Wall clock time and date at job start Mon Mar 30 2020 03:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99975 * 2 1 4 4 C 1.50701 * 109.46921 * 66.04817 * 3 2 1 5 5 O 1.21439 * 120.00078 * 0.02562 * 4 3 2 6 6 C 1.41025 * 119.99767 * 179.97438 * 4 3 2 7 7 H 1.07993 * 120.00135 * 0.02562 * 6 4 3 8 8 C 1.40460 * 119.99555 * 180.02562 * 6 4 3 9 9 N 1.30521 * 120.00371 * 0.02562 * 8 6 4 10 10 Si 1.86808 * 119.99721 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46777 * 90.00166 * 10 8 6 12 12 H 1.48503 * 109.47030 * 209.99951 * 10 8 6 13 13 H 1.48492 * 109.47275 * 330.00500 * 10 8 6 14 14 C 1.46903 * 110.99788 * 236.05051 * 2 1 3 15 15 C 1.50702 * 109.46939 * 293.95226 * 14 2 1 16 16 C 1.40890 * 126.29270 * 269.68925 * 15 14 2 17 17 C 1.34842 * 107.41834 * 179.83174 * 16 15 14 18 18 N 1.36343 * 108.21843 * 0.43222 * 17 16 15 19 19 H 0.97001 * 125.63785 * 179.75825 * 18 17 16 20 20 C 1.34848 * 126.28787 * 90.00345 * 15 14 2 21 21 H 1.09001 * 109.47121 * 59.99638 * 1 2 3 22 22 H 1.09005 * 109.47342 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46894 * 299.99652 * 1 2 3 24 24 H 1.09002 * 109.47401 * 306.04845 * 3 2 1 25 25 H 1.09001 * 109.46874 * 186.04858 * 3 2 1 26 26 H 0.97001 * 119.99674 * 179.97438 * 9 8 6 27 27 H 1.09003 * 109.47188 * 53.95311 * 14 2 1 28 28 H 1.08993 * 109.47221 * 173.95234 * 14 2 1 29 29 H 1.08001 * 126.28563 * 359.96606 * 16 15 14 30 30 H 1.08002 * 125.89315 * 180.15992 * 17 16 15 31 31 H 1.08001 * 125.89533 * 359.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 8 1.0047 1.4445 2.1422 6 6 2.0366 3.3788 1.5342 7 1 2.5992 3.9146 0.7841 8 6 1.7029 4.0083 2.7447 9 7 1.0234 3.3606 3.6515 10 14 2.2317 5.7726 3.0567 11 1 1.1770 6.6986 2.5716 12 1 2.4385 5.9772 4.5130 13 1 3.4998 6.0445 2.3336 14 6 1.9954 -0.7659 -1.1377 15 6 1.6369 -2.2204 -0.9730 16 6 2.4102 -3.2013 -0.3212 17 6 1.7316 -4.3643 -0.3939 18 7 0.5722 -4.1394 -1.0751 19 1 -0.1039 -4.8056 -1.2754 20 6 0.5197 -2.8234 -1.4275 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.5611 1.9274 -0.8309 25 1 3.0797 1.3444 -0.1083 26 1 0.7933 3.7953 4.4876 27 1 1.5610 -0.3871 -2.0629 28 1 3.0796 -0.6610 -1.1758 29 1 3.3691 -3.0491 0.1517 30 1 2.0533 -5.3115 0.0131 31 1 -0.2792 -2.3461 -1.9758 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259130553.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:07 Heat of formation + Delta-G solvation = 17.208549 kcal Electronic energy + Delta-G solvation = -14730.950631 eV Core-core repulsion = 12206.636168 eV Total energy + Delta-G solvation = -2524.314463 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.79485 -37.42231 -35.26417 -32.48960 -31.07368 -29.00087 -27.90967 -26.35555 -25.46193 -21.83458 -20.52621 -19.05688 -19.01518 -17.74657 -16.11628 -15.12490 -14.80500 -14.41702 -13.82121 -13.57073 -13.43398 -13.12647 -12.69750 -12.44449 -11.96617 -11.93161 -11.49730 -11.17496 -11.10622 -10.75224 -10.59003 -10.24256 -10.11386 -10.03263 -8.79388 -8.43839 -7.88690 -7.50222 -7.03347 -6.07147 -4.77277 2.50739 3.11160 3.19399 3.22922 3.26620 3.55361 4.10825 4.36980 5.04455 5.30590 5.38496 5.55953 5.64636 5.67688 5.99758 6.17152 6.25361 6.28217 6.42179 6.56585 6.68016 6.70844 6.88891 7.07372 7.24484 7.35754 7.38828 7.79274 7.95256 8.05962 8.18784 8.95007 9.04618 10.48393 10.74482 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.068678 B = 0.005567 C = 0.005493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.601023 B = 5028.496098 C = 5096.608604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.515 5.515 3 C 0.015 3.985 4 C 0.369 3.631 5 O -0.523 6.523 6 C -0.541 4.541 7 H 0.066 0.934 8 C 0.085 3.915 9 N -0.743 5.743 10 Si 0.903 3.097 11 H -0.271 1.271 12 H -0.278 1.278 13 H -0.263 1.263 14 C 0.121 3.879 15 C -0.142 4.142 16 C -0.177 4.177 17 C -0.028 4.028 18 N -0.565 5.565 19 H 0.410 0.590 20 C -0.018 4.018 21 H 0.002 0.998 22 H 0.054 0.946 23 H 0.093 0.907 24 H 0.030 0.970 25 H 0.072 0.928 26 H 0.271 0.729 27 H 0.025 0.975 28 H 0.072 0.928 29 H 0.133 0.867 30 H 0.159 0.841 31 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.065 -9.688 -9.014 13.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.238 5.238 3 C -0.113 4.113 4 C 0.262 3.738 5 O -0.410 6.410 6 C -0.573 4.573 7 H 0.085 0.915 8 C -0.138 4.138 9 N -0.372 5.372 10 Si 0.727 3.273 11 H -0.196 1.196 12 H -0.203 1.203 13 H -0.187 1.187 14 C -0.008 4.008 15 C -0.149 4.149 16 C -0.203 4.203 17 C -0.158 4.158 18 N -0.160 5.160 19 H 0.245 0.755 20 C -0.149 4.149 21 H 0.021 0.979 22 H 0.072 0.928 23 H 0.111 0.889 24 H 0.048 0.952 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.043 0.957 28 H 0.090 0.910 29 H 0.151 0.849 30 H 0.176 0.824 31 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -0.396 -10.357 -8.051 13.125 hybrid contribution -0.199 1.047 -0.829 1.350 sum -0.595 -9.311 -8.880 12.880 Atomic orbital electron populations 1.22471 0.87750 1.00654 1.01074 1.61754 1.08046 1.13715 1.40326 1.22694 0.99420 0.87681 1.01546 1.19413 0.81419 0.87676 0.85340 1.90361 1.38665 1.66375 1.45621 1.20752 1.34913 0.99658 1.01991 0.91534 1.25959 0.93167 0.99125 0.95504 1.69961 1.25996 1.36284 1.04978 0.86446 0.79918 0.82841 0.78063 1.19622 1.20318 1.18682 1.20456 0.99548 0.88987 0.91765 1.19418 0.95982 0.95320 1.04190 1.20822 1.01556 0.92185 1.05697 1.21743 0.89008 1.00186 1.04851 1.41875 1.18783 1.09544 1.45808 0.75503 1.21615 1.01348 0.83831 1.08151 0.97943 0.92764 0.88900 0.95196 0.90935 0.91803 0.95737 0.90956 0.84889 0.82392 0.82600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 8.98 60.07 0.54 1.15 16 2 N -0.51 -11.36 4.49 -245.82 -1.10 -12.46 16 3 C 0.02 0.35 5.32 -4.97 -0.03 0.33 16 4 C 0.37 10.60 6.63 -33.25 -0.22 10.38 16 5 O -0.52 -16.77 12.83 5.42 0.07 -16.70 16 6 C -0.54 -15.35 9.22 -37.69 -0.35 -15.70 16 7 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 8 C 0.08 2.35 5.50 -17.27 -0.10 2.26 16 9 N -0.74 -21.98 11.72 55.57 0.65 -21.33 16 10 Si 0.90 19.88 29.56 -169.99 -5.03 14.86 16 11 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 12 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 13 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 14 C 0.12 2.16 5.46 -4.97 -0.03 2.14 16 15 C -0.14 -2.35 5.03 -104.82 -0.53 -2.88 16 16 C -0.18 -2.78 10.81 -39.78 -0.43 -3.21 16 17 C -0.03 -0.35 11.94 -16.75 -0.20 -0.55 16 18 N -0.56 -6.56 6.07 -12.85 -0.08 -6.64 16 19 H 0.41 3.22 8.96 -40.82 -0.37 2.86 16 20 C -0.02 -0.26 10.38 -16.75 -0.17 -0.43 16 21 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 22 H 0.05 1.05 6.10 -51.93 -0.32 0.73 16 23 H 0.09 2.34 5.88 -51.93 -0.31 2.04 16 24 H 0.03 0.66 8.12 -51.93 -0.42 0.24 16 25 H 0.07 1.59 7.93 -51.93 -0.41 1.18 16 26 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 27 H 0.02 0.41 8.12 -51.93 -0.42 -0.01 16 28 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 29 H 0.13 2.02 8.06 -52.49 -0.42 1.60 16 30 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.16 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 266.79 15.07 4.02 4.02 Total: -1.00 -34.30 266.79 -6.87 -41.17 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -3.89 Total: 3.61 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -1.51 Total: -6.51 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: -0.53 Total: -40.44 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.07 Total: -16.70 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.03 Total: 14.86 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -34.30 -6.87 -41.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259130553.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.376 kcal (2) G-P(sol) polarization free energy of solvation -34.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds