Wall clock time and date at job start Mon Mar 30 2020 03:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36931 * 120.00532 * 2 1 4 4 H 1.07998 * 120.00441 * 203.73920 * 3 2 1 5 5 C 1.38813 * 119.99861 * 23.73783 * 3 2 1 6 6 N 1.31619 * 120.00201 * 11.14205 * 5 3 2 7 7 Si 1.86803 * 120.00318 * 191.14685 * 5 3 2 8 8 H 1.48506 * 109.46962 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47236 * 119.99671 * 7 5 3 10 10 H 1.48499 * 109.47188 * 239.99800 * 7 5 3 11 11 C 1.46505 * 119.99804 * 179.97438 * 2 1 3 12 12 H 1.09005 * 109.41445 * 179.85120 * 11 2 1 13 13 C 1.52997 * 109.35400 * 299.67845 * 11 2 1 14 14 C 1.53466 * 110.01003 * 191.82652 * 13 11 2 15 15 C 1.50618 * 108.07703 * 309.21685 * 14 13 11 16 16 N 1.29068 * 130.42439 * 196.92631 * 15 14 13 17 17 O 1.21522 * 111.29004 * 179.71209 * 16 15 14 18 18 C 1.34584 * 111.65243 * 359.92003 * 17 16 15 19 19 C 1.33894 * 106.03451 * 0.14283 * 18 17 16 20 20 C 1.50147 * 131.33116 * 179.68987 * 19 18 17 21 21 H 1.08997 * 109.47040 * 274.70076 * 1 2 3 22 22 H 1.09005 * 109.46936 * 34.69383 * 1 2 3 23 23 H 1.08992 * 109.47195 * 154.69284 * 1 2 3 24 24 H 0.97000 * 120.00453 * 180.02562 * 6 5 3 25 25 H 1.09008 * 109.37585 * 311.98827 * 13 11 2 26 26 H 1.08994 * 109.38297 * 71.76768 * 13 11 2 27 27 H 1.09004 * 109.73772 * 189.57288 * 14 13 11 28 28 H 1.08993 * 109.73995 * 68.86408 * 14 13 11 29 29 H 1.08005 * 126.98611 * 180.14994 * 18 17 16 30 30 H 1.09001 * 109.75332 * 315.98017 * 20 19 18 31 31 H 1.09008 * 109.75021 * 76.66522 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1612 1.2254 -0.3765 5 6 1.5438 2.3371 0.4839 6 7 0.4058 2.2559 1.1401 7 14 2.3435 4.0019 0.2039 8 1 3.6076 3.8225 -0.5547 9 1 1.4205 4.8706 -0.5698 10 1 2.6387 4.6360 1.5138 11 6 2.1975 -1.2688 0.0006 12 1 3.2690 -1.0686 -0.0022 13 6 1.8320 -2.0647 1.2551 14 6 2.7953 -3.2471 1.4260 15 6 2.8483 -3.9990 0.1220 16 7 3.2701 -5.1902 -0.1407 17 8 3.1463 -5.4519 -1.3209 18 6 2.6056 -4.4254 -2.0030 19 6 2.3958 -3.4544 -1.1053 20 6 1.8255 -2.0734 -1.2534 21 1 -0.3633 0.0842 1.0242 22 1 -0.3633 0.8450 -0.5850 23 1 -0.3633 -0.9290 -0.4393 24 1 -0.0179 3.0604 1.4780 25 1 1.8984 -1.4149 2.1278 26 1 0.8133 -2.4408 1.1609 27 1 2.4337 -3.9052 2.2161 28 1 3.7892 -2.8785 1.6792 29 1 2.3854 -4.3918 -3.0599 30 1 2.2464 -1.5938 -2.1371 31 1 0.7410 -2.1308 -1.3469 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259526466.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:26 Heat of formation + Delta-G solvation = 60.355120 kcal Electronic energy + Delta-G solvation = -15315.796635 eV Core-core repulsion = 12793.353147 eV Total energy + Delta-G solvation = -2522.443488 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.81969 -39.33512 -36.43418 -33.80997 -33.34158 -31.98117 -29.93074 -28.01068 -25.98514 -24.65756 -22.86007 -22.15882 -20.20629 -18.82466 -18.42699 -18.21260 -17.01847 -16.22404 -15.74417 -15.19060 -14.76059 -14.63245 -14.26913 -13.86670 -13.65823 -13.21929 -13.12654 -12.74236 -12.70135 -12.38819 -12.20238 -12.05647 -11.86018 -11.53202 -11.44164 -10.75840 -10.62372 -10.21776 -8.75208 -7.80420 -5.29797 0.66276 1.32306 1.47265 1.48964 1.58729 2.45344 2.52035 3.07808 3.33234 3.54500 3.79205 3.96272 4.10626 4.29263 4.41065 4.50842 4.55677 4.70581 4.84351 4.88846 4.93542 4.99876 5.15317 5.16925 5.29745 5.44445 5.50787 5.68163 5.77163 6.36171 7.18125 7.35939 7.89751 8.33728 9.22483 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.053511 B = 0.006991 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.129355 B = 4004.303999 C = 4066.318874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.610 5.610 3 C -0.261 4.261 4 H 0.070 0.930 5 C -0.052 4.052 6 N -0.938 5.938 7 Si 0.966 3.034 8 H -0.267 1.267 9 H -0.291 1.291 10 H -0.294 1.294 11 C 0.175 3.825 12 H 0.054 0.946 13 C -0.117 4.117 14 C -0.032 4.032 15 C 0.013 3.987 16 N -0.384 5.384 17 O 0.076 5.924 18 C -0.035 4.035 19 C -0.211 4.211 20 C -0.047 4.047 21 H 0.003 0.997 22 H 0.014 0.986 23 H 0.032 0.968 24 H 0.247 0.753 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.261 0.739 30 H 0.080 0.920 31 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.988 -11.286 -5.671 12.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.332 5.332 3 C -0.391 4.391 4 H 0.088 0.912 5 C -0.247 4.247 6 N -0.585 5.585 7 Si 0.795 3.205 8 H -0.191 1.191 9 H -0.218 1.218 10 H -0.221 1.221 11 C 0.068 3.932 12 H 0.073 0.927 13 C -0.157 4.157 14 C -0.071 4.071 15 C -0.148 4.148 16 N -0.092 5.092 17 O 0.015 5.985 18 C -0.114 4.114 19 C -0.216 4.216 20 C -0.086 4.086 21 H 0.021 0.979 22 H 0.033 0.967 23 H 0.050 0.950 24 H 0.057 0.943 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.276 0.724 30 H 0.099 0.901 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.430 -12.140 -4.902 13.535 hybrid contribution -0.262 1.923 -0.057 1.941 sum 3.168 -10.218 -4.959 11.791 Atomic orbital electron populations 1.20493 0.82847 0.95815 0.97515 1.44141 1.01993 1.01017 1.86024 1.19594 0.98861 0.86844 1.33840 0.91206 1.25774 0.98541 1.01786 0.98561 1.70228 1.20086 1.27563 1.40656 0.85216 0.78099 0.80241 0.76969 1.19095 1.21823 1.22108 1.20535 0.95249 0.84934 0.92464 0.92741 1.21982 0.98547 0.95535 0.99623 1.20041 1.01245 0.95007 0.90802 1.23711 1.00197 0.91424 0.99473 1.73489 1.21497 1.17720 0.96508 1.85036 1.61506 1.38186 1.13797 1.25909 0.98421 0.85758 1.01346 1.21214 1.07462 0.99941 0.92964 1.20304 1.00420 0.88171 0.99688 0.97917 0.96676 0.94959 0.94347 0.92582 0.92561 0.89016 0.89300 0.72350 0.90134 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.56 8.24 127.77 1.05 9.62 16 2 N -0.61 -29.50 2.80 -701.73 -1.97 -31.47 16 3 C -0.26 -14.05 9.58 84.03 0.81 -13.24 16 4 H 0.07 3.66 7.82 -2.91 -0.02 3.63 16 5 C -0.05 -2.85 5.13 84.86 0.44 -2.42 16 6 N -0.94 -54.96 10.65 21.65 0.23 -54.73 16 7 Si 0.97 44.56 29.57 68.60 2.03 46.59 16 8 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 9 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 10 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 11 C 0.18 6.82 2.54 45.18 0.11 6.94 16 12 H 0.05 2.21 7.83 -2.38 -0.02 2.19 16 13 C -0.12 -4.16 4.95 30.75 0.15 -4.00 16 14 C -0.03 -0.97 6.32 29.98 0.19 -0.78 16 15 C 0.01 0.39 7.22 43.79 0.32 0.71 16 16 N -0.38 -11.83 12.06 -52.03 -0.63 -12.46 16 17 O 0.08 1.99 11.23 65.60 0.74 2.73 16 18 C -0.04 -0.75 12.28 66.83 0.82 0.07 16 19 C -0.21 -5.96 6.05 -20.17 -0.12 -6.08 16 20 C -0.05 -1.48 5.71 29.86 0.17 -1.30 16 21 H 0.00 0.13 7.35 -2.39 -0.02 0.12 16 22 H 0.01 0.77 7.31 -2.38 -0.02 0.75 16 23 H 0.03 1.30 6.31 -2.39 -0.02 1.29 16 24 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 25 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 26 H 0.06 1.99 8.00 -2.39 -0.02 1.97 16 27 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.26 2.78 8.06 -2.91 -0.02 2.76 16 30 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.08 2.47 6.39 -2.38 -0.02 2.46 16 Total: -1.00 -63.77 255.63 5.46 -58.31 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: 1.12 Total: 1.53 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: 3.94 Total: -10.50 kcal Atomic # 7 Polarization: -96.29 SS G_CDS: -2.36 Total: -98.66 kcal Atomic # 8 Polarization: 1.99 SS G_CDS: 0.74 Total: 2.73 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -63.77 5.46 -58.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259526466.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.667 kcal (2) G-P(sol) polarization free energy of solvation -63.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds