Wall clock time and date at job start Mon Mar 30 2020 02:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 5 5 H 1.08003 * 120.00271 * 120.00264 * 4 2 1 6 6 C 1.37879 * 120.00161 * 299.99763 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46680 * 60.00301 * 8 6 4 10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46944 * 300.00817 * 8 6 4 12 12 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 13 13 C 1.53001 * 109.47279 * 65.00040 * 12 2 1 14 14 C 1.50701 * 109.47580 * 180.02562 * 13 12 2 15 15 C 1.38238 * 119.97134 * 269.72689 * 14 13 12 16 16 C 1.38200 * 120.02192 * 179.72472 * 15 14 13 17 17 C 1.38458 * 119.97478 * 0.57058 * 16 15 14 18 18 F 1.35101 * 120.02842 * 179.68557 * 17 16 15 19 19 C 1.38460 * 119.94757 * 359.70116 * 17 16 15 20 20 C 1.38194 * 119.97305 * 0.02562 * 19 17 16 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 24 24 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 25 25 H 1.08996 * 109.47729 * 184.99759 * 12 2 1 26 26 H 1.09001 * 109.47563 * 305.00337 * 12 2 1 27 27 H 1.09001 * 109.46924 * 300.00271 * 13 12 2 28 28 H 1.09000 * 109.47104 * 59.99686 * 13 12 2 29 29 H 1.07999 * 119.99245 * 359.97438 * 15 14 13 30 30 H 1.08004 * 120.01891 * 180.25180 * 16 15 14 31 31 H 1.08003 * 120.01584 * 179.97438 * 19 17 16 32 32 H 1.08007 * 119.98628 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.8063 -1.1207 4.0082 10 1 1.8260 -0.4204 5.2205 11 1 1.8258 -2.5201 4.0078 12 6 2.0400 -0.7212 -1.2491 13 6 1.6353 0.0689 -2.4953 14 6 2.1372 -0.6419 -3.7258 15 6 3.3884 -0.3446 -4.2329 16 6 3.8519 -0.9998 -5.3580 17 6 3.0580 -1.9457 -5.9840 18 9 3.5075 -2.5823 -7.0876 19 6 1.8027 -2.2385 -5.4784 20 6 1.3436 -1.5861 -4.3499 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 0.7082 1.1610 3.4844 25 1 3.1263 -0.7994 -1.2055 26 1 1.6054 -1.7198 -1.2951 27 1 0.5490 0.1471 -2.5390 28 1 2.0699 1.0674 -2.4494 29 1 4.0055 0.3969 -3.7475 30 1 4.8311 -0.7705 -5.7518 31 1 1.1823 -2.9759 -5.9661 32 1 0.3642 -1.8140 -3.9555 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259415823.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:41 Heat of formation + Delta-G solvation = -61.784397 kcal Electronic energy + Delta-G solvation = -14314.236240 eV Core-core repulsion = 11766.576424 eV Total energy + Delta-G solvation = -2547.659816 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.112 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.85436 -40.15187 -37.24636 -34.43517 -32.18922 -32.03337 -28.60284 -27.25845 -24.91420 -23.94184 -22.24564 -20.86137 -18.61361 -18.27814 -17.31712 -16.73725 -16.54496 -16.26529 -15.43443 -15.08041 -14.57279 -14.45864 -14.36260 -14.08644 -13.48769 -13.26789 -12.91895 -12.79870 -12.34670 -12.29253 -12.19683 -12.08138 -11.84213 -11.30774 -11.02047 -10.74746 -10.39160 -10.01598 -9.41399 -8.05469 -6.19374 0.21192 0.32608 1.42988 1.43645 1.51366 2.45242 2.66727 3.21615 3.33229 3.82424 3.90382 4.03007 4.27108 4.41623 4.55107 4.60185 4.76724 4.92567 5.01278 5.05670 5.14861 5.19417 5.21604 5.30957 5.36266 5.42801 5.55608 5.65074 5.72797 5.98698 6.04409 6.24006 6.43594 6.93440 7.48947 8.98416 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.052510 B = 0.005094 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.102215 B = 5495.017645 C = 5677.487384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.036 3.964 3 H -0.002 1.002 4 C -0.534 4.534 5 H 0.049 0.951 6 C 0.012 3.988 7 N -0.918 5.918 8 Si 0.950 3.050 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.272 1.272 12 C -0.086 4.086 13 C -0.075 4.075 14 C -0.088 4.088 15 C -0.097 4.097 16 C -0.152 4.152 17 C 0.068 3.932 18 F -0.149 7.149 19 C -0.151 4.151 20 C -0.096 4.096 21 H 0.024 0.976 22 H 0.037 0.963 23 H 0.048 0.952 24 H 0.260 0.740 25 H 0.042 0.958 26 H 0.046 0.954 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.142 0.858 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.200 -3.420 -14.704 15.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.017 3.983 3 H 0.016 0.984 4 C -0.572 4.572 5 H 0.067 0.933 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.776 3.224 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.198 1.198 12 C -0.124 4.124 13 C -0.113 4.113 14 C -0.088 4.088 15 C -0.115 4.115 16 C -0.170 4.170 17 C 0.049 3.951 18 F -0.128 7.128 19 C -0.170 4.170 20 C -0.114 4.114 21 H 0.043 0.957 22 H 0.056 0.944 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.160 0.840 30 H 0.169 0.831 31 H 0.169 0.831 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.138 -3.333 -14.612 15.139 hybrid contribution 0.339 -0.411 0.897 1.043 sum 2.477 -3.744 -13.715 14.431 Atomic orbital electron populations 1.21682 0.98357 0.98684 0.99810 1.18683 0.93096 0.94421 0.92077 0.98370 1.21596 1.30987 1.12374 0.92289 0.93255 1.25718 0.95391 0.95732 1.01823 1.70013 1.37748 1.24176 1.23816 0.85739 0.78800 0.78823 0.79058 1.19760 1.20972 1.19765 1.21436 0.99247 0.98275 0.93400 1.20656 1.01489 0.98364 0.90754 1.20219 0.94901 0.97185 0.96513 1.21150 0.95476 0.99716 0.95196 1.21321 1.01260 0.97184 0.97267 1.17905 0.94897 0.96224 0.86121 1.91461 1.89486 1.80784 1.51067 1.21326 0.95128 1.02426 0.98116 1.21148 1.00717 0.95110 0.94436 0.95703 0.94384 0.93277 0.93130 0.93932 0.93502 0.90484 0.91170 0.83990 0.83129 0.83069 0.83854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.00 8.72 71.98 0.63 -5.38 16 2 C 0.04 1.75 2.30 -11.54 -0.03 1.73 16 3 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 4 C -0.53 -29.45 8.56 25.60 0.22 -29.23 16 5 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 6 C 0.01 0.65 5.30 84.66 0.45 1.10 16 7 N -0.92 -53.13 11.32 21.45 0.24 -52.89 16 8 Si 0.95 43.65 29.54 68.60 2.03 45.68 16 9 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 12 C -0.09 -3.38 4.60 30.59 0.14 -3.24 16 13 C -0.08 -2.37 5.10 29.85 0.15 -2.21 16 14 C -0.09 -2.40 5.13 -19.86 -0.10 -2.50 16 15 C -0.10 -2.42 9.70 22.26 0.22 -2.20 16 16 C -0.15 -3.49 10.03 22.31 0.22 -3.27 16 17 C 0.07 1.64 7.30 22.37 0.16 1.80 16 18 F -0.15 -3.68 17.27 44.97 0.78 -2.91 16 19 C -0.15 -3.45 10.03 22.31 0.22 -3.23 16 20 C -0.10 -2.36 9.70 22.26 0.22 -2.15 16 21 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.04 1.52 6.56 -2.39 -0.02 1.50 16 23 H 0.05 2.61 6.07 -2.38 -0.01 2.60 16 24 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 25 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.08 2.34 6.51 -2.39 -0.02 2.33 16 28 H 0.07 2.17 8.08 -2.39 -0.02 2.15 16 29 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 30 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 31 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 32 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -59.66 274.00 6.64 -53.02 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: 1.09 Total: 5.88 kcal Atomic # 6 Polarization: -51.29 SS G_CDS: 2.50 Total: -48.79 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: 0.24 Total: -52.89 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.78 Total: -2.91 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -59.66 6.64 -53.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259415823.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.761 kcal (2) G-P(sol) polarization free energy of solvation -59.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds