Wall clock time and date at job start Mon Mar 30 2020 02:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47068 * 2 1 4 4 C 1.50704 * 109.47538 * 239.99848 * 2 1 3 5 5 H 1.07996 * 119.99747 * 240.00390 * 4 2 1 6 6 C 1.37876 * 119.99838 * 60.00051 * 4 2 1 7 7 N 1.31518 * 119.99770 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99877 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47361 * 89.99965 * 8 6 4 10 10 H 1.48502 * 109.47048 * 209.99764 * 8 6 4 11 11 H 1.48495 * 109.47118 * 329.99528 * 8 6 4 12 12 C 1.53008 * 109.47097 * 119.99978 * 2 1 3 13 13 C 1.53004 * 109.46980 * 295.00308 * 12 2 1 14 14 C 1.50693 * 109.47123 * 179.97438 * 13 12 2 15 15 C 1.38250 * 119.97504 * 90.00147 * 14 13 12 16 16 C 1.38196 * 120.02428 * 180.23537 * 15 14 13 17 17 C 1.38457 * 119.97339 * 359.50816 * 16 15 14 18 18 F 1.35103 * 120.02362 * 180.21068 * 17 16 15 19 19 C 1.38456 * 119.94977 * 0.48564 * 17 16 15 20 20 C 1.38199 * 119.97506 * 359.75344 * 19 17 16 21 21 H 1.09000 * 109.47426 * 300.00090 * 1 2 3 22 22 H 1.09000 * 109.46949 * 60.00660 * 1 2 3 23 23 H 1.09004 * 109.47068 * 179.97438 * 1 2 3 24 24 H 0.97000 * 119.99589 * 180.02562 * 7 6 4 25 25 H 1.08992 * 109.47233 * 175.00227 * 12 2 1 26 26 H 1.08999 * 109.46739 * 55.00114 * 12 2 1 27 27 H 1.08999 * 109.46918 * 59.99639 * 13 12 2 28 28 H 1.09006 * 109.46837 * 300.00023 * 13 12 2 29 29 H 1.08002 * 119.98396 * 359.94944 * 15 14 13 30 30 H 1.08004 * 120.00978 * 179.72210 * 16 15 14 31 31 H 1.07999 * 120.01335 * 179.72141 * 19 17 16 32 32 H 1.07999 * 119.98943 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1204 -4.0078 9 1 1.3430 -2.1618 -4.4118 10 1 2.4868 -0.1414 -5.1122 11 1 3.6295 -1.7582 -3.7121 12 6 2.0400 -0.7213 1.2493 13 6 1.6351 0.0689 2.4954 14 6 2.1369 -0.6418 3.7258 15 6 3.3903 -0.3486 4.2300 16 6 3.8535 -1.0032 5.3555 17 6 3.0575 -1.9456 5.9842 18 9 3.5075 -2.5831 7.0871 19 6 1.8022 -2.2383 5.4785 20 6 1.3432 -1.5860 4.3500 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7090 1.1613 -3.4844 25 1 3.1262 -0.7995 1.2057 26 1 1.6053 -1.7198 1.2952 27 1 0.5488 0.1471 2.5389 28 1 2.0697 1.0675 2.4494 29 1 4.0097 0.3890 3.7412 30 1 4.8345 -0.7773 5.7465 31 1 1.1823 -2.9765 5.9655 32 1 0.3643 -1.8144 3.9551 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259415821.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:39 Heat of formation + Delta-G solvation = -48.793308 kcal Electronic energy + Delta-G solvation = -14314.071778 eV Core-core repulsion = 11766.975297 eV Total energy + Delta-G solvation = -2547.096480 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.112 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.83266 -39.09148 -35.52189 -32.71395 -31.04906 -30.57260 -27.14298 -25.23050 -23.39553 -22.94901 -21.00989 -19.09335 -17.58879 -16.31262 -16.24105 -15.53819 -15.30145 -14.56153 -13.96343 -13.92347 -13.42896 -13.10430 -12.75740 -12.74973 -11.98016 -11.68128 -11.40796 -10.98737 -10.94898 -10.73676 -10.59529 -10.33660 -10.10065 -9.56940 -9.24495 -9.03234 -8.77637 -8.33422 -8.24985 -5.95861 -4.02222 1.25969 1.30928 3.31515 3.38281 3.41586 3.69367 4.33207 4.45705 4.79669 4.91492 5.08495 5.34716 5.38505 5.40252 5.76513 6.01978 6.03043 6.09229 6.18140 6.33085 6.42712 6.51592 6.78517 6.82411 6.92273 7.00771 7.09153 7.23001 7.44324 7.76164 8.01785 8.19918 8.49321 9.02046 9.62669 11.09887 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.052503 B = 0.005095 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.169876 B = 5493.919213 C = 5676.871121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.041 3.959 3 H 0.025 0.975 4 C -0.512 4.512 5 H 0.053 0.947 6 C 0.060 3.940 7 N -0.891 5.891 8 Si 0.889 3.111 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.275 1.275 12 C -0.098 4.098 13 C -0.087 4.087 14 C -0.072 4.072 15 C -0.092 4.092 16 C -0.152 4.152 17 C 0.077 3.923 18 F -0.147 7.147 19 C -0.152 4.152 20 C -0.092 4.092 21 H 0.009 0.991 22 H 0.079 0.921 23 H 0.023 0.977 24 H 0.259 0.741 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.905 -2.653 13.846 14.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.023 3.977 3 H 0.043 0.957 4 C -0.550 4.550 5 H 0.072 0.928 6 C -0.141 4.141 7 N -0.531 5.531 8 Si 0.717 3.283 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.200 1.200 12 C -0.136 4.136 13 C -0.124 4.124 14 C -0.072 4.072 15 C -0.111 4.111 16 C -0.171 4.171 17 C 0.058 3.942 18 F -0.126 7.126 19 C -0.171 4.171 20 C -0.110 4.110 21 H 0.028 0.972 22 H 0.098 0.902 23 H 0.042 0.958 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.150 0.850 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.848 -2.562 13.746 14.104 hybrid contribution 0.402 -0.651 -0.682 1.025 sum 2.250 -3.213 13.064 13.640 Atomic orbital electron populations 1.21844 0.98976 0.98771 0.99936 1.18686 0.92543 0.95735 0.90766 0.95689 1.21222 1.30850 1.12206 0.90741 0.92840 1.24964 0.95180 0.94994 0.98931 1.69893 1.37013 1.22989 1.23165 0.86644 0.79263 0.79442 0.82940 1.20763 1.21281 1.19980 1.21666 0.99870 0.98461 0.93595 1.20868 1.01287 0.98726 0.91528 1.20337 0.93968 0.96251 0.96676 1.20997 0.95698 0.99427 0.94932 1.21105 1.00409 0.97840 0.97713 1.17683 0.94431 0.96037 0.86070 1.91463 1.89425 1.80682 1.51054 1.21102 0.95125 1.02363 0.98484 1.20987 1.00283 0.95475 0.94291 0.97249 0.90209 0.95793 0.93130 0.93347 0.93344 0.90814 0.91253 0.84980 0.85154 0.85161 0.85009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.72 37.15 0.32 -2.92 16 2 C 0.04 1.00 2.30 -91.77 -0.21 0.79 16 3 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.51 -14.01 8.56 -34.44 -0.29 -14.31 16 5 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -25.50 11.32 55.43 0.63 -24.87 16 8 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 C -0.10 -1.96 4.60 -26.73 -0.12 -2.08 16 13 C -0.09 -1.42 5.10 -27.88 -0.14 -1.56 16 14 C -0.07 -1.05 5.13 -104.62 -0.54 -1.58 16 15 C -0.09 -1.23 9.70 -39.59 -0.38 -1.62 16 16 C -0.15 -1.91 10.03 -39.52 -0.40 -2.31 16 17 C 0.08 1.02 7.30 -39.42 -0.29 0.73 16 18 F -0.15 -1.98 17.27 2.25 0.04 -1.94 16 19 C -0.15 -1.92 10.03 -39.52 -0.40 -2.31 16 20 C -0.09 -1.23 9.70 -39.59 -0.38 -1.62 16 21 H 0.01 0.18 6.56 -51.93 -0.34 -0.16 16 22 H 0.08 2.11 6.07 -51.93 -0.32 1.79 16 23 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.07 1.18 6.51 -51.93 -0.34 0.84 16 28 H 0.07 1.10 8.09 -51.93 -0.42 0.68 16 29 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 30 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 31 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 LS Contribution 274.00 15.07 4.13 4.13 Total: -1.00 -28.38 274.00 -7.49 -35.87 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: -4.34 Total: -2.24 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: -2.93 Total: -27.22 kcal Atomic # 7 Polarization: -25.50 SS G_CDS: 0.63 Total: -24.87 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.38 -7.49 -35.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259415821.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.927 kcal (2) G-P(sol) polarization free energy of solvation -28.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds