86182 -39.63525 -36.19727 -34.56271 -33.73909 -30.70196 -29.31153 -27.98655 -26.81126 -24.29094 -21.60368 -20.96533 -20.13078 -18.86632 -18.37060 -17.62431 -16.31319 -16.01240 -15.55634 -14.90386 -14.79495 -14.45864 -14.16758 -13.91567 -13.42452 -13.24838 -13.11067 -12.96352 -12.87909 -12.70418 -12.57319 -12.15445 -11.98834 -11.58972 -10.90575 -9.75989 -9.60591 -9.12692 -8.83274 -8.25554 -6.81050 1.40997 1.42551 1.44116 1.57985 2.07831 2.26889 2.50042 2.60213 2.99696 3.66073 4.09854 4.39490 4.44298 4.55527 4.56683 4.62617 4.68074 4.87169 4.96318 5.04007 5.05874 5.26148 5.33747 5.39871 5.57808 5.82056 6.10226 6.19157 6.27520 6.47797 6.89595 6.90588 7.47336 8.51681 8.71314 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.056465 B = 0.005988 C = 0.005545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.761712 B = 4674.929110 C = 5048.613217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.654 5.654 3 C 0.141 3.859 4 C -0.045 4.045 5 C -0.180 4.180 6 C -0.220 4.220 7 C -0.004 4.004 8 N -0.550 5.550 9 H 0.429 0.571 10 C -0.032 4.032 11 C 0.536 3.464 12 O -0.630 6.630 13 C -0.571 4.571 14 H 0.093 0.907 15 C 0.027 3.973 16 N -0.824 5.824 17 Si 0.997 3.003 18 H -0.262 1.262 19 H -0.274 1.274 20 H -0.247 1.247 21 H 0.043 0.957 22 H 0.064 0.936 23 H 0.078 0.922 24 H 0.034 0.966 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.026 0.974 28 H 0.145 0.855 29 H 0.202 0.798 30 H 0.155 0.845 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.439 13.820 -2.254 14.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.390 5.390 3 C 0.017 3.983 4 C -0.085 4.085 5 C -0.187 4.187 6 C -0.244 4.244 7 C -0.135 4.135 8 N -0.146 5.146 9 H 0.268 0.732 10 C -0.164 4.164 11 C 0.342 3.658 12 O -0.518 6.518 13 C -0.607 4.607 14 H 0.111 0.889 15 C -0.187 4.187 16 N -0.454 5.454 17 Si 0.816 3.184 18 H -0.187 1.187 19 H -0.199 1.199 20 H -0.170 1.170 21 H 0.061 0.939 22 H 0.082 0.918 23 H 0.096 0.904 24 H 0.052 0.948 25 H 0.101 0.899 26 H 0.087 0.913 27 H 0.045 0.955 28 H 0.162 0.838 29 H 0.219 0.781 30 H 0.172 0.828 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.488 13.824 -2.237 14.223 hybrid contribution 0.406 -0.776 -0.052 0.877 sum -2.082 13.048 -2.288 13.410 Atomic orbital electron populations 1.21582 0.79470 1.02486 1.00817 1.47943 1.07106 1.05209 1.78792 1.21044 0.96045 0.85180 0.95981 1.20085 0.98703 0.92606 0.97071 1.19558 0.93583 0.94962 1.10593 1.21055 0.99765 0.91412 1.12215 1.22382 0.83881 0.98985 1.08245 1.41936 1.09404 1.05263 1.58017 0.73204 1.21753 0.96931 0.86369 1.11310 1.18686 0.86705 0.84318 0.76088 1.90527 1.16239 1.87652 1.57339 1.21570 0.94932 0.89907 1.54293 0.88878 1.27022 0.95500 1.05006 0.91216 1.70211 1.09603 1.28775 1.36777 0.85039 0.78882 0.75102 0.79400 1.18672 1.19883 1.16970 0.93890 0.91774 0.90352 0.94786 0.89943 0.91251 0.95493 0.83769 0.78079 0.82793 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.69 10.19 127.77 1.30 5.00 16 2 N -0.65 -31.59 2.87 -851.87 -2.45 -34.03 16 3 C 0.14 6.04 5.43 86.38 0.47 6.51 16 4 C -0.05 -1.78 6.04 29.85 0.18 -1.60 16 5 C -0.18 -6.04 5.39 -19.99 -0.11 -6.15 16 6 C -0.22 -5.91 10.81 22.14 0.24 -5.67 16 7 C 0.00 -0.07 11.94 83.21 0.99 0.92 16 8 N -0.55 -11.96 6.07 -194.56 -1.18 -13.14 16 9 H 0.43 6.02 8.96 -92.71 -0.83 5.19 16 10 C -0.03 -0.99 11.85 83.22 0.99 0.00 16 11 C 0.54 32.53 7.61 86.36 0.66 33.18 16 12 O -0.63 -43.81 14.60 -4.30 -0.06 -43.87 16 13 C -0.57 -33.18 8.74 24.83 0.22 -32.97 16 14 H 0.09 4.82 6.00 -2.91 -0.02 4.81 16 15 C 0.03 1.55 5.50 85.31 0.47 2.02 16 16 N -0.82 -51.74 11.83 21.84 0.26 -51.48 16 17 Si 1.00 41.71 29.56 68.60 2.03 43.74 16 18 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 19 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 20 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 21 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.06 2.45 6.09 -2.39 -0.01 2.44 16 23 H 0.08 2.31 7.89 -2.38 -0.02 2.29 16 24 H 0.03 1.67 7.42 -2.39 -0.02 1.66 16 25 H 0.08 2.95 7.89 -2.39 -0.02 2.94 16 26 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 27 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 29 H 0.20 2.34 8.06 -2.91 -0.02 2.32 16 30 H 0.15 4.88 8.06 -2.92 -0.02 4.86 16 31 H 0.27 15.50 8.29 -92.71 -0.77 14.74 16 Total: -1.00 -81.00 270.91 4.31 -76.70 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 0.30 Total: 20.85 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: 5.41 Total: 1.24 kcal Atomic # 7 Polarization: -95.28 SS G_CDS: -3.37 Total: -98.66 kcal Atomic # 8 Polarization: -43.81 SS G_CDS: -0.06 Total: -43.87 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -81.00 4.31 -76.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258746860.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.263 kcal (2) G-P(sol) polarization free energy of solvation -81.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds