Wall clock time and date at job start Mon Mar 30 2020 03:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 110.99992 * 2 1 4 4 C 1.50699 * 109.47024 * 66.04886 * 3 2 1 5 5 O 1.21432 * 119.99817 * 0.02562 * 4 3 2 6 6 C 1.41033 * 120.00002 * 179.97438 * 4 3 2 7 7 H 1.08003 * 119.99815 * 353.74116 * 6 4 3 8 8 C 1.40455 * 119.99905 * 173.74357 * 6 4 3 9 9 N 1.30526 * 120.00171 * 6.25733 * 8 6 4 10 10 Si 1.86799 * 120.00116 * 186.25818 * 8 6 4 11 11 H 1.48504 * 109.47231 * 94.98049 * 10 8 6 12 12 H 1.48497 * 109.47514 * 214.98390 * 10 8 6 13 13 H 1.48500 * 109.47058 * 334.98518 * 10 8 6 14 14 C 1.46900 * 110.99673 * 236.04796 * 2 1 3 15 15 C 1.50694 * 109.47337 * 293.95327 * 14 2 1 16 16 C 1.34846 * 125.89115 * 94.99935 * 15 14 2 17 17 C 1.40891 * 107.41668 * 180.02562 * 16 15 14 18 18 C 1.34841 * 107.42151 * 0.02562 * 17 16 15 19 19 N 1.36345 * 108.21649 * 359.73365 * 18 17 16 20 20 H 0.97000 * 125.64097 * 180.26149 * 19 18 17 21 21 H 1.08997 * 109.47385 * 59.99098 * 1 2 3 22 22 H 1.08998 * 109.47025 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46590 * 299.99727 * 1 2 3 24 24 H 1.09005 * 109.47222 * 186.04819 * 3 2 1 25 25 H 1.08996 * 109.47468 * 306.04664 * 3 2 1 26 26 H 0.97000 * 119.99980 * 180.02562 * 9 8 6 27 27 H 1.09007 * 109.47208 * 53.95752 * 14 2 1 28 28 H 1.09005 * 109.47021 * 173.95458 * 14 2 1 29 29 H 1.08001 * 126.29319 * 0.02562 * 16 15 14 30 30 H 1.08006 * 126.29170 * 179.97438 * 17 16 15 31 31 H 1.08000 * 125.90029 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 8 1.0048 1.4444 2.1421 6 6 2.0367 3.3788 1.5342 7 1 2.6842 3.8809 0.8306 8 6 1.5927 4.0522 2.6841 9 7 0.9121 3.4104 3.5944 10 14 1.9760 5.8663 2.9107 11 1 0.8319 6.6786 2.4242 12 1 2.2060 6.1477 4.3505 13 1 3.1948 6.2151 2.1373 14 6 1.9954 -0.7660 -1.1376 15 6 1.6369 -2.2203 -0.9730 16 6 0.5645 -2.8360 -1.5108 17 6 0.6077 -4.1858 -1.1092 18 6 1.7044 -4.3434 -0.3408 19 7 2.3433 -3.1418 -0.2581 20 1 3.1635 -2.9701 0.2304 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3632 0.5138 0.8900 24 1 3.0798 1.3444 -0.1083 25 1 1.5611 1.9273 -0.8309 26 1 0.6052 3.8755 4.3883 27 1 1.5610 -0.3871 -2.0629 28 1 3.0797 -0.6611 -1.1757 29 1 -0.1890 -2.3785 -2.1348 30 1 -0.1069 -4.9530 -1.3684 31 1 2.0245 -5.2639 0.1247 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259120834.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:03 Heat of formation + Delta-G solvation = -9.695122 kcal Electronic energy + Delta-G solvation = -14762.934408 eV Core-core repulsion = 12237.453314 eV Total energy + Delta-G solvation = -2525.481094 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.92503 -39.40913 -37.12028 -34.65539 -31.74512 -31.31794 -29.91670 -27.96179 -26.92918 -23.52594 -21.36222 -21.10929 -21.00293 -18.59849 -18.05334 -17.07119 -16.53052 -16.18868 -15.56765 -14.95198 -14.72255 -14.45494 -14.23040 -14.15131 -13.71826 -13.31706 -13.20174 -13.05949 -12.88679 -12.48688 -12.29321 -12.16755 -12.03913 -11.98500 -10.92355 -9.68973 -9.53718 -9.13539 -8.84340 -8.21021 -7.03233 1.36232 1.37648 1.40024 1.55425 2.13178 2.22487 2.25415 2.58392 3.26874 3.41519 4.03391 4.21092 4.35163 4.48022 4.53299 4.55996 4.66779 4.75847 4.78219 4.90378 4.90791 5.21519 5.24814 5.39904 5.44443 6.00473 6.06877 6.13224 6.29057 6.32798 6.77291 6.84154 6.90471 8.35453 8.58096 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.069678 B = 0.005609 C = 0.005526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.753530 B = 4990.421719 C = 5065.472592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.537 5.537 3 C 0.027 3.973 4 C 0.344 3.656 5 O -0.570 6.570 6 C -0.570 4.570 7 H 0.085 0.915 8 C 0.029 3.971 9 N -0.793 5.793 10 Si 0.991 3.009 11 H -0.262 1.262 12 H -0.270 1.270 13 H -0.248 1.248 14 C 0.118 3.882 15 C 0.017 3.983 16 C -0.214 4.214 17 C -0.224 4.224 18 C -0.013 4.013 19 N -0.548 5.548 20 H 0.421 0.579 21 H 0.021 0.979 22 H 0.068 0.932 23 H 0.049 0.951 24 H 0.091 0.909 25 H 0.046 0.954 26 H 0.279 0.721 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.132 0.868 30 H 0.148 0.852 31 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.281 -7.746 -8.834 12.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.261 5.261 3 C -0.101 4.101 4 C 0.240 3.760 5 O -0.461 6.461 6 C -0.602 4.602 7 H 0.103 0.897 8 C -0.189 4.189 9 N -0.422 5.422 10 Si 0.811 3.189 11 H -0.187 1.187 12 H -0.195 1.195 13 H -0.171 1.171 14 C -0.009 4.009 15 C -0.097 4.097 16 C -0.239 4.239 17 C -0.248 4.248 18 C -0.145 4.145 19 N -0.143 5.143 20 H 0.258 0.742 21 H 0.039 0.961 22 H 0.087 0.913 23 H 0.068 0.932 24 H 0.109 0.891 25 H 0.064 0.936 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.106 0.894 29 H 0.149 0.851 30 H 0.166 0.834 31 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 3.194 -8.290 -7.798 11.821 hybrid contribution 0.023 1.204 -0.297 1.241 sum 3.217 -7.085 -8.095 11.228 Atomic orbital electron populations 1.22254 0.87561 1.01306 0.99785 1.61719 1.08514 1.13630 1.42268 1.22410 1.00440 0.88160 0.99136 1.20173 0.80786 0.88224 0.86816 1.90340 1.41003 1.66984 1.47745 1.21299 1.30879 1.00276 1.07749 0.89709 1.27170 0.92304 1.05500 0.93963 1.70101 1.25806 1.39423 1.06896 0.85098 0.80070 0.75239 0.78529 1.18651 1.19484 1.17085 1.20615 1.00607 0.87464 0.92234 1.20216 0.96615 0.91457 1.01379 1.20885 0.99780 0.95558 1.07702 1.21143 1.01107 0.96939 1.05638 1.22349 0.96490 0.90172 1.05442 1.42044 1.23182 1.08501 1.40593 0.74173 0.96055 0.91300 0.93175 0.89093 0.93559 0.91045 0.92229 0.89373 0.85054 0.83403 0.78945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.66 9.01 127.69 1.15 2.81 16 2 N -0.54 -22.20 4.49 -931.66 -4.18 -26.39 16 3 C 0.03 1.19 5.32 85.56 0.46 1.65 16 4 C 0.34 19.55 6.62 26.37 0.17 19.72 16 5 O -0.57 -37.04 12.86 -3.50 -0.05 -37.08 16 6 C -0.57 -31.73 9.22 23.50 0.22 -31.51 16 7 H 0.08 4.25 7.86 -2.91 -0.02 4.23 16 8 C 0.03 1.59 5.50 85.43 0.47 2.06 16 9 N -0.79 -47.17 11.75 21.91 0.26 -46.91 16 10 Si 0.99 39.61 29.57 68.60 2.03 41.63 16 11 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 12 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 13 H -0.25 -9.22 7.11 99.48 0.71 -8.51 16 14 C 0.12 3.75 5.50 85.56 0.47 4.22 16 15 C 0.02 0.53 5.92 41.08 0.24 0.77 16 16 C -0.21 -6.34 9.62 22.14 0.21 -6.13 16 17 C -0.22 -5.85 10.86 22.14 0.24 -5.61 16 18 C -0.01 -0.30 11.94 83.21 0.99 0.69 16 19 N -0.55 -14.55 6.08 -182.78 -1.11 -15.66 16 20 H 0.42 9.57 8.96 -92.71 -0.83 8.74 16 21 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 22 H 0.07 2.73 6.32 -2.39 -0.02 2.72 16 23 H 0.05 2.59 5.88 -2.39 -0.01 2.57 16 24 H 0.09 3.61 7.93 -2.38 -0.02 3.59 16 25 H 0.05 1.91 8.12 -2.39 -0.02 1.89 16 26 H 0.28 14.92 8.29 -92.71 -0.77 14.15 16 27 H 0.06 1.75 8.12 -2.38 -0.02 1.73 16 28 H 0.09 2.48 7.93 -2.38 -0.02 2.46 16 29 H 0.13 3.68 8.06 -2.91 -0.02 3.65 16 30 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 31 H 0.19 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -72.38 267.30 1.88 -70.50 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.30 Total: 25.23 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: 4.63 Total: -11.33 kcal Atomic # 7 Polarization: -83.92 SS G_CDS: -5.04 Total: -88.96 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -0.05 Total: -37.08 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.63 kcal Total: -72.38 1.88 -70.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259120834.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.806 kcal (2) G-P(sol) polarization free energy of solvation -72.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds