Wall clock time and date at job start Mon Mar 30 2020 03:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99975 * 2 1 4 4 C 1.50701 * 109.46921 * 66.04817 * 3 2 1 5 5 O 1.21439 * 120.00078 * 0.02562 * 4 3 2 6 6 C 1.41025 * 119.99767 * 179.97438 * 4 3 2 7 7 H 1.07993 * 120.00135 * 0.02562 * 6 4 3 8 8 C 1.40460 * 119.99555 * 180.02562 * 6 4 3 9 9 N 1.30521 * 120.00371 * 0.02562 * 8 6 4 10 10 Si 1.86808 * 119.99721 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46777 * 90.00166 * 10 8 6 12 12 H 1.48503 * 109.47030 * 209.99951 * 10 8 6 13 13 H 1.48492 * 109.47275 * 330.00500 * 10 8 6 14 14 C 1.46903 * 110.99788 * 236.05051 * 2 1 3 15 15 C 1.50702 * 109.46939 * 293.95226 * 14 2 1 16 16 C 1.40890 * 126.29270 * 269.68925 * 15 14 2 17 17 C 1.34842 * 107.41834 * 179.83174 * 16 15 14 18 18 N 1.36343 * 108.21843 * 0.43222 * 17 16 15 19 19 H 0.97001 * 125.63785 * 179.75825 * 18 17 16 20 20 C 1.34848 * 126.28787 * 90.00345 * 15 14 2 21 21 H 1.09001 * 109.47121 * 59.99638 * 1 2 3 22 22 H 1.09005 * 109.47342 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46894 * 299.99652 * 1 2 3 24 24 H 1.09002 * 109.47401 * 306.04845 * 3 2 1 25 25 H 1.09001 * 109.46874 * 186.04858 * 3 2 1 26 26 H 0.97001 * 119.99674 * 179.97438 * 9 8 6 27 27 H 1.09003 * 109.47188 * 53.95311 * 14 2 1 28 28 H 1.08993 * 109.47221 * 173.95234 * 14 2 1 29 29 H 1.08001 * 126.28563 * 359.96606 * 16 15 14 30 30 H 1.08002 * 125.89315 * 180.15992 * 17 16 15 31 31 H 1.08001 * 125.89533 * 359.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 8 1.0047 1.4445 2.1422 6 6 2.0366 3.3788 1.5342 7 1 2.5992 3.9146 0.7841 8 6 1.7029 4.0083 2.7447 9 7 1.0234 3.3606 3.6515 10 14 2.2317 5.7726 3.0567 11 1 1.1770 6.6986 2.5716 12 1 2.4385 5.9772 4.5130 13 1 3.4998 6.0445 2.3336 14 6 1.9954 -0.7659 -1.1377 15 6 1.6369 -2.2204 -0.9730 16 6 2.4102 -3.2013 -0.3212 17 6 1.7316 -4.3643 -0.3939 18 7 0.5722 -4.1394 -1.0751 19 1 -0.1039 -4.8056 -1.2754 20 6 0.5197 -2.8234 -1.4275 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.5611 1.9274 -0.8309 25 1 3.0797 1.3444 -0.1083 26 1 0.7933 3.7953 4.4876 27 1 1.5610 -0.3871 -2.0629 28 1 3.0796 -0.6610 -1.1758 29 1 3.3691 -3.0491 0.1517 30 1 2.0533 -5.3115 0.0131 31 1 -0.2792 -2.3461 -1.9758 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259130553.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:07 Heat of formation + Delta-G solvation = -7.638551 kcal Electronic energy + Delta-G solvation = -14732.028082 eV Core-core repulsion = 12206.636168 eV Total energy + Delta-G solvation = -2525.391915 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.86019 -39.37056 -37.12034 -34.63542 -32.34373 -30.39199 -29.67098 -28.00657 -27.18833 -23.53048 -21.57875 -21.06994 -20.15407 -18.87073 -18.22956 -17.09128 -16.40711 -16.07447 -15.54827 -14.90576 -14.70397 -14.43416 -14.34311 -14.07310 -13.79278 -13.36261 -13.17813 -12.85881 -12.74547 -12.29371 -12.23926 -12.14696 -12.03267 -11.96414 -10.89730 -9.56115 -9.47100 -9.03795 -8.82555 -8.16777 -7.01535 1.38162 1.39810 1.45760 1.56509 2.06758 2.25125 2.27335 2.63971 3.40400 3.49534 4.19103 4.33359 4.41702 4.48420 4.54647 4.57512 4.71759 4.80630 4.82636 4.96663 5.02141 5.23453 5.26709 5.32682 5.57018 6.02660 6.09904 6.19408 6.31964 6.46009 6.79200 6.93181 6.94010 8.38612 8.61216 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.068678 B = 0.005567 C = 0.005493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.601023 B = 5028.496098 C = 5096.608604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.538 5.538 3 C 0.027 3.973 4 C 0.344 3.656 5 O -0.569 6.569 6 C -0.571 4.571 7 H 0.084 0.916 8 C 0.028 3.972 9 N -0.793 5.793 10 Si 0.993 3.007 11 H -0.259 1.259 12 H -0.270 1.270 13 H -0.249 1.249 14 C 0.126 3.874 15 C -0.179 4.179 16 C -0.219 4.219 17 C -0.011 4.011 18 N -0.549 5.549 19 H 0.430 0.570 20 C -0.014 4.014 21 H 0.019 0.981 22 H 0.072 0.928 23 H 0.047 0.953 24 H 0.043 0.957 25 H 0.084 0.916 26 H 0.279 0.721 27 H 0.039 0.961 28 H 0.072 0.928 29 H 0.124 0.876 30 H 0.194 0.806 31 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.105 -9.746 -10.164 14.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.262 5.262 3 C -0.102 4.102 4 C 0.240 3.760 5 O -0.460 6.460 6 C -0.602 4.602 7 H 0.102 0.898 8 C -0.190 4.190 9 N -0.423 5.423 10 Si 0.812 3.188 11 H -0.184 1.184 12 H -0.194 1.194 13 H -0.172 1.172 14 C -0.001 4.001 15 C -0.186 4.186 16 C -0.244 4.244 17 C -0.142 4.142 18 N -0.146 5.146 19 H 0.269 0.731 20 C -0.147 4.147 21 H 0.037 0.963 22 H 0.090 0.910 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.102 0.898 26 H 0.089 0.911 27 H 0.057 0.943 28 H 0.090 0.910 29 H 0.142 0.858 30 H 0.211 0.789 31 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -0.233 -10.446 -9.240 13.949 hybrid contribution -0.265 0.964 -0.486 1.112 sum -0.498 -9.483 -9.726 13.593 Atomic orbital electron populations 1.22244 0.87721 1.01252 0.99509 1.61674 1.08351 1.13039 1.43157 1.22389 1.00161 0.88654 0.98956 1.20181 0.80638 0.88365 0.86818 1.90329 1.40555 1.67442 1.47648 1.21302 1.35404 1.00307 1.03217 0.89829 1.27187 0.92415 1.04750 0.94653 1.70104 1.27164 1.39141 1.05853 0.85096 0.80006 0.75392 0.78331 1.18369 1.19445 1.17245 1.20416 0.99419 0.89602 0.90668 1.19461 0.97808 0.94756 1.06571 1.20995 1.02233 0.93629 1.07496 1.22194 0.88371 1.00533 1.03137 1.41903 1.18863 1.09309 1.44479 0.73058 1.21845 1.00818 0.84636 1.07371 0.96302 0.90986 0.93460 0.93915 0.89761 0.91057 0.94300 0.90999 0.85759 0.78933 0.80664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.76 8.98 127.69 1.15 2.91 16 2 N -0.54 -23.92 4.49 -931.63 -4.18 -28.10 16 3 C 0.03 1.28 5.32 85.56 0.46 1.74 16 4 C 0.34 20.35 6.63 26.37 0.17 20.52 16 5 O -0.57 -38.11 12.83 -3.52 -0.05 -38.16 16 6 C -0.57 -32.78 9.22 23.50 0.22 -32.57 16 7 H 0.08 4.35 7.85 -2.91 -0.02 4.32 16 8 C 0.03 1.58 5.50 85.43 0.47 2.05 16 9 N -0.79 -48.12 11.72 21.91 0.26 -47.87 16 10 Si 0.99 40.53 29.56 68.60 2.03 42.55 16 11 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 12 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 13 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 14 C 0.13 4.45 5.46 85.56 0.47 4.92 16 15 C -0.18 -5.75 5.03 -19.99 -0.10 -5.85 16 16 C -0.22 -6.69 10.81 22.14 0.24 -6.45 16 17 C -0.01 -0.25 11.94 83.21 0.99 0.74 16 18 N -0.55 -11.11 6.07 -194.56 -1.18 -12.29 16 19 H 0.43 5.20 8.96 -92.71 -0.83 4.37 16 20 C -0.01 -0.36 10.38 83.21 0.86 0.50 16 21 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 22 H 0.07 2.76 6.10 -2.38 -0.01 2.75 16 23 H 0.05 2.47 5.88 -2.39 -0.01 2.46 16 24 H 0.04 1.88 8.12 -2.39 -0.02 1.86 16 25 H 0.08 3.71 7.93 -2.39 -0.02 3.69 16 26 H 0.28 15.19 8.29 -92.71 -0.77 14.42 16 27 H 0.04 1.24 8.12 -2.39 -0.02 1.22 16 28 H 0.07 2.47 7.93 -2.39 -0.02 2.45 16 29 H 0.12 3.86 8.06 -2.91 -0.02 3.83 16 30 H 0.19 2.94 8.06 -2.91 -0.02 2.92 16 31 H 0.18 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -76.78 266.79 2.10 -74.68 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 0.30 Total: 20.68 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: 4.93 Total: -11.50 kcal Atomic # 7 Polarization: -83.15 SS G_CDS: -5.11 Total: -88.26 kcal Atomic # 8 Polarization: -38.11 SS G_CDS: -0.05 Total: -38.16 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.55 kcal Total: -76.78 2.10 -74.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259130553.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.041 kcal (2) G-P(sol) polarization free energy of solvation -76.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds