Wall clock time and date at job start Mon Mar 30 2020 03:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46505 * 119.99822 * 2 1 4 4 C 1.38158 * 120.00207 * 180.02562 * 2 1 3 5 5 N 1.31050 * 125.71593 * 0.31457 * 4 2 1 6 6 C 1.34720 * 108.60825 * 180.16757 * 5 4 2 7 7 C 1.34095 * 107.79223 * 359.56349 * 6 5 4 8 8 C 1.50694 * 126.36039 * 180.24389 * 7 6 5 9 9 C 1.50704 * 115.55173 * 54.37900 * 8 7 6 10 10 H 1.08004 * 120.00009 * 266.65403 * 9 8 7 11 11 C 1.37871 * 119.99860 * 86.65809 * 9 8 7 12 12 N 1.31513 * 120.00379 * 349.46535 * 11 9 8 13 13 Si 1.86806 * 119.99852 * 169.46645 * 11 9 8 14 14 H 1.48504 * 109.46835 * 60.00326 * 13 11 9 15 15 H 1.48500 * 109.47068 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47272 * 299.99880 * 13 11 9 17 17 C 1.53003 * 117.49820 * 268.70928 * 8 7 6 18 18 C 1.53005 * 117.49901 * 200.04738 * 8 7 6 19 19 O 1.34216 * 125.71450 * 180.02562 * 4 2 1 20 20 H 1.08999 * 109.46894 * 269.99267 * 1 2 3 21 21 H 1.08995 * 109.47793 * 29.99709 * 1 2 3 22 22 H 1.09000 * 109.47116 * 149.99869 * 1 2 3 23 23 H 1.08996 * 109.47227 * 270.00452 * 3 2 1 24 24 H 1.08994 * 109.46863 * 30.00199 * 3 2 1 25 25 H 1.09006 * 109.46896 * 149.99971 * 3 2 1 26 26 H 1.08007 * 126.10665 * 179.82639 * 6 5 4 27 27 H 0.97000 * 120.00594 * 174.92397 * 12 11 9 28 28 H 1.08994 * 117.49979 * 359.97438 * 17 8 7 29 29 H 1.09002 * 117.49907 * 145.02228 * 17 8 7 30 30 H 1.09003 * 117.49836 * 214.97751 * 18 8 7 31 31 H 1.08993 * 117.49620 * 0.02562 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1558 -1.1965 -0.0005 5 7 1.6169 -2.3910 -0.0069 6 6 2.6039 -3.3079 -0.0014 7 6 3.7731 -2.6514 -0.0012 8 6 5.1463 -3.2721 -0.0010 9 6 5.4126 -4.2613 -1.1063 10 1 5.2459 -5.3152 -0.9396 11 6 5.8692 -3.8208 -2.3304 12 7 5.8762 -2.5348 -2.6058 13 14 6.4780 -5.0506 -3.5979 14 1 5.3814 -5.9913 -3.9413 15 1 6.9107 -4.3279 -4.8208 16 1 7.6252 -5.8103 -3.0393 17 6 5.8024 -3.5353 1.3559 18 6 6.3151 -2.4013 0.4645 19 8 3.4913 -1.3301 -0.0001 20 1 -0.3633 -0.0001 1.0277 21 1 -0.3634 0.8899 -0.5137 22 1 -0.3633 -0.8900 -0.5139 23 1 2.3790 1.5835 -1.0276 24 1 1.6083 2.0283 0.5138 25 1 3.1499 1.1384 0.5139 26 1 2.4763 -4.3804 -0.0018 27 1 6.2649 -2.2187 -3.4363 28 1 5.2410 -3.2592 2.2484 29 1 6.4270 -4.4238 1.4490 30 1 7.2768 -2.5443 -0.0284 31 1 6.0907 -1.3797 0.7710 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259696000.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:12 Heat of formation + Delta-G solvation = 65.800870 kcal Electronic energy + Delta-G solvation = -15209.670882 eV Core-core repulsion = 12687.463539 eV Total energy + Delta-G solvation = -2522.207342 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.01847 -36.70906 -35.95441 -33.48263 -32.05385 -28.57958 -27.93619 -25.80653 -24.48173 -21.75545 -21.16834 -20.35516 -19.19547 -17.17229 -16.33476 -15.84258 -14.99549 -14.71729 -14.41789 -14.13569 -13.55545 -13.01956 -12.44134 -12.38125 -12.15914 -11.88356 -11.63464 -11.23163 -11.00151 -10.61257 -10.35806 -10.32906 -10.07707 -9.51333 -9.41705 -8.86773 -8.58002 -8.33748 -6.65668 -6.13614 -4.24939 2.70883 2.85302 3.27486 3.32258 3.34461 3.87485 4.15824 4.36204 5.15909 5.17613 5.27280 5.41287 5.49374 5.77313 5.79455 5.89502 5.94311 6.10700 6.27482 6.34518 6.44423 6.64056 6.95352 7.09341 7.13424 7.24859 7.37529 7.53930 7.76055 7.85720 8.23143 8.78301 8.94810 9.42356 10.92490 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.033350 B = 0.008631 C = 0.008164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.386048 B = 3243.211507 C = 3428.945817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.594 5.594 3 C 0.104 3.896 4 C 0.408 3.592 5 N -0.537 5.537 6 C -0.052 4.052 7 C 0.034 3.966 8 C 0.109 3.891 9 C -0.494 4.494 10 H 0.069 0.931 11 C 0.075 3.925 12 N -0.862 5.862 13 Si 0.895 3.105 14 H -0.274 1.274 15 H -0.286 1.286 16 H -0.273 1.273 17 C -0.189 4.189 18 C -0.153 4.153 19 O -0.218 6.218 20 H 0.045 0.955 21 H 0.065 0.935 22 H 0.076 0.924 23 H 0.049 0.951 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.171 0.829 27 H 0.263 0.737 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.335 5.426 4.621 8.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.325 5.325 3 C -0.039 4.039 4 C 0.112 3.888 5 N -0.277 5.277 6 C -0.188 4.188 7 C -0.020 4.020 8 C 0.108 3.892 9 C -0.531 4.531 10 H 0.087 0.913 11 C -0.131 4.131 12 N -0.496 5.496 13 Si 0.722 3.278 14 H -0.199 1.199 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.226 4.226 18 C -0.191 4.191 19 O -0.105 6.105 20 H 0.064 0.936 21 H 0.084 0.916 22 H 0.095 0.905 23 H 0.067 0.933 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.188 0.812 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.975 5.572 4.432 9.294 hybrid contribution 1.025 -0.272 -0.904 1.393 sum -4.950 5.300 3.528 8.065 Atomic orbital electron populations 1.21450 0.76746 1.02770 1.01050 1.44661 1.04674 0.99775 1.83398 1.21559 0.96952 0.83920 1.01471 1.21342 0.78664 0.88219 1.00619 1.70566 1.32923 0.96694 1.27507 1.22346 0.87181 0.99345 1.09913 1.23597 0.98757 0.76722 1.02935 1.17033 0.82764 0.96453 0.92967 1.20327 1.45805 0.91842 0.95108 0.91277 1.25066 0.95052 0.95355 0.97662 1.70087 1.41332 1.13462 1.24737 0.86608 0.79504 0.81244 0.80469 1.19897 1.21182 1.19862 1.23079 1.04984 1.00858 0.93681 1.22577 1.00299 0.93383 1.02794 1.84407 1.23251 1.30093 1.72754 0.93630 0.91624 0.90514 0.93268 0.91269 0.91341 0.81188 0.92710 0.91307 0.89214 0.89480 0.91445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.61 10.57 59.84 0.63 2.25 16 2 N -0.59 -10.25 3.37 -191.89 -0.65 -10.90 16 3 C 0.10 1.43 10.60 59.85 0.63 2.07 16 4 C 0.41 9.07 8.43 -87.00 -0.73 8.33 16 5 N -0.54 -12.46 10.62 -14.45 -0.15 -12.62 16 6 C -0.05 -1.26 11.69 -17.74 -0.21 -1.46 16 7 C 0.03 0.85 6.45 -35.77 -0.23 0.62 16 8 C 0.11 2.77 1.81 -156.81 -0.28 2.48 16 9 C -0.49 -13.36 8.74 -34.44 -0.30 -13.66 16 10 H 0.07 1.81 7.84 -52.48 -0.41 1.40 16 11 C 0.07 2.04 5.35 -17.82 -0.10 1.94 16 12 N -0.86 -24.68 12.99 55.43 0.72 -23.96 16 13 Si 0.90 20.83 29.55 -169.99 -5.02 15.81 16 14 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 17 C -0.19 -4.10 9.94 -26.69 -0.27 -4.36 16 18 C -0.15 -3.63 9.43 -26.69 -0.25 -3.88 16 19 O -0.22 -5.40 10.14 3.69 0.04 -5.36 16 20 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.07 0.65 8.07 -51.93 -0.42 0.24 16 22 H 0.08 1.13 7.64 -51.93 -0.40 0.73 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.07 0.69 8.07 -51.93 -0.42 0.27 16 25 H 0.07 1.01 7.71 -51.93 -0.40 0.61 16 26 H 0.17 3.78 8.06 -52.48 -0.42 3.36 16 27 H 0.26 7.18 8.32 -40.82 -0.34 6.84 16 28 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 30 H 0.09 2.12 8.14 -51.93 -0.42 1.69 16 31 H 0.07 1.56 8.12 -51.93 -0.42 1.14 16 LS Contribution 275.53 15.07 4.15 4.15 Total: -1.00 -31.38 275.53 -6.15 -37.53 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -4.14 Total: 1.04 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -1.10 Total: -5.69 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: -0.08 Total: -47.48 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: 0.04 Total: -5.36 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.38 -6.15 -37.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259696000.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.331 kcal (2) G-P(sol) polarization free energy of solvation -31.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds