Wall clock time and date at job start Mon Mar 30 2020 03:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 110.99992 * 2 1 4 4 C 1.50699 * 109.47024 * 66.04886 * 3 2 1 5 5 O 1.21432 * 119.99817 * 0.02562 * 4 3 2 6 6 C 1.41033 * 120.00002 * 179.97438 * 4 3 2 7 7 H 1.08003 * 119.99815 * 353.74116 * 6 4 3 8 8 C 1.40455 * 119.99905 * 173.74357 * 6 4 3 9 9 N 1.30526 * 120.00171 * 6.25733 * 8 6 4 10 10 Si 1.86799 * 120.00116 * 186.25818 * 8 6 4 11 11 H 1.48504 * 109.47231 * 94.98049 * 10 8 6 12 12 H 1.48497 * 109.47514 * 214.98390 * 10 8 6 13 13 H 1.48500 * 109.47058 * 334.98518 * 10 8 6 14 14 C 1.46900 * 110.99673 * 236.04796 * 2 1 3 15 15 C 1.50694 * 109.47337 * 293.95327 * 14 2 1 16 16 C 1.34846 * 125.89115 * 94.99935 * 15 14 2 17 17 C 1.40891 * 107.41668 * 180.02562 * 16 15 14 18 18 C 1.34841 * 107.42151 * 0.02562 * 17 16 15 19 19 N 1.36345 * 108.21649 * 359.73365 * 18 17 16 20 20 H 0.97000 * 125.64097 * 180.26149 * 19 18 17 21 21 H 1.08997 * 109.47385 * 59.99098 * 1 2 3 22 22 H 1.08998 * 109.47025 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46590 * 299.99727 * 1 2 3 24 24 H 1.09005 * 109.47222 * 186.04819 * 3 2 1 25 25 H 1.08996 * 109.47468 * 306.04664 * 3 2 1 26 26 H 0.97000 * 119.99980 * 180.02562 * 9 8 6 27 27 H 1.09007 * 109.47208 * 53.95752 * 14 2 1 28 28 H 1.09005 * 109.47021 * 173.95458 * 14 2 1 29 29 H 1.08001 * 126.29319 * 0.02562 * 16 15 14 30 30 H 1.08006 * 126.29170 * 179.97438 * 17 16 15 31 31 H 1.08000 * 125.90029 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 8 1.0048 1.4444 2.1421 6 6 2.0367 3.3788 1.5342 7 1 2.6842 3.8809 0.8306 8 6 1.5927 4.0522 2.6841 9 7 0.9121 3.4104 3.5944 10 14 1.9760 5.8663 2.9107 11 1 0.8319 6.6786 2.4242 12 1 2.2060 6.1477 4.3505 13 1 3.1948 6.2151 2.1373 14 6 1.9954 -0.7660 -1.1376 15 6 1.6369 -2.2203 -0.9730 16 6 0.5645 -2.8360 -1.5108 17 6 0.6077 -4.1858 -1.1092 18 6 1.7044 -4.3434 -0.3408 19 7 2.3433 -3.1418 -0.2581 20 1 3.1635 -2.9701 0.2304 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3632 0.5138 0.8900 24 1 3.0798 1.3444 -0.1083 25 1 1.5611 1.9273 -0.8309 26 1 0.6052 3.8755 4.3883 27 1 1.5610 -0.3871 -2.0629 28 1 3.0797 -0.6611 -1.1757 29 1 -0.1890 -2.3785 -2.1348 30 1 -0.1069 -4.9530 -1.3684 31 1 2.0245 -5.2639 0.1247 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259120834.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:03 Heat of formation + Delta-G solvation = 13.534317 kcal Electronic energy + Delta-G solvation = -14761.927104 eV Core-core repulsion = 12237.453314 eV Total energy + Delta-G solvation = -2524.473790 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.81885 -37.52765 -35.31424 -32.55452 -30.64747 -29.91383 -28.03536 -26.23962 -25.38768 -21.90601 -20.26739 -19.86759 -19.17488 -17.21422 -16.16698 -15.19397 -14.97297 -14.63617 -13.90579 -13.50020 -13.38141 -12.95767 -12.82087 -12.47590 -12.07552 -11.96614 -11.83126 -11.32521 -11.18607 -10.95550 -10.66190 -10.30182 -10.26949 -10.07339 -8.86931 -8.58380 -7.86166 -7.67015 -7.15341 -6.17217 -4.85285 2.52110 3.05778 3.14899 3.18290 3.24677 3.62525 4.04358 4.28218 4.79708 5.25692 5.36065 5.45738 5.51847 5.68449 5.84949 5.96062 6.12015 6.21031 6.44404 6.47996 6.55399 6.57118 6.73297 7.00609 7.25503 7.28590 7.39917 7.72492 7.83902 7.88364 8.10908 8.87172 8.94634 10.39722 10.64304 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.069678 B = 0.005609 C = 0.005526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.753530 B = 4990.421719 C = 5065.472592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.519 5.519 3 C 0.014 3.986 4 C 0.369 3.631 5 O -0.524 6.524 6 C -0.541 4.541 7 H 0.067 0.933 8 C 0.085 3.915 9 N -0.742 5.742 10 Si 0.904 3.096 11 H -0.271 1.271 12 H -0.277 1.277 13 H -0.263 1.263 14 C 0.113 3.887 15 C 0.044 3.956 16 C -0.203 4.203 17 C -0.204 4.204 18 C -0.022 4.022 19 N -0.547 5.547 20 H 0.413 0.587 21 H 0.007 0.993 22 H 0.059 0.941 23 H 0.095 0.905 24 H 0.072 0.928 25 H 0.034 0.966 26 H 0.272 0.728 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.241 -7.968 -7.880 11.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.243 5.243 3 C -0.114 4.114 4 C 0.261 3.739 5 O -0.411 6.411 6 C -0.573 4.573 7 H 0.085 0.915 8 C -0.138 4.138 9 N -0.371 5.371 10 Si 0.728 3.272 11 H -0.196 1.196 12 H -0.203 1.203 13 H -0.187 1.187 14 C -0.016 4.016 15 C -0.070 4.070 16 C -0.228 4.228 17 C -0.229 4.229 18 C -0.154 4.154 19 N -0.141 5.141 20 H 0.250 0.750 21 H 0.026 0.974 22 H 0.078 0.922 23 H 0.113 0.887 24 H 0.090 0.910 25 H 0.052 0.948 26 H 0.083 0.917 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.147 0.853 30 H 0.148 0.852 31 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.133 -8.505 -6.814 11.105 hybrid contribution 0.355 1.378 -0.583 1.538 sum 2.488 -7.127 -7.397 10.569 Atomic orbital electron populations 1.22512 0.86944 1.01310 1.01437 1.61834 1.08836 1.14192 1.39403 1.22727 0.99299 0.87371 1.02014 1.19396 0.81643 0.87622 0.85230 1.90368 1.39169 1.65909 1.45622 1.20740 1.30278 0.99552 1.06749 0.91450 1.25959 0.93276 0.99684 0.94869 1.69962 1.24580 1.36578 1.05957 0.86415 0.79696 0.82902 0.78179 1.19592 1.20263 1.18651 1.20627 0.99872 0.87563 0.93532 1.20259 0.95553 0.91482 0.99705 1.20634 0.99867 0.94592 1.07709 1.20802 1.00029 0.97011 1.05050 1.21726 0.97353 0.89557 1.06748 1.41937 1.22907 1.08363 1.40863 0.75039 0.97427 0.92216 0.88685 0.91005 0.94760 0.91711 0.93403 0.90882 0.85339 0.85234 0.82390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 9.01 60.07 0.54 1.08 16 2 N -0.52 -10.82 4.49 -245.83 -1.10 -11.92 16 3 C 0.01 0.32 5.32 -4.98 -0.03 0.29 16 4 C 0.37 10.26 6.62 -33.25 -0.22 10.04 16 5 O -0.52 -16.37 12.86 5.43 0.07 -16.30 16 6 C -0.54 -14.97 9.22 -37.69 -0.35 -15.32 16 7 H 0.07 1.72 7.86 -52.48 -0.41 1.31 16 8 C 0.08 2.30 5.50 -17.27 -0.09 2.21 16 9 N -0.74 -21.54 11.75 55.57 0.65 -20.89 16 10 Si 0.90 19.50 29.57 -169.99 -5.03 14.47 16 11 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 12 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 13 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 14 C 0.11 1.87 5.50 -4.98 -0.03 1.84 16 15 C 0.04 0.71 5.92 -81.79 -0.48 0.22 16 16 C -0.20 -3.14 9.62 -39.78 -0.38 -3.53 16 17 C -0.20 -2.87 10.86 -39.78 -0.43 -3.30 16 18 C -0.02 -0.29 11.94 -16.75 -0.20 -0.49 16 19 N -0.55 -7.74 6.08 -9.12 -0.06 -7.79 16 20 H 0.41 5.04 8.96 -40.82 -0.37 4.67 16 21 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 22 H 0.06 1.17 6.32 -51.93 -0.33 0.85 16 23 H 0.09 2.36 5.88 -51.93 -0.31 2.05 16 24 H 0.07 1.47 7.93 -51.93 -0.41 1.06 16 25 H 0.03 0.73 8.12 -51.93 -0.42 0.30 16 26 H 0.27 7.11 8.29 -40.82 -0.34 6.77 16 27 H 0.05 0.75 8.12 -51.93 -0.42 0.32 16 28 H 0.07 1.10 7.93 -51.93 -0.41 0.69 16 29 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 30 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 31 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 267.30 15.07 4.03 4.03 Total: -1.00 -32.78 267.30 -7.01 -39.80 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -3.90 Total: 5.55 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -1.67 Total: -6.95 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: -0.51 Total: -40.60 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: 0.07 Total: -16.30 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.78 -7.01 -39.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259120834.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.331 kcal (2) G-P(sol) polarization free energy of solvation -32.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds