Wall clock time and date at job start Mon Mar 30 2020 03:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40300 * 126.00419 * 2 1 4 4 C 1.30133 * 108.26893 * 180.02562 * 3 2 1 5 5 C 1.40440 * 108.28206 * 0.03888 * 4 3 2 6 6 C 1.35190 * 107.97858 * 359.91671 * 5 4 3 7 7 O 1.35756 * 126.26410 * 180.12171 * 6 5 4 8 8 C 1.50863 * 123.67154 * 179.82422 * 5 4 3 9 9 C 1.53385 * 108.19567 * 343.46003 * 8 5 4 10 10 C 1.53032 * 109.71596 * 50.51084 * 9 8 5 11 11 H 1.08997 * 109.42073 * 48.38789 * 10 9 8 12 12 C 1.50698 * 109.42279 * 168.21196 * 10 9 8 13 13 H 1.08003 * 120.00546 * 5.70090 * 12 10 9 14 14 C 1.37879 * 119.99828 * 185.69876 * 12 10 9 15 15 N 1.31513 * 119.99851 * 9.49204 * 14 12 10 16 16 Si 1.86796 * 119.99939 * 189.49246 * 14 12 10 17 17 H 1.48508 * 109.47253 * 94.98991 * 16 14 12 18 18 H 1.48501 * 109.47060 * 214.98615 * 16 14 12 19 19 H 1.48500 * 109.47419 * 334.98862 * 16 14 12 20 20 C 1.50955 * 128.25765 * 180.16040 * 4 3 2 21 21 H 1.08997 * 109.47010 * 90.02441 * 1 2 3 22 22 H 1.08999 * 109.47482 * 210.03163 * 1 2 3 23 23 H 1.09003 * 109.47399 * 330.02947 * 1 2 3 24 24 H 0.96700 * 113.99468 * 90.00304 * 7 6 5 25 25 H 1.09004 * 109.72025 * 223.77938 * 8 5 4 26 26 H 1.09000 * 109.75698 * 103.15316 * 8 5 4 27 27 H 1.09008 * 109.43002 * 290.43833 * 9 8 5 28 28 H 1.09002 * 109.39537 * 170.56507 * 9 8 5 29 29 H 0.96999 * 120.00146 * 180.02562 * 15 14 12 30 30 H 1.09002 * 109.71510 * 282.88548 * 20 4 3 31 31 H 1.09002 * 109.71538 * 43.52653 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2897 1.1350 0.0000 4 6 3.5292 0.7386 -0.0006 5 6 3.5426 -0.6658 -0.0018 6 6 2.2608 -1.0953 -0.0002 7 8 1.8472 -2.3883 0.0017 8 6 4.8061 -1.4902 -0.0066 9 6 5.9692 -0.5817 -0.4244 10 6 5.9578 0.6936 0.4215 11 1 5.8560 0.4294 1.4740 12 6 7.2494 1.4424 0.2166 13 1 7.9627 1.0980 -0.5176 14 6 7.5206 2.5672 0.9665 15 7 6.7483 2.8812 1.9836 16 14 8.9848 3.6449 0.5377 17 1 8.5383 4.7640 -0.3305 18 1 9.5786 4.1919 1.7841 19 1 10.0014 2.8358 -0.1814 20 6 4.7806 1.5829 0.0025 21 1 -0.3633 -0.0004 -1.0276 22 1 -0.3634 -0.8897 0.5143 23 1 -0.3634 0.8903 0.5134 24 1 1.7281 -2.7618 0.8856 25 1 4.7070 -2.3110 -0.7170 26 1 4.9903 -1.8879 0.9914 27 1 5.8644 -0.3194 -1.4773 28 1 6.9117 -1.1081 -0.2741 29 1 6.9388 3.6727 2.5110 30 1 4.9579 1.9811 -0.9965 31 1 4.6690 2.4032 0.7116 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259548439.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:09 Heat of formation + Delta-G solvation = -0.183351 kcal Electronic energy + Delta-G solvation = -15199.363910 eV Core-core repulsion = 12674.295277 eV Total energy + Delta-G solvation = -2525.068633 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.48053 -38.43670 -37.61672 -34.66198 -33.28598 -31.89854 -28.86915 -28.56408 -26.25078 -23.78684 -22.33581 -21.89372 -19.75735 -18.94149 -18.30286 -17.28095 -16.50743 -16.24514 -15.73193 -15.22653 -14.60208 -14.47947 -14.21089 -13.82939 -13.63025 -13.44007 -13.19642 -12.81198 -12.67508 -12.30017 -12.27860 -12.17911 -11.60967 -11.21773 -10.89417 -10.69907 -10.44809 -9.96077 -9.15510 -8.08935 -6.17684 0.74867 1.43823 1.46813 1.47350 1.56958 1.73718 2.48015 3.07868 3.22119 3.55850 4.24711 4.31945 4.38792 4.39987 4.47377 4.62972 4.72336 4.94579 4.95892 5.01356 5.05810 5.26761 5.34793 5.50442 5.65925 5.69523 5.81293 5.99763 6.02683 6.41155 6.71013 6.78361 6.95226 7.49827 8.99950 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.049086 B = 0.007540 C = 0.006823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.295245 B = 3712.760933 C = 4103.030757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.396 5.396 3 N -0.317 5.317 4 C 0.086 3.914 5 C -0.261 4.261 6 C 0.264 3.736 7 O -0.458 6.458 8 C -0.026 4.026 9 C -0.101 4.101 10 C 0.054 3.946 11 H 0.003 0.997 12 C -0.533 4.533 13 H 0.059 0.941 14 C 0.015 3.985 15 N -0.919 5.919 16 Si 0.951 3.049 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.264 1.264 20 C -0.018 4.018 21 H 0.081 0.919 22 H 0.113 0.887 23 H 0.092 0.908 24 H 0.417 0.583 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.061 0.939 29 H 0.260 0.740 30 H 0.056 0.944 31 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.627 -9.256 -2.493 14.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.190 5.190 3 N -0.143 5.143 4 C -0.080 4.080 5 C -0.273 4.273 6 C 0.096 3.904 7 O -0.264 6.264 8 C -0.064 4.064 9 C -0.139 4.139 10 C 0.034 3.966 11 H 0.022 0.978 12 C -0.571 4.571 13 H 0.078 0.922 14 C -0.184 4.184 15 N -0.558 5.558 16 Si 0.776 3.224 17 H -0.204 1.204 18 H -0.212 1.212 19 H -0.188 1.188 20 C -0.058 4.058 21 H 0.100 0.900 22 H 0.131 0.869 23 H 0.110 0.890 24 H 0.277 0.723 25 H 0.099 0.901 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.598 -8.220 -2.951 14.518 hybrid contribution 1.000 0.263 0.570 1.181 sum -10.598 -7.957 -2.381 13.465 Atomic orbital electron populations 1.22094 0.72212 1.05690 1.04353 1.49321 1.07875 1.02764 1.59014 1.77096 1.02026 1.07281 1.27903 1.22736 0.93445 0.94925 0.96912 1.20144 0.94872 0.94156 1.18148 1.18001 0.88045 0.81410 1.02974 1.84807 1.88491 1.17403 1.35714 1.19937 0.89293 0.95893 1.01266 1.21552 0.97208 0.96170 0.98943 1.18592 0.91853 0.91741 0.94366 0.97844 1.21558 1.03940 1.11050 1.20506 0.92229 1.25765 0.99194 0.99155 0.94280 1.70103 1.40946 1.26564 1.18195 0.85657 0.79884 0.79210 0.77617 1.20395 1.21178 1.18836 1.20139 0.88443 0.97266 0.99965 0.90021 0.86905 0.88968 0.72290 0.90120 0.91434 0.93443 0.91999 0.93064 0.92516 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.95 11.42 127.77 1.46 3.41 16 2 N -0.40 -13.04 4.03 -481.56 -1.94 -14.98 16 3 N -0.32 -13.51 12.55 -47.16 -0.59 -14.10 16 4 C 0.09 3.87 7.10 43.43 0.31 4.17 16 5 C -0.26 -10.14 5.91 -19.98 -0.12 -10.26 16 6 C 0.26 8.53 7.94 83.44 0.66 9.19 16 7 O -0.46 -10.45 13.58 -90.81 -1.23 -11.69 16 8 C -0.03 -0.92 6.28 30.03 0.19 -0.73 16 9 C -0.10 -4.23 5.13 30.73 0.16 -4.07 16 10 C 0.05 2.74 1.91 -11.41 -0.02 2.72 16 11 H 0.00 0.19 8.04 -2.39 -0.02 0.17 16 12 C -0.53 -29.39 8.43 25.60 0.22 -29.17 16 13 H 0.06 3.19 7.77 -2.91 -0.02 3.17 16 14 C 0.02 0.84 5.25 84.66 0.44 1.29 16 15 N -0.92 -54.32 12.25 21.45 0.26 -54.06 16 16 Si 0.95 43.81 29.55 68.60 2.03 45.84 16 17 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 18 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 19 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 20 C -0.02 -0.93 5.32 30.05 0.16 -0.77 16 21 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 22 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.42 5.01 9.06 -74.06 -0.67 4.34 16 25 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 26 H 0.07 2.28 8.14 -2.39 -0.02 2.27 16 27 H 0.05 1.96 8.10 -2.38 -0.02 1.94 16 28 H 0.06 2.47 8.09 -2.39 -0.02 2.45 16 29 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 30 H 0.06 2.86 8.12 -2.39 -0.02 2.84 16 31 H 0.05 3.10 7.17 -2.39 -0.02 3.08 16 Total: -1.00 -69.54 263.33 2.45 -67.09 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: 0.47 Total: 6.11 kcal Atomic # 6 Polarization: -27.67 SS G_CDS: 3.46 Total: -24.21 kcal Atomic # 7 Polarization: -80.87 SS G_CDS: -2.27 Total: -83.14 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: -1.23 Total: -11.69 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -69.54 2.45 -67.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259548439.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.907 kcal (2) G-P(sol) polarization free energy of solvation -69.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds