Wall clock time and date at job start Mon Mar 30 2020 03:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40293 * 126.00061 * 2 1 4 4 C 1.30146 * 108.26037 * 179.84129 * 3 2 1 5 5 C 1.40431 * 108.28582 * 0.46555 * 4 3 2 6 6 C 1.35187 * 107.97525 * 359.65474 * 5 4 3 7 7 O 1.35765 * 126.25917 * 180.11690 * 6 5 4 8 8 C 1.50864 * 123.67476 * 179.47822 * 5 4 3 9 9 C 1.53389 * 108.19723 * 343.51032 * 8 5 4 10 10 H 1.09007 * 109.42807 * 290.42581 * 9 8 5 11 11 C 1.50699 * 109.39706 * 170.54528 * 9 8 5 12 12 H 1.07999 * 119.99645 * 359.77878 * 11 9 8 13 13 C 1.37876 * 120.00162 * 179.77381 * 11 9 8 14 14 N 1.31506 * 119.99956 * 0.02562 * 13 11 9 15 15 Si 1.86804 * 119.99745 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.46994 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46894 * 120.00302 * 15 13 11 18 18 H 1.48496 * 109.46898 * 240.00071 * 15 13 11 19 19 C 1.53028 * 109.71269 * 50.49147 * 9 8 5 20 20 C 1.50967 * 128.25143 * 180.29101 * 4 3 2 21 21 H 1.09001 * 109.47060 * 269.69283 * 1 2 3 22 22 H 1.09004 * 109.47073 * 29.68772 * 1 2 3 23 23 H 1.09000 * 109.47212 * 149.68855 * 1 2 3 24 24 H 0.96701 * 113.99551 * 269.97320 * 7 6 5 25 25 H 1.09002 * 109.72119 * 103.17735 * 8 5 4 26 26 H 1.08996 * 109.72102 * 223.82810 * 8 5 4 27 27 H 0.97007 * 119.99986 * 179.97438 * 14 13 11 28 28 H 1.09002 * 109.42627 * 168.20370 * 19 9 8 29 29 H 1.09009 * 109.37644 * 48.35254 * 19 9 8 30 30 H 1.08995 * 109.71489 * 283.25877 * 20 4 3 31 31 H 1.09001 * 109.71455 * 43.85968 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2897 1.1350 0.0000 4 6 3.5293 0.7384 0.0034 5 6 3.5427 -0.6658 -0.0051 6 6 2.2608 -1.0952 -0.0060 7 8 1.8472 -2.3884 -0.0111 8 6 4.8061 -1.4902 -0.0156 9 6 5.9690 -0.5794 -0.4288 10 1 5.8636 -0.3111 -1.4801 11 6 7.2722 -1.3083 -0.2257 12 1 7.2724 -2.3163 0.1620 13 6 8.4643 -0.6884 -0.5349 14 7 8.4641 0.5391 -1.0066 15 14 10.0797 -1.5923 -0.2837 16 1 9.8088 -2.9500 0.2534 17 1 10.7899 -1.7070 -1.5828 18 1 10.9244 -0.8387 0.6773 19 6 5.9579 0.6910 0.4242 20 6 4.7807 1.5828 0.0109 21 1 -0.3633 -0.0055 1.0277 22 1 -0.3633 0.8928 -0.5090 23 1 -0.3634 -0.8872 -0.5187 24 1 1.7265 -2.7591 -0.8960 25 1 4.9907 -1.8931 0.9803 26 1 4.7064 -2.3068 -0.7306 27 1 9.3029 0.9754 -1.2237 28 1 6.8921 1.2335 0.2788 29 1 5.8559 0.4201 1.4752 30 1 4.9576 1.9867 -0.9859 31 1 4.6690 2.3995 0.7241 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259514281.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:06 Heat of formation + Delta-G solvation = 2.652833 kcal Electronic energy + Delta-G solvation = -15209.765900 eV Core-core repulsion = 12684.820253 eV Total energy + Delta-G solvation = -2524.945647 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.50299 -38.43204 -37.66132 -34.65791 -32.96835 -32.16942 -29.47572 -27.92490 -26.15263 -23.79484 -22.31904 -21.97737 -19.75360 -19.04805 -18.28293 -17.24222 -16.65595 -16.12311 -15.61753 -15.15962 -14.64060 -14.52495 -14.31185 -13.90284 -13.59557 -13.48434 -13.02423 -12.83816 -12.67511 -12.38194 -12.25493 -11.84448 -11.59025 -11.48397 -10.94186 -10.59098 -10.33860 -10.00925 -9.15593 -8.01830 -6.15347 0.71712 1.41705 1.45511 1.47925 1.58813 1.70146 2.49432 3.07464 3.24849 3.51387 4.18802 4.34951 4.41058 4.44976 4.49359 4.64429 4.69020 4.86753 4.92065 5.02428 5.12322 5.18415 5.40074 5.59343 5.64795 5.76063 5.80175 6.05497 6.19071 6.47488 6.66945 6.74419 6.95965 7.52226 9.02753 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.052735 B = 0.007448 C = 0.006669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.828747 B = 3758.329259 C = 4197.348523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.393 5.393 3 N -0.303 5.303 4 C 0.084 3.916 5 C -0.257 4.257 6 C 0.260 3.740 7 O -0.462 6.462 8 C -0.016 4.016 9 C 0.050 3.950 10 H -0.003 1.003 11 C -0.531 4.531 12 H 0.053 0.947 13 C 0.014 3.986 14 N -0.915 5.915 15 Si 0.952 3.048 16 H -0.269 1.269 17 H -0.282 1.282 18 H -0.281 1.281 19 C -0.099 4.099 20 C -0.031 4.031 21 H 0.081 0.919 22 H 0.098 0.902 23 H 0.109 0.891 24 H 0.416 0.584 25 H 0.049 0.951 26 H 0.057 0.943 27 H 0.261 0.739 28 H 0.077 0.923 29 H 0.029 0.971 30 H 0.073 0.927 31 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.676 -2.343 0.461 13.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.187 5.187 3 N -0.128 5.128 4 C -0.082 4.082 5 C -0.269 4.269 6 C 0.091 3.909 7 O -0.268 6.268 8 C -0.054 4.054 9 C 0.032 3.968 10 H 0.015 0.985 11 C -0.569 4.569 12 H 0.071 0.929 13 C -0.184 4.184 14 N -0.554 5.554 15 Si 0.778 3.222 16 H -0.193 1.193 17 H -0.208 1.208 18 H -0.207 1.207 19 C -0.138 4.138 20 C -0.070 4.070 21 H 0.099 0.901 22 H 0.116 0.884 23 H 0.127 0.873 24 H 0.276 0.724 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.512 -1.306 0.997 14.604 hybrid contribution 1.359 -1.092 -0.479 1.808 sum -13.153 -2.398 0.518 13.380 Atomic orbital electron populations 1.22115 0.71999 1.05814 1.04399 1.49259 1.07851 1.02559 1.59030 1.77013 1.01352 1.07022 1.27450 1.22428 0.93539 0.94241 0.97970 1.20256 0.94566 0.94920 1.17185 1.18036 0.88144 0.81412 1.03286 1.84821 1.88455 1.17865 1.35613 1.19887 0.89814 0.96112 0.99617 1.18633 0.91853 0.92399 0.93940 0.98476 1.21602 0.92184 1.00312 1.42785 0.92896 1.25691 1.02129 0.95687 0.94930 1.70001 1.27122 1.13318 1.44996 0.85596 0.79964 0.78979 0.77638 1.19296 1.20773 1.20678 1.21484 0.97083 0.97748 0.97483 1.20167 0.88453 0.96363 1.02009 0.90058 0.88364 0.87251 0.72412 0.93217 0.92472 0.92994 0.90475 0.95169 0.90893 0.89998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.79 11.42 127.77 1.46 3.25 16 2 N -0.39 -12.24 4.03 -481.53 -1.94 -14.18 16 3 N -0.30 -11.45 12.55 -47.15 -0.59 -12.04 16 4 C 0.08 3.47 7.10 43.43 0.31 3.78 16 5 C -0.26 -10.43 5.91 -19.98 -0.12 -10.54 16 6 C 0.26 8.65 7.94 83.44 0.66 9.31 16 7 O -0.46 -11.83 13.58 -90.91 -1.23 -13.07 16 8 C -0.02 -0.71 5.51 30.03 0.17 -0.54 16 9 C 0.05 2.57 2.05 -11.40 -0.02 2.55 16 10 H 0.00 -0.17 8.10 -2.38 -0.02 -0.18 16 11 C -0.53 -29.33 8.55 25.60 0.22 -29.12 16 12 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 13 C 0.01 0.78 5.25 84.66 0.44 1.22 16 14 N -0.91 -52.26 11.30 21.45 0.24 -52.02 16 15 Si 0.95 43.42 29.54 68.60 2.03 45.45 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 C -0.10 -4.82 5.04 30.72 0.15 -4.67 16 20 C -0.03 -1.29 6.31 30.05 0.19 -1.10 16 21 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 23 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.42 6.19 9.06 -74.06 -0.67 5.51 16 25 H 0.05 2.23 8.12 -2.39 -0.02 2.21 16 26 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.26 14.13 8.31 -92.70 -0.77 13.36 16 28 H 0.08 4.14 5.84 -2.39 -0.01 4.12 16 29 H 0.03 1.44 8.10 -2.38 -0.02 1.42 16 30 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 31 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -67.12 261.53 2.43 -64.69 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: 0.47 Total: 7.03 kcal Atomic # 6 Polarization: -29.33 SS G_CDS: 3.46 Total: -25.87 kcal Atomic # 7 Polarization: -75.95 SS G_CDS: -2.29 Total: -78.24 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -1.23 Total: -13.07 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -67.12 2.43 -64.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259514281.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.342 kcal (2) G-P(sol) polarization free energy of solvation -67.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds