Wall clock time and date at job start Mon Mar 30 2020 03:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40288 * 126.00102 * 2 1 4 4 C 1.30138 * 108.26701 * 180.02562 * 3 2 1 5 5 C 1.40433 * 108.28351 * 359.91882 * 4 3 2 6 6 C 1.35188 * 107.97588 * 0.09701 * 5 4 3 7 7 O 1.35758 * 126.26324 * 179.97438 * 6 5 4 8 8 C 1.50869 * 123.67699 * 180.13580 * 5 4 3 9 9 C 1.53393 * 108.18956 * 16.56496 * 8 5 4 10 10 H 1.09004 * 109.43048 * 69.52852 * 9 8 5 11 11 C 1.50703 * 109.42771 * 189.41812 * 9 8 5 12 12 H 1.07998 * 119.99728 * 5.65965 * 11 9 8 13 13 C 1.37881 * 120.00204 * 185.65211 * 11 9 8 14 14 N 1.31510 * 120.00062 * 195.57807 * 13 11 9 15 15 Si 1.86801 * 119.99692 * 15.30258 * 13 11 9 16 16 H 1.48500 * 109.46931 * 180.27445 * 15 13 11 17 17 H 1.48497 * 109.46999 * 300.27196 * 15 13 11 18 18 H 1.48501 * 109.47155 * 60.27540 * 15 13 11 19 19 C 1.53020 * 109.72445 * 309.49738 * 9 8 5 20 20 C 1.50959 * 128.25761 * 179.81440 * 4 3 2 21 21 H 1.09002 * 109.47266 * 89.97597 * 1 2 3 22 22 H 1.09006 * 109.46976 * 209.97332 * 1 2 3 23 23 H 1.09003 * 109.47198 * 329.97290 * 1 2 3 24 24 H 0.96704 * 114.00342 * 89.99980 * 7 6 5 25 25 H 1.08996 * 109.71768 * 256.89747 * 8 5 4 26 26 H 1.08999 * 109.75995 * 136.25843 * 8 5 4 27 27 H 0.96998 * 120.00023 * 354.37178 * 14 13 11 28 28 H 1.09000 * 109.42263 * 191.77796 * 19 9 8 29 29 H 1.09000 * 109.42338 * 311.60453 * 19 9 8 30 30 H 1.08998 * 109.72004 * 316.50829 * 20 4 3 31 31 H 1.09004 * 109.70991 * 77.10638 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2896 1.1349 0.0000 4 6 3.5292 0.7385 -0.0006 5 6 3.5426 -0.6657 0.0010 6 6 2.2608 -1.0953 0.0003 7 8 1.8472 -2.3883 0.0008 8 6 4.8061 -1.4902 0.0038 9 6 5.9698 -0.5817 0.4202 10 1 5.8661 -0.3191 1.4730 11 6 7.2731 -1.3089 0.2111 12 1 7.2800 -2.2792 -0.2632 13 6 8.4567 -0.7355 0.6251 14 7 9.6037 -1.2030 0.1832 15 14 8.4306 0.7103 1.8076 16 1 9.8224 1.1444 2.0895 17 1 7.6753 1.8344 1.1984 18 1 7.7733 0.3015 3.0749 19 6 5.9572 0.6937 -0.4252 20 6 4.7805 1.5829 -0.0046 21 1 -0.3634 0.0004 -1.0277 22 1 -0.3633 -0.8903 0.5134 23 1 -0.3634 0.8898 0.5143 24 1 1.7267 -2.7624 0.8844 25 1 4.9885 -1.8870 -0.9948 26 1 4.7086 -2.3115 0.7138 27 1 9.6222 -2.0008 -0.3682 28 1 6.8916 1.2354 -0.2780 29 1 5.8540 0.4300 -1.4777 30 1 4.6681 2.4036 -0.7130 31 1 4.9586 1.9811 0.9943 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259514280.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:04 Heat of formation + Delta-G solvation = -0.225600 kcal Electronic energy + Delta-G solvation = -15284.035081 eV Core-core repulsion = 12758.964616 eV Total energy + Delta-G solvation = -2525.070465 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.57246 -38.53974 -37.80557 -34.77413 -33.24100 -32.30491 -29.61163 -28.14139 -25.73144 -23.85319 -22.13639 -22.04813 -19.86442 -19.59661 -18.99333 -17.33749 -16.46959 -16.10618 -15.51029 -15.30874 -14.77869 -14.70086 -14.46228 -14.17004 -13.64705 -13.47469 -13.35337 -12.91083 -12.39202 -12.34198 -12.13545 -12.01640 -11.49780 -11.30240 -11.17786 -10.66288 -10.34009 -10.05677 -9.22923 -8.66572 -6.29294 0.67097 1.36765 1.53127 1.60354 1.64084 1.79899 2.56733 3.02384 3.14575 3.42926 4.09470 4.24318 4.30040 4.34875 4.39766 4.57222 4.63505 4.69043 4.77272 4.88306 4.94656 5.01710 5.22920 5.38887 5.46879 5.64734 5.74822 5.79821 6.09257 6.18566 6.61427 6.64621 6.70145 7.48999 8.71906 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.046053 B = 0.008423 C = 0.007562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.843172 B = 3323.518008 C = 3701.896647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.392 5.392 3 N -0.297 5.297 4 C 0.086 3.914 5 C -0.261 4.261 6 C 0.262 3.738 7 O -0.464 6.464 8 C -0.009 4.009 9 C 0.023 3.977 10 H 0.027 0.973 11 C -0.598 4.598 12 H 0.014 0.986 13 C -0.023 4.023 14 N -0.945 5.945 15 Si 1.081 2.919 16 H -0.294 1.294 17 H -0.230 1.230 18 H -0.266 1.266 19 C -0.113 4.113 20 C -0.038 4.038 21 H 0.080 0.920 22 H 0.108 0.892 23 H 0.100 0.900 24 H 0.417 0.583 25 H 0.039 0.961 26 H 0.056 0.944 27 H 0.249 0.751 28 H 0.064 0.936 29 H 0.042 0.958 30 H 0.094 0.906 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.718 3.870 2.809 19.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.185 5.185 3 N -0.122 5.122 4 C -0.080 4.080 5 C -0.273 4.273 6 C 0.093 3.907 7 O -0.271 6.271 8 C -0.047 4.047 9 C 0.004 3.996 10 H 0.045 0.955 11 C -0.636 4.636 12 H 0.033 0.967 13 C -0.220 4.220 14 N -0.582 5.582 15 Si 0.901 3.099 16 H -0.221 1.221 17 H -0.153 1.153 18 H -0.191 1.191 19 C -0.152 4.152 20 C -0.077 4.077 21 H 0.098 0.902 22 H 0.127 0.873 23 H 0.119 0.881 24 H 0.277 0.723 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.113 0.887 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.722 5.868 2.953 19.841 hybrid contribution -0.132 -2.758 -0.686 2.845 sum -18.854 3.110 2.267 19.243 Atomic orbital electron populations 1.22127 0.71932 1.05917 1.04399 1.49265 1.07896 1.02531 1.58850 1.77018 1.01213 1.06867 1.27115 1.22359 0.93723 0.93759 0.98164 1.20186 0.94238 0.95114 1.17803 1.18072 0.88239 0.81392 1.02995 1.84825 1.88472 1.18035 1.35729 1.19690 0.89703 0.96069 0.99237 1.18980 0.92516 0.92969 0.95176 0.95513 1.22288 0.94100 1.05104 1.42062 0.96726 1.27272 0.91559 1.04982 0.98178 1.70994 1.28791 1.22990 1.35402 0.83663 0.76222 0.74655 0.75330 1.22066 1.15346 1.19145 1.21949 0.96784 0.96769 0.99651 1.20283 0.87672 0.96292 1.03472 0.90151 0.87332 0.88096 0.72314 0.94276 0.92555 0.94186 0.91719 0.93887 0.88746 0.88903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.59 11.42 127.77 1.46 3.05 16 2 N -0.39 -11.17 4.03 -481.54 -1.94 -13.11 16 3 N -0.30 -10.05 12.55 -47.16 -0.59 -10.64 16 4 C 0.09 3.14 7.10 43.43 0.31 3.45 16 5 C -0.26 -9.84 5.91 -19.98 -0.12 -9.96 16 6 C 0.26 8.17 7.94 83.44 0.66 8.83 16 7 O -0.46 -11.48 13.58 -90.84 -1.23 -12.71 16 8 C -0.01 -0.37 5.52 30.03 0.17 -0.20 16 9 C 0.02 1.06 1.63 -11.40 -0.02 1.05 16 10 H 0.03 1.24 6.80 -2.39 -0.02 1.22 16 11 C -0.60 -34.32 8.83 25.60 0.23 -34.09 16 12 H 0.01 0.92 7.99 -2.91 -0.02 0.89 16 13 C -0.02 -1.35 5.28 84.66 0.45 -0.90 16 14 N -0.95 -59.97 13.69 21.45 0.29 -59.68 16 15 Si 1.08 49.25 26.19 68.60 1.80 51.05 16 16 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 17 H -0.23 -8.95 5.74 99.48 0.57 -8.38 16 18 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 19 C -0.11 -4.79 4.72 30.72 0.15 -4.64 16 20 C -0.04 -1.33 6.31 30.05 0.19 -1.14 16 21 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 22 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 23 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.42 5.79 9.06 -74.05 -0.67 5.12 16 25 H 0.04 1.79 8.12 -2.39 -0.02 1.77 16 26 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.25 16.11 8.73 -92.71 -0.81 15.30 16 28 H 0.06 2.80 4.77 -2.39 -0.01 2.79 16 29 H 0.04 1.87 8.10 -2.39 -0.02 1.86 16 30 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 31 H 0.09 2.94 8.14 -2.38 -0.02 2.92 16 Total: -1.00 -72.93 257.08 2.09 -70.84 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 0.30 Total: 8.80 kcal Atomic # 6 Polarization: -38.02 SS G_CDS: 3.47 Total: -34.56 kcal Atomic # 7 Polarization: -81.19 SS G_CDS: -2.24 Total: -83.43 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: -1.23 Total: -12.71 kcal Atomic # 14 Polarization: 49.25 SS G_CDS: 1.80 Total: 51.05 kcal Total: -72.93 2.09 -70.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259514280.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.619 kcal (2) G-P(sol) polarization free energy of solvation -72.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds