Wall clock time and date at job start Mon Mar 30 2020 03:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36940 * 120.00269 * 2 1 4 4 H 1.07993 * 119.99871 * 201.91637 * 3 2 1 5 5 C 1.38807 * 119.99412 * 21.91631 * 3 2 1 6 6 N 1.31619 * 120.00626 * 13.01467 * 5 3 2 7 7 Si 1.86806 * 119.99624 * 193.01045 * 5 3 2 8 8 H 1.48499 * 109.47171 * 90.00650 * 7 5 3 9 9 H 1.48502 * 109.47047 * 210.00199 * 7 5 3 10 10 H 1.48497 * 109.47147 * 329.99845 * 7 5 3 11 11 C 1.46501 * 120.00089 * 180.02562 * 2 1 3 12 12 H 1.08999 * 109.73962 * 180.66229 * 11 2 1 13 13 C 1.53468 * 109.74238 * 59.99833 * 11 2 1 14 14 C 1.52999 * 110.01526 * 189.56984 * 13 11 2 15 15 C 1.53572 * 109.82890 * 71.74540 * 14 13 11 16 16 C 1.50151 * 108.01931 * 309.87331 * 15 14 13 17 17 C 1.33886 * 131.32759 * 196.38018 * 16 15 14 18 18 O 1.34591 * 106.03081 * 179.66951 * 17 16 15 19 19 N 1.21515 * 111.65350 * 0.05453 * 18 17 16 20 20 C 1.29063 * 111.29254 * 0.08772 * 19 18 17 21 21 H 1.09007 * 109.47207 * 274.34637 * 1 2 3 22 22 H 1.08995 * 109.47363 * 34.34531 * 1 2 3 23 23 H 1.09000 * 109.47389 * 154.34947 * 1 2 3 24 24 H 0.97001 * 120.00100 * 179.97438 * 6 5 3 25 25 H 1.09000 * 109.37924 * 69.39855 * 13 11 2 26 26 H 1.09009 * 109.37940 * 309.73490 * 13 11 2 27 27 H 1.08997 * 109.41347 * 191.85500 * 14 13 11 28 28 H 1.08998 * 109.40765 * 311.63759 * 14 13 11 29 29 H 1.09000 * 109.75233 * 69.50107 * 15 14 13 30 30 H 1.08999 * 109.74859 * 190.24221 * 15 14 13 31 31 H 1.07997 * 126.98396 * 359.67535 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1711 1.2196 -0.3491 5 6 1.5308 2.3445 0.4487 6 7 0.3934 2.2707 1.1068 7 14 2.3125 4.0088 0.1186 8 1 1.8155 4.5411 -1.1755 9 1 1.9546 4.9491 1.2108 10 1 3.7887 3.8591 0.0582 11 6 2.1975 -1.2687 -0.0006 12 1 3.2700 -1.0746 0.0114 13 6 1.8312 -2.0783 -1.2519 14 6 2.4015 -3.4940 -1.1452 15 6 1.6167 -4.2939 -0.0951 16 6 1.5427 -3.4690 1.1573 17 6 1.2378 -3.8010 2.4180 18 8 1.3345 -2.6662 3.1350 19 7 1.6566 -1.7228 2.4401 20 6 1.8126 -2.0789 1.2095 21 1 -0.3634 0.0779 1.0248 22 1 -0.3634 0.8484 -0.5797 23 1 -0.3634 -0.9264 -0.4448 24 1 -0.0388 3.0804 1.4207 25 1 2.2435 -1.5876 -2.1336 26 1 0.7463 -2.1313 -1.3436 27 1 2.3222 -3.9903 -2.1123 28 1 3.4497 -3.4410 -0.8512 29 1 0.6107 -4.4967 -0.4626 30 1 2.1301 -5.2328 0.1120 31 1 0.9689 -4.7805 2.7850 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259552281.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:27 Heat of formation + Delta-G solvation = 59.060032 kcal Electronic energy + Delta-G solvation = -15643.276535 eV Core-core repulsion = 13120.776888 eV Total energy + Delta-G solvation = -2522.499647 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.69958 -39.18175 -36.57158 -33.72237 -33.25542 -32.10126 -29.66903 -28.10409 -25.97538 -23.95559 -23.83579 -21.55423 -20.44632 -18.95162 -18.28139 -18.12927 -16.93681 -16.20456 -15.71995 -15.42450 -14.80850 -14.68559 -14.29684 -13.82659 -13.40773 -13.08759 -12.89989 -12.82614 -12.52816 -12.37192 -12.19981 -12.06611 -11.72576 -11.67258 -11.25855 -10.70086 -10.64668 -10.13844 -8.89062 -7.86177 -5.36015 0.86188 1.41458 1.43770 1.50642 1.53920 2.47383 2.68675 3.25559 3.31214 3.64568 3.89674 4.01988 4.15915 4.38789 4.43995 4.49524 4.66092 4.75175 4.82958 4.96938 5.06324 5.16480 5.18054 5.24969 5.34066 5.48718 5.51094 5.57934 5.62856 6.26348 7.08552 7.66875 7.80977 8.24459 9.17190 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.037799 B = 0.009445 C = 0.008321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.578510 B = 2963.775898 C = 3364.307002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.190 3.810 2 N -0.599 5.599 3 C -0.268 4.268 4 H 0.073 0.927 5 C -0.054 4.054 6 N -0.938 5.938 7 Si 0.975 3.025 8 H -0.280 1.280 9 H -0.297 1.297 10 H -0.268 1.268 11 C 0.236 3.764 12 H 0.065 0.935 13 C -0.118 4.118 14 C -0.110 4.110 15 C -0.035 4.035 16 C -0.212 4.212 17 C -0.061 4.061 18 O 0.064 5.936 19 N -0.385 5.385 20 C -0.010 4.010 21 H -0.012 1.012 22 H 0.020 0.980 23 H 0.026 0.974 24 H 0.247 0.753 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.099 0.901 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.109 0.891 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.269 -16.306 -3.615 16.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.321 5.321 3 C -0.398 4.398 4 H 0.091 0.909 5 C -0.249 4.249 6 N -0.584 5.584 7 Si 0.802 3.198 8 H -0.207 1.207 9 H -0.224 1.224 10 H -0.192 1.192 11 C 0.128 3.872 12 H 0.083 0.917 13 C -0.157 4.157 14 C -0.147 4.147 15 C -0.072 4.072 16 C -0.217 4.217 17 C -0.140 4.140 18 O 0.001 5.999 19 N -0.091 5.091 20 C -0.173 4.173 21 H 0.007 0.993 22 H 0.039 0.961 23 H 0.044 0.956 24 H 0.056 0.944 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.118 0.882 28 H 0.082 0.918 29 H 0.107 0.893 30 H 0.127 0.873 31 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 2.288 -14.999 -2.886 15.445 hybrid contribution 0.010 0.935 -0.108 0.941 sum 2.297 -14.065 -2.994 14.562 Atomic orbital electron populations 1.20340 0.82927 0.95561 0.96637 1.44097 1.01861 1.00835 1.85268 1.19600 0.98171 0.86261 1.35762 0.90906 1.25890 0.98600 1.02190 0.98271 1.70302 1.20166 1.27320 1.40585 0.85160 0.78380 0.79297 0.76945 1.20665 1.22372 1.19230 1.19245 0.95209 0.84076 0.88667 0.91676 1.21957 1.01242 0.96179 0.96349 1.21599 0.99487 0.93404 1.00253 1.20072 1.02036 0.96877 0.88258 1.21581 1.07673 0.93718 0.98690 1.26085 1.02952 0.93986 0.90989 1.85104 1.65104 1.13705 1.35962 1.73697 1.17431 1.10946 1.07071 1.24878 1.02799 0.95405 0.94244 0.99328 0.96129 0.95584 0.94413 0.91169 0.92477 0.88206 0.91841 0.89293 0.87263 0.72093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.30 8.28 127.77 1.06 11.36 16 2 N -0.60 -32.19 2.83 -706.25 -2.00 -34.18 16 3 C -0.27 -15.64 9.60 84.03 0.81 -14.83 16 4 H 0.07 4.09 7.82 -2.91 -0.02 4.07 16 5 C -0.05 -3.24 5.10 84.86 0.43 -2.81 16 6 N -0.94 -59.47 10.65 21.65 0.23 -59.24 16 7 Si 0.97 47.43 29.57 68.60 2.03 49.46 16 8 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 9 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 11 C 0.24 10.32 2.98 44.38 0.13 10.45 16 12 H 0.07 2.94 7.88 -2.39 -0.02 2.92 16 13 C -0.12 -3.84 5.27 30.75 0.16 -3.68 16 14 C -0.11 -2.46 5.87 30.79 0.18 -2.28 16 15 C -0.04 -0.72 6.31 29.87 0.19 -0.53 16 16 C -0.21 -6.36 6.05 -20.17 -0.12 -6.48 16 17 C -0.06 -1.61 12.28 66.83 0.82 -0.79 16 18 O 0.06 2.45 11.23 65.55 0.74 3.19 16 19 N -0.39 -18.29 12.06 -52.04 -0.63 -18.92 16 20 C -0.01 -0.42 6.25 43.80 0.27 -0.14 16 21 H -0.01 -0.72 7.41 -2.38 -0.02 -0.73 16 22 H 0.02 1.16 7.21 -2.39 -0.02 1.15 16 23 H 0.03 1.21 6.32 -2.39 -0.02 1.20 16 24 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 25 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.06 1.94 6.35 -2.38 -0.02 1.93 16 27 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.06 1.44 8.11 -2.39 -0.02 1.42 16 29 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.11 1.48 8.14 -2.39 -0.02 1.47 16 31 H 0.26 3.41 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -76.26 255.70 5.43 -70.84 By element: Atomic # 1 Polarization: -2.54 SS G_CDS: 1.12 Total: -1.42 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: 3.93 Total: -9.72 kcal Atomic # 7 Polarization: -109.94 SS G_CDS: -2.40 Total: -112.34 kcal Atomic # 8 Polarization: 2.45 SS G_CDS: 0.74 Total: 3.19 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -76.26 5.43 -70.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259552281.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.896 kcal (2) G-P(sol) polarization free energy of solvation -76.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds