Wall clock time and date at job start Mon Mar 30 2020 03:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46493 * 120.00444 * 2 1 4 4 C 1.50702 * 109.47427 * 269.72511 * 3 2 1 5 5 C 1.34850 * 125.88861 * 94.99702 * 4 3 2 6 6 C 1.40889 * 107.41623 * 180.02562 * 5 4 3 7 7 C 1.34848 * 107.41819 * 0.02562 * 6 5 4 8 8 N 1.36338 * 125.89119 * 274.68981 * 4 3 2 9 9 H 0.96997 * 125.63622 * 359.97438 * 8 4 3 10 10 C 1.34784 * 119.99635 * 179.72711 * 2 1 3 11 11 O 1.21283 * 119.99649 * 180.02562 * 10 2 1 12 12 C 1.50694 * 119.99988 * 0.02562 * 10 2 1 13 13 C 1.50698 * 109.47166 * 179.97438 * 12 10 2 14 14 H 1.08001 * 120.00262 * 0.02562 * 13 12 10 15 15 C 1.37878 * 120.00084 * 179.97438 * 13 12 10 16 16 N 1.31513 * 120.00095 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99895 * 180.02562 * 15 13 12 18 18 H 1.48509 * 109.47198 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47470 * 120.00079 * 17 15 13 20 20 H 1.48501 * 109.47057 * 240.00285 * 17 15 13 21 21 H 1.08995 * 109.47693 * 270.27497 * 1 2 3 22 22 H 1.09003 * 109.47006 * 30.27410 * 1 2 3 23 23 H 1.09004 * 109.47665 * 150.27102 * 1 2 3 24 24 H 1.09002 * 109.47192 * 29.72648 * 3 2 1 25 25 H 1.08996 * 109.47342 * 149.72358 * 3 2 1 26 26 H 1.07999 * 126.29504 * 0.02664 * 5 4 3 27 27 H 1.07998 * 126.29066 * 179.97438 * 6 5 4 28 28 H 1.08001 * 125.89373 * 180.02562 * 7 6 5 29 29 H 1.08998 * 109.47224 * 299.99701 * 12 10 2 30 30 H 1.09002 * 109.47054 * 60.00213 * 12 10 2 31 31 H 0.97003 * 119.99629 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4546 1.7003 -1.4208 5 6 1.6918 2.5487 -2.1396 6 6 2.2863 2.6769 -3.4104 7 6 3.3895 1.9015 -3.4201 8 7 3.5019 1.3050 -2.1992 9 1 4.2083 0.6972 -1.9300 10 6 2.1388 -1.1673 0.0056 11 8 3.3516 -1.1673 0.0060 12 6 1.3852 -2.4723 0.0112 13 6 2.3644 -3.6178 0.0161 14 1 3.4263 -3.4205 0.0157 15 6 1.9048 -4.9177 0.0223 16 7 0.6118 -5.1579 0.0233 17 14 3.1186 -6.3375 0.0291 18 1 4.5045 -5.8040 0.0261 19 1 2.9081 -7.1629 1.2455 20 1 2.9083 -7.1744 -1.1795 21 1 -0.3634 0.0049 1.0276 22 1 -0.3633 0.8875 -0.5181 23 1 -0.3634 -0.8924 -0.5096 24 1 1.6064 2.0295 0.5096 25 1 3.1477 1.1395 0.5181 26 1 0.7907 3.0398 -1.8030 27 1 1.9245 3.2839 -4.2271 28 1 4.0701 1.7789 -4.2496 29 1 0.7583 -2.5260 0.9012 30 1 0.7589 -2.5340 -0.8788 31 1 0.2884 -6.0725 0.0280 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258746975.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:05 Heat of formation + Delta-G solvation = -16.270715 kcal Electronic energy + Delta-G solvation = -14887.878354 eV Core-core repulsion = 12362.112120 eV Total energy + Delta-G solvation = -2525.766233 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.99750 -40.42727 -36.47695 -35.15574 -32.08615 -31.72097 -30.37736 -27.75339 -26.73091 -24.84629 -21.42037 -21.13995 -20.20850 -18.68687 -18.42818 -17.45019 -17.09202 -16.41387 -16.09647 -14.93333 -14.65933 -14.43378 -14.31335 -14.11925 -13.87423 -13.46485 -13.29516 -13.09792 -13.00202 -12.81681 -12.60479 -12.43410 -12.05984 -11.39676 -10.65081 -10.56334 -9.72800 -9.65951 -8.95122 -8.27508 -6.35104 1.27308 1.37273 1.38053 1.52611 1.83737 2.05668 2.36287 2.53376 2.55616 3.07526 3.95388 4.04721 4.37183 4.41083 4.46748 4.56286 4.67551 4.77391 4.87887 4.96446 5.05203 5.24508 5.37061 5.42095 5.61381 5.74905 6.01238 6.14778 6.30240 6.51762 6.71595 6.78639 7.30982 7.43135 8.84893 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.039085 B = 0.006847 C = 0.006359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.224166 B = 4088.243638 C = 4402.384800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.618 5.618 3 C 0.180 3.820 4 C -0.019 4.019 5 C -0.194 4.194 6 C -0.219 4.219 7 C -0.022 4.022 8 N -0.557 5.557 9 H 0.413 0.587 10 C 0.516 3.484 11 O -0.582 6.582 12 C 0.014 3.986 13 C -0.537 4.537 14 H 0.055 0.945 15 C 0.010 3.990 16 N -0.924 5.924 17 Si 0.964 3.036 18 H -0.275 1.275 19 H -0.271 1.271 20 H -0.273 1.273 21 H 0.070 0.930 22 H 0.097 0.903 23 H 0.059 0.941 24 H 0.131 0.869 25 H 0.069 0.931 26 H 0.153 0.847 27 H 0.153 0.847 28 H 0.184 0.816 29 H 0.040 0.960 30 H 0.036 0.964 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.495 14.664 -3.235 15.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.351 5.351 3 C 0.057 3.943 4 C -0.133 4.133 5 C -0.219 4.219 6 C -0.244 4.244 7 C -0.154 4.154 8 N -0.151 5.151 9 H 0.249 0.751 10 C 0.307 3.693 11 O -0.462 6.462 12 C -0.026 4.026 13 C -0.575 4.575 14 H 0.073 0.927 15 C -0.189 4.189 16 N -0.564 5.564 17 Si 0.789 3.211 18 H -0.200 1.200 19 H -0.196 1.196 20 H -0.198 1.198 21 H 0.088 0.912 22 H 0.116 0.884 23 H 0.078 0.922 24 H 0.149 0.851 25 H 0.087 0.913 26 H 0.171 0.829 27 H 0.170 0.830 28 H 0.201 0.799 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.102 14.436 -3.166 14.779 hybrid contribution 0.738 -1.243 0.017 1.446 sum 0.839 13.193 -3.149 13.590 Atomic orbital electron populations 1.21924 0.77567 1.03900 1.02841 1.48158 1.08289 1.04915 1.73724 1.19947 0.98217 0.85668 0.90451 1.21012 0.92676 1.03493 0.96092 1.20987 1.02153 1.03809 0.94976 1.21193 0.98271 1.05833 0.99066 1.22389 1.02791 1.00990 0.89236 1.42296 1.22636 1.37869 1.12271 0.75056 1.21509 0.87906 0.86529 0.73345 1.90457 1.16039 1.88059 1.51671 1.19038 0.96100 0.89168 0.98256 1.21417 0.93616 0.91341 1.51118 0.92709 1.25802 0.97197 1.01425 0.94477 1.70039 1.13895 1.21301 1.51175 0.85409 0.78842 0.78596 0.78264 1.19966 1.19624 1.19806 0.91162 0.88443 0.92171 0.85091 0.91301 0.82932 0.82970 0.79883 0.94230 0.94657 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.18 10.24 127.77 1.31 3.49 16 2 N -0.62 -21.43 2.86 -851.16 -2.43 -23.86 16 3 C 0.18 5.17 5.94 85.64 0.51 5.67 16 4 C -0.02 -0.54 6.75 41.08 0.28 -0.27 16 5 C -0.19 -5.00 10.76 22.14 0.24 -4.76 16 6 C -0.22 -5.45 10.86 22.14 0.24 -5.21 16 7 C -0.02 -0.56 11.94 83.21 0.99 0.43 16 8 N -0.56 -16.71 6.07 -182.77 -1.11 -17.82 16 9 H 0.41 12.91 8.96 -92.71 -0.83 12.08 16 10 C 0.52 23.93 7.67 87.65 0.67 24.60 16 11 O -0.58 -30.03 15.04 -3.04 -0.05 -30.08 16 12 C 0.01 0.72 4.01 29.10 0.12 0.84 16 13 C -0.54 -31.97 8.92 25.60 0.23 -31.75 16 14 H 0.05 3.42 6.75 -2.91 -0.02 3.40 16 15 C 0.01 0.56 5.46 84.66 0.46 1.02 16 16 N -0.92 -54.48 13.29 21.45 0.28 -54.19 16 17 Si 0.96 45.55 29.54 68.60 2.03 47.57 16 18 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 20 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 21 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 22 H 0.10 2.01 8.07 -2.39 -0.02 1.99 16 23 H 0.06 1.89 6.44 -2.38 -0.02 1.87 16 24 H 0.13 2.69 8.07 -2.39 -0.02 2.67 16 25 H 0.07 2.20 7.42 -2.39 -0.02 2.18 16 26 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 27 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 28 H 0.18 3.52 8.06 -2.91 -0.02 3.50 16 29 H 0.04 2.11 8.11 -2.39 -0.02 2.09 16 30 H 0.04 1.92 7.40 -2.39 -0.02 1.90 16 31 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -70.48 272.52 4.07 -66.41 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.30 Total: 17.90 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 5.05 Total: -5.93 kcal Atomic # 7 Polarization: -92.62 SS G_CDS: -3.26 Total: -95.87 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -0.05 Total: -30.08 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Total: -70.48 4.07 -66.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258746975.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.135 kcal (2) G-P(sol) polarization free energy of solvation -70.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds