Wall clock time and date at job start Mon Mar 30 2020 03:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40290 * 126.00343 * 2 1 4 4 C 1.30139 * 108.27167 * 180.02562 * 3 2 1 5 5 C 1.40436 * 108.27940 * 359.89203 * 4 3 2 6 6 C 1.35192 * 107.97683 * 0.12605 * 5 4 3 7 7 O 1.35756 * 126.25817 * 179.90734 * 6 5 4 8 8 C 1.50869 * 123.67547 * 180.14805 * 5 4 3 9 9 C 1.53394 * 108.18911 * 16.50589 * 8 5 4 10 10 C 1.53032 * 109.67277 * 309.51830 * 9 8 5 11 11 H 1.09000 * 109.42249 * 311.59944 * 10 9 8 12 12 C 1.50696 * 109.42201 * 191.77792 * 10 9 8 13 13 H 1.08003 * 120.00404 * 359.97438 * 12 10 9 14 14 C 1.37881 * 119.99674 * 180.02562 * 12 10 9 15 15 N 1.31516 * 119.99647 * 179.97438 * 14 12 10 16 16 Si 1.86800 * 120.00218 * 359.97438 * 14 12 10 17 17 H 1.48499 * 109.46619 * 90.00498 * 16 14 12 18 18 H 1.48494 * 109.47252 * 210.00800 * 16 14 12 19 19 H 1.48501 * 109.46877 * 330.00917 * 16 14 12 20 20 C 1.50957 * 128.25912 * 179.69362 * 4 3 2 21 21 H 1.09001 * 109.47032 * 270.02919 * 1 2 3 22 22 H 1.08999 * 109.47321 * 30.02535 * 1 2 3 23 23 H 1.08998 * 109.47382 * 150.03023 * 1 2 3 24 24 H 0.96693 * 114.00331 * 90.00223 * 7 6 5 25 25 H 1.08992 * 109.71909 * 256.83129 * 8 5 4 26 26 H 1.08994 * 109.72069 * 136.17674 * 8 5 4 27 27 H 1.09002 * 109.43270 * 69.56843 * 9 8 5 28 28 H 1.09005 * 109.43095 * 189.47103 * 9 8 5 29 29 H 0.97009 * 119.99447 * 179.97438 * 15 14 12 30 30 H 1.08998 * 109.71511 * 316.52338 * 20 4 3 31 31 H 1.09000 * 109.71532 * 77.11429 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2897 1.1349 0.0000 4 6 3.5292 0.7386 -0.0006 5 6 3.5427 -0.6657 0.0016 6 6 2.2608 -1.0952 0.0006 7 8 1.8473 -2.3883 0.0003 8 6 4.8061 -1.4902 0.0049 9 6 5.9700 -0.5812 0.4195 10 6 5.9556 0.6931 -0.4279 11 1 5.8516 0.4276 -1.4799 12 6 7.2471 1.4431 -0.2269 13 1 8.0018 1.0505 0.4385 14 6 7.4649 2.6312 -0.8919 15 7 8.5918 3.2860 -0.7161 16 14 6.1594 3.3107 -2.0423 17 1 5.2393 4.1929 -1.2806 18 1 6.8110 4.0912 -3.1245 19 1 5.3901 2.1878 -2.6361 20 6 4.7806 1.5829 -0.0071 21 1 -0.3633 0.0005 1.0277 22 1 -0.3634 0.8897 -0.5142 23 1 -0.3634 -0.8902 -0.5133 24 1 1.7268 -2.7630 0.8835 25 1 4.9880 -1.8885 -0.9932 26 1 4.7084 -2.3101 0.7164 27 1 5.8673 -0.3177 1.4722 28 1 6.9127 -1.1070 0.2676 29 1 8.7452 4.1218 -1.1843 30 1 4.6675 2.4024 -0.7169 31 1 4.9594 1.9831 0.9909 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259548436.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:08 Heat of formation + Delta-G solvation = 32.266822 kcal Electronic energy + Delta-G solvation = -15323.937472 eV Core-core repulsion = 12800.275985 eV Total energy + Delta-G solvation = -2523.661488 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.25079 -37.33508 -36.29035 -32.89114 -31.95090 -30.73512 -27.67929 -27.20889 -24.44384 -22.50508 -20.94736 -20.34582 -18.32270 -17.83636 -16.75725 -16.09749 -15.25869 -14.59836 -14.29632 -14.06903 -13.37799 -13.11642 -12.71992 -12.59227 -12.44590 -12.34359 -11.94497 -11.32377 -11.08565 -10.84350 -10.31034 -10.23121 -9.87817 -9.66943 -9.15097 -9.02429 -8.66954 -8.51272 -7.91542 -6.04997 -4.04274 1.93128 2.55052 3.07989 3.33313 3.43993 3.47126 4.11539 4.44713 4.63043 5.12564 5.19619 5.32626 5.38106 5.62824 5.67711 5.83547 6.01290 6.29089 6.30929 6.36360 6.48634 6.61650 6.72028 6.81587 6.93914 7.05625 7.28743 7.56384 7.68232 7.79346 8.06055 8.55548 8.99960 9.57891 11.08061 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.040247 B = 0.009244 C = 0.007919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.531099 B = 3028.194870 C = 3535.104745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.401 5.401 3 N -0.287 5.287 4 C 0.106 3.894 5 C -0.228 4.228 6 C 0.243 3.757 7 O -0.466 6.466 8 C -0.037 4.037 9 C -0.097 4.097 10 C 0.018 3.982 11 H 0.032 0.968 12 C -0.512 4.512 13 H 0.077 0.923 14 C 0.072 3.928 15 N -0.900 5.900 16 Si 0.876 3.124 17 H -0.276 1.276 18 H -0.295 1.295 19 H -0.264 1.264 20 C -0.046 4.046 21 H 0.067 0.933 22 H 0.086 0.914 23 H 0.082 0.918 24 H 0.390 0.610 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.264 0.736 30 H 0.064 0.936 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.353 -9.130 2.646 17.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.194 5.194 3 N -0.111 5.111 4 C -0.061 4.061 5 C -0.241 4.241 6 C 0.077 3.923 7 O -0.268 6.268 8 C -0.076 4.076 9 C -0.135 4.135 10 C -0.001 4.001 11 H 0.050 0.950 12 C -0.550 4.550 13 H 0.095 0.905 14 C -0.130 4.130 15 N -0.538 5.538 16 Si 0.706 3.294 17 H -0.202 1.202 18 H -0.223 1.223 19 H -0.189 1.189 20 C -0.085 4.085 21 H 0.085 0.915 22 H 0.104 0.896 23 H 0.101 0.899 24 H 0.246 0.754 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.183 -8.048 1.985 17.298 hybrid contribution -0.571 -0.265 -0.131 0.643 sum -15.754 -8.312 1.854 17.909 Atomic orbital electron populations 1.21675 0.75224 1.04115 1.02594 1.48960 1.06276 1.03586 1.60603 1.77207 1.01720 1.05487 1.26654 1.22809 0.93497 0.93963 0.95873 1.19996 0.93385 0.94816 1.15853 1.18137 0.88748 0.80172 1.05245 1.84863 1.88914 1.19586 1.33441 1.20063 0.90699 0.96035 1.00777 1.21499 0.96009 0.96224 0.99767 1.19179 0.92894 0.92169 0.95867 0.95037 1.21058 1.00365 1.05992 1.27554 0.90454 1.25013 0.95181 0.96672 0.96118 1.69897 1.24443 1.16400 1.43030 0.87008 0.81733 0.79533 0.81085 1.20232 1.22285 1.18891 1.20962 0.88002 0.96936 1.02612 0.91483 0.89563 0.89928 0.75438 0.91636 0.92405 0.92701 0.91773 0.92643 0.91842 0.89511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.15 11.42 59.85 0.68 1.83 16 2 N -0.40 -6.60 4.03 -68.42 -0.28 -6.87 16 3 N -0.29 -5.78 12.55 33.74 0.42 -5.36 16 4 C 0.11 2.22 7.10 -82.36 -0.58 1.64 16 5 C -0.23 -4.27 5.91 -104.80 -0.62 -4.89 16 6 C 0.24 3.97 7.94 -17.07 -0.14 3.83 16 7 O -0.47 -5.83 13.58 -18.98 -0.26 -6.09 16 8 C -0.04 -0.65 6.28 -27.60 -0.17 -0.82 16 9 C -0.10 -1.92 5.13 -26.51 -0.14 -2.06 16 10 C 0.02 0.43 1.63 -91.61 -0.15 0.28 16 11 H 0.03 0.78 7.17 -51.93 -0.37 0.40 16 12 C -0.51 -14.13 9.09 -34.44 -0.31 -14.45 16 13 H 0.08 2.28 7.99 -52.48 -0.42 1.86 16 14 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 15 N -0.90 -27.37 13.96 55.43 0.77 -26.59 16 16 Si 0.88 22.21 24.27 -169.99 -4.13 18.08 16 17 H -0.28 -6.84 6.95 56.52 0.39 -6.45 16 18 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 19 H -0.26 -6.57 6.51 56.52 0.37 -6.20 16 20 C -0.05 -1.05 4.88 -27.61 -0.13 -1.18 16 21 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 23 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.39 2.82 9.06 45.56 0.41 3.23 16 25 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.05 1.06 8.10 -51.93 -0.42 0.64 16 28 H 0.06 1.23 8.09 -51.93 -0.42 0.81 16 29 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.06 1.53 3.58 -51.93 -0.19 1.34 16 31 H 0.09 1.94 8.12 -51.93 -0.42 1.52 16 LS Contribution 254.91 15.07 3.84 3.84 Total: -1.00 -33.08 254.91 -4.40 -37.48 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -3.12 Total: -0.64 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -1.66 Total: -13.85 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.92 Total: -38.83 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -0.26 Total: -6.09 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.13 Total: 18.08 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -33.08 -4.40 -37.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259548436.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.747 kcal (2) G-P(sol) polarization free energy of solvation -33.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds