Wall clock time and date at job start Mon Mar 30 2020 03:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46493 * 120.00444 * 2 1 4 4 C 1.50702 * 109.47427 * 269.72511 * 3 2 1 5 5 C 1.34850 * 125.88861 * 94.99702 * 4 3 2 6 6 C 1.40889 * 107.41623 * 180.02562 * 5 4 3 7 7 C 1.34848 * 107.41819 * 0.02562 * 6 5 4 8 8 N 1.36338 * 125.89119 * 274.68981 * 4 3 2 9 9 H 0.96997 * 125.63622 * 359.97438 * 8 4 3 10 10 C 1.34784 * 119.99635 * 179.72711 * 2 1 3 11 11 O 1.21283 * 119.99649 * 180.02562 * 10 2 1 12 12 C 1.50694 * 119.99988 * 0.02562 * 10 2 1 13 13 C 1.50698 * 109.47166 * 179.97438 * 12 10 2 14 14 H 1.08001 * 120.00262 * 0.02562 * 13 12 10 15 15 C 1.37878 * 120.00084 * 179.97438 * 13 12 10 16 16 N 1.31513 * 120.00095 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99895 * 180.02562 * 15 13 12 18 18 H 1.48509 * 109.47198 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47470 * 120.00079 * 17 15 13 20 20 H 1.48501 * 109.47057 * 240.00285 * 17 15 13 21 21 H 1.08995 * 109.47693 * 270.27497 * 1 2 3 22 22 H 1.09003 * 109.47006 * 30.27410 * 1 2 3 23 23 H 1.09004 * 109.47665 * 150.27102 * 1 2 3 24 24 H 1.09002 * 109.47192 * 29.72648 * 3 2 1 25 25 H 1.08996 * 109.47342 * 149.72358 * 3 2 1 26 26 H 1.07999 * 126.29504 * 0.02664 * 5 4 3 27 27 H 1.07998 * 126.29066 * 179.97438 * 6 5 4 28 28 H 1.08001 * 125.89373 * 180.02562 * 7 6 5 29 29 H 1.08998 * 109.47224 * 299.99701 * 12 10 2 30 30 H 1.09002 * 109.47054 * 60.00213 * 12 10 2 31 31 H 0.97003 * 119.99629 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4546 1.7003 -1.4208 5 6 1.6918 2.5487 -2.1396 6 6 2.2863 2.6769 -3.4104 7 6 3.3895 1.9015 -3.4201 8 7 3.5019 1.3050 -2.1992 9 1 4.2083 0.6972 -1.9300 10 6 2.1388 -1.1673 0.0056 11 8 3.3516 -1.1673 0.0060 12 6 1.3852 -2.4723 0.0112 13 6 2.3644 -3.6178 0.0161 14 1 3.4263 -3.4205 0.0157 15 6 1.9048 -4.9177 0.0223 16 7 0.6118 -5.1579 0.0233 17 14 3.1186 -6.3375 0.0291 18 1 4.5045 -5.8040 0.0261 19 1 2.9081 -7.1629 1.2455 20 1 2.9083 -7.1744 -1.1795 21 1 -0.3634 0.0049 1.0276 22 1 -0.3633 0.8875 -0.5181 23 1 -0.3634 -0.8924 -0.5096 24 1 1.6064 2.0295 0.5096 25 1 3.1477 1.1395 0.5181 26 1 0.7907 3.0398 -1.8030 27 1 1.9245 3.2839 -4.2271 28 1 4.0701 1.7789 -4.2496 29 1 0.7583 -2.5260 0.9012 30 1 0.7589 -2.5340 -0.8788 31 1 0.2884 -6.0725 0.0280 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258746975.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:05 Heat of formation + Delta-G solvation = 5.087604 kcal Electronic energy + Delta-G solvation = -14886.952187 eV Core-core repulsion = 12362.112120 eV Total energy + Delta-G solvation = -2524.840067 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.88188 -38.77719 -34.93232 -32.99645 -30.66082 -30.59705 -28.58885 -26.51509 -25.11894 -23.01934 -20.33584 -20.00940 -18.65691 -17.31139 -16.54958 -15.68298 -15.47238 -14.74428 -14.35533 -13.66427 -13.46919 -13.17987 -12.68313 -12.50782 -12.37890 -12.14449 -12.06347 -11.78263 -11.38658 -11.17044 -10.75692 -10.66035 -9.97889 -9.23647 -8.78057 -8.63764 -8.46089 -8.21716 -7.81801 -6.07863 -4.07494 2.42305 3.14498 3.31204 3.38323 3.46207 3.57182 3.67611 3.86114 4.46278 5.17898 5.23179 5.30294 5.37538 5.56213 5.62269 5.74374 5.87423 5.94437 6.13935 6.16035 6.40958 6.48224 6.98707 7.18097 7.21614 7.31256 7.36729 7.83651 7.91982 7.95159 8.33678 9.02712 9.13761 9.57515 11.04564 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.039085 B = 0.006847 C = 0.006359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.224166 B = 4088.243638 C = 4402.384800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.629 5.629 3 C 0.179 3.821 4 C 0.010 3.990 5 C -0.197 4.197 6 C -0.207 4.207 7 C -0.017 4.017 8 N -0.543 5.543 9 H 0.419 0.581 10 C 0.518 3.482 11 O -0.550 6.550 12 C 0.007 3.993 13 C -0.508 4.508 14 H 0.074 0.926 15 C 0.055 3.945 16 N -0.900 5.900 17 Si 0.900 3.100 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.284 1.284 21 H 0.050 0.950 22 H 0.062 0.938 23 H 0.078 0.922 24 H 0.092 0.908 25 H 0.084 0.916 26 H 0.130 0.870 27 H 0.130 0.870 28 H 0.159 0.841 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.040 13.731 -2.851 14.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.364 5.364 3 C 0.055 3.945 4 C -0.105 4.105 5 C -0.222 4.222 6 C -0.232 4.232 7 C -0.149 4.149 8 N -0.137 5.137 9 H 0.256 0.744 10 C 0.310 3.690 11 O -0.427 6.427 12 C -0.032 4.032 13 C -0.547 4.547 14 H 0.092 0.908 15 C -0.146 4.146 16 N -0.540 5.540 17 Si 0.728 3.272 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.210 1.210 21 H 0.069 0.931 22 H 0.081 0.919 23 H 0.097 0.903 24 H 0.110 0.890 25 H 0.102 0.898 26 H 0.148 0.852 27 H 0.148 0.852 28 H 0.176 0.824 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.606 13.459 -2.783 13.757 hybrid contribution 0.648 -1.036 -0.065 1.224 sum 1.254 12.423 -2.848 12.807 Atomic orbital electron populations 1.21698 0.79699 1.03124 1.01293 1.48249 1.06934 1.05350 1.75877 1.19724 0.98447 0.86494 0.89846 1.20889 0.91753 1.02078 0.95821 1.20628 1.01883 1.04705 0.95019 1.20809 0.98326 1.05593 0.98502 1.21817 1.02238 1.01660 0.89215 1.42108 1.22510 1.37580 1.11492 0.74424 1.22090 0.88496 0.85745 0.72671 1.90482 1.15012 1.87426 1.49804 1.19256 0.96791 0.87802 0.99311 1.21211 0.93887 0.89519 1.50059 0.90755 1.25009 0.95339 0.99043 0.95218 1.69966 1.12508 1.20335 1.51165 0.86392 0.81505 0.81817 0.77508 1.19557 1.20950 1.21004 0.93093 0.91901 0.90302 0.89027 0.89780 0.85161 0.85163 0.82352 0.93410 0.93461 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.24 10.24 59.84 0.61 1.86 16 2 N -0.63 -11.19 2.86 -182.96 -0.52 -11.71 16 3 C 0.18 2.70 5.94 -5.20 -0.03 2.67 16 4 C 0.01 0.15 6.75 -81.79 -0.55 -0.40 16 5 C -0.20 -2.81 10.76 -39.78 -0.43 -3.24 16 6 C -0.21 -2.84 10.86 -39.78 -0.43 -3.27 16 7 C -0.02 -0.23 11.94 -16.75 -0.20 -0.43 16 8 N -0.54 -8.31 6.07 -9.12 -0.06 -8.37 16 9 H 0.42 6.43 8.96 -40.82 -0.37 6.06 16 10 C 0.52 11.81 7.67 -10.98 -0.08 11.72 16 11 O -0.55 -13.81 15.04 5.56 0.08 -13.72 16 12 C 0.01 0.19 4.01 -29.04 -0.12 0.07 16 13 C -0.51 -14.77 8.92 -34.44 -0.31 -15.08 16 14 H 0.07 2.25 6.75 -52.49 -0.35 1.89 16 15 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 17 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 18 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 22 H 0.06 0.76 8.07 -51.93 -0.42 0.34 16 23 H 0.08 1.26 6.44 -51.93 -0.33 0.92 16 24 H 0.09 1.09 8.07 -51.93 -0.42 0.67 16 25 H 0.08 1.35 7.42 -51.93 -0.39 0.97 16 26 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 27 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 28 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 29 H 0.05 1.24 8.11 -51.93 -0.42 0.82 16 30 H 0.05 1.24 7.40 -51.93 -0.38 0.86 16 31 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 272.52 15.07 4.11 4.11 Total: -1.00 -32.66 272.52 -6.22 -38.88 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -3.91 Total: 4.01 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -1.64 Total: -4.62 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: 0.16 Total: -45.75 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.08 Total: -13.72 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -32.66 -6.22 -38.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258746975.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.964 kcal (2) G-P(sol) polarization free energy of solvation -32.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds