Wall clock time and date at job start Mon Mar 30 2020 03:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.40295 * 125.99818 * 2 1 4 4 C 1.30142 * 108.26773 * 179.97438 * 3 2 1 5 5 C 1.40437 * 108.28342 * 0.09690 * 4 3 2 6 6 C 1.35194 * 107.97395 * 359.87739 * 5 4 3 7 7 O 1.35761 * 126.25934 * 180.11163 * 6 5 4 8 8 C 1.50856 * 123.67723 * 179.83193 * 5 4 3 9 9 C 1.53395 * 108.19116 * 343.40695 * 8 5 4 10 10 C 1.53019 * 109.71932 * 50.51724 * 9 8 5 11 11 C 1.50957 * 128.25942 * 180.13324 * 4 3 2 12 12 H 1.08999 * 109.75265 * 282.94063 * 11 4 3 13 13 C 1.50701 * 109.72037 * 43.56353 * 11 4 3 14 14 H 1.08001 * 120.00383 * 113.21258 * 13 11 4 15 15 C 1.37885 * 119.99733 * 292.94312 * 13 11 4 16 16 N 1.31512 * 119.99662 * 350.75419 * 15 13 11 17 17 Si 1.86801 * 119.99925 * 170.75453 * 15 13 11 18 18 H 1.48497 * 109.47094 * 94.99211 * 17 15 13 19 19 H 1.48494 * 109.47047 * 214.99311 * 17 15 13 20 20 H 1.48497 * 109.47210 * 334.99380 * 17 15 13 21 21 H 1.09003 * 109.46768 * 269.94923 * 1 2 3 22 22 H 1.08988 * 109.47392 * 29.95393 * 1 2 3 23 23 H 1.09005 * 109.46757 * 149.96026 * 1 2 3 24 24 H 0.96693 * 114.00048 * 90.00584 * 7 6 5 25 25 H 1.08998 * 109.72048 * 223.73044 * 8 5 4 26 26 H 1.09003 * 109.71982 * 103.08075 * 8 5 4 27 27 H 1.08996 * 109.42778 * 290.43579 * 9 8 5 28 28 H 1.09009 * 109.42637 * 170.59066 * 9 8 5 29 29 H 1.08996 * 109.42636 * 168.22302 * 10 9 8 30 30 H 1.09005 * 109.37784 * 48.36536 * 10 9 8 31 31 H 0.97003 * 119.99836 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2897 1.1350 0.0000 4 6 3.5293 0.7387 0.0006 5 6 3.5428 -0.6656 -0.0013 6 6 2.2609 -1.0952 -0.0003 7 8 1.8474 -2.3883 0.0007 8 6 4.8062 -1.4900 -0.0050 9 6 5.9696 -0.5815 -0.4224 10 6 5.9577 0.6939 0.4231 11 6 4.7806 1.5831 0.0035 12 1 4.9585 1.9815 -0.9953 13 6 4.6261 2.7177 0.9832 14 1 5.2396 2.7516 1.8715 15 6 3.7054 3.7155 0.7428 16 7 3.0932 3.7792 -0.4194 17 14 3.3276 4.9768 2.0679 18 1 4.1641 6.1850 1.8542 19 1 1.8920 5.3505 2.0007 20 1 3.6264 4.3977 3.4022 21 1 -0.3633 -0.0009 1.0277 22 1 -0.3633 0.8903 -0.5131 23 1 -0.3633 -0.8897 -0.5145 24 1 1.7281 -2.7624 0.8843 25 1 4.7076 -2.3109 -0.7152 26 1 4.9894 -1.8867 0.9936 27 1 5.8654 -0.3196 -1.4753 28 1 6.9124 -1.1075 -0.2719 29 1 6.8919 1.2356 0.2752 30 1 5.8549 0.4292 1.4755 31 1 2.4457 4.4814 -0.5887 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259737436.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:13 Heat of formation + Delta-G solvation = 27.690127 kcal Electronic energy + Delta-G solvation = -15587.700403 eV Core-core repulsion = 13063.840455 eV Total energy + Delta-G solvation = -2523.859948 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.56449 -36.87957 -35.76106 -32.80532 -31.65084 -30.03909 -27.30860 -26.25343 -24.48185 -21.73937 -20.92052 -20.15332 -17.98266 -17.42946 -16.02693 -15.63302 -14.73941 -14.41642 -13.96322 -13.82768 -13.03316 -12.76638 -12.47835 -12.21133 -12.01508 -11.78391 -11.47375 -10.91608 -10.81056 -10.80253 -10.38493 -10.08129 -9.80753 -9.48298 -9.37034 -8.67141 -8.28674 -7.84993 -7.34635 -5.89445 -3.91988 2.56626 3.26157 3.37439 3.44701 3.48529 3.96873 4.55693 4.62084 5.17672 5.46672 5.60703 5.64121 5.74536 5.79730 5.85189 6.20432 6.38174 6.44828 6.50609 6.60022 6.63168 6.81080 6.96348 7.07138 7.21278 7.33786 7.78451 7.85848 8.06733 8.23144 8.43110 8.96914 9.15690 9.71950 11.19312 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.026072 B = 0.012430 C = 0.009115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.702327 B = 2252.052061 C = 3071.257370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.417 5.417 3 N -0.213 5.213 4 C 0.132 3.868 5 C -0.258 4.258 6 C 0.224 3.776 7 O -0.474 6.474 8 C -0.026 4.026 9 C -0.118 4.118 10 C -0.104 4.104 11 C 0.115 3.885 12 H 0.053 0.947 13 C -0.530 4.530 14 H 0.057 0.943 15 C 0.080 3.920 16 N -0.854 5.854 17 Si 0.883 3.117 18 H -0.283 1.283 19 H -0.288 1.288 20 H -0.275 1.275 21 H 0.059 0.941 22 H 0.083 0.917 23 H 0.073 0.927 24 H 0.383 0.617 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.557 -9.780 1.389 10.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.209 5.209 3 N -0.033 5.033 4 C -0.038 4.038 5 C -0.271 4.271 6 C 0.058 3.942 7 O -0.276 6.276 8 C -0.065 4.065 9 C -0.155 4.155 10 C -0.142 4.142 11 C 0.095 3.905 12 H 0.070 0.930 13 C -0.568 4.568 14 H 0.076 0.924 15 C -0.126 4.126 16 N -0.489 5.489 17 Si 0.711 3.289 18 H -0.209 1.209 19 H -0.213 1.213 20 H -0.200 1.200 21 H 0.077 0.923 22 H 0.102 0.898 23 H 0.092 0.908 24 H 0.237 0.763 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.658 -8.733 0.648 9.151 hybrid contribution -0.287 -0.193 1.273 1.319 sum -2.945 -8.926 1.920 9.593 Atomic orbital electron populations 1.21492 0.76491 1.03354 1.01833 1.49549 1.06221 1.04463 1.60696 1.77959 1.01959 1.00706 1.22694 1.23269 0.95043 0.91237 0.94291 1.19926 0.92579 0.95709 1.18840 1.18202 0.89260 0.79845 1.06910 1.84817 1.89204 1.20617 1.32973 1.19802 0.91008 0.95822 0.99824 1.21614 0.96462 0.96945 1.00500 1.21605 0.99232 0.94611 0.98769 1.17482 0.83810 0.90565 0.98619 0.92967 1.20875 1.22125 1.06420 1.07360 0.92448 1.24874 0.95816 0.97063 0.94813 1.69956 1.25863 1.32074 1.21011 0.86736 0.77528 0.81700 0.82911 1.20925 1.21344 1.20030 0.92279 0.89844 0.90842 0.76311 0.92551 0.92570 0.92327 0.93026 0.92529 0.92916 0.93155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.78 11.42 59.85 0.68 2.46 16 2 N -0.42 -8.98 4.03 -68.41 -0.28 -9.25 16 3 N -0.21 -5.58 10.82 33.74 0.37 -5.22 16 4 C 0.13 3.34 6.29 -82.35 -0.52 2.82 16 5 C -0.26 -5.58 5.91 -104.80 -0.62 -6.19 16 6 C 0.22 4.52 7.94 -17.07 -0.14 4.38 16 7 O -0.47 -7.51 13.58 -18.99 -0.26 -7.76 16 8 C -0.03 -0.47 6.28 -27.60 -0.17 -0.64 16 9 C -0.12 -2.09 5.87 -26.52 -0.16 -2.24 16 10 C -0.10 -2.16 5.12 -26.53 -0.14 -2.29 16 11 C 0.12 2.96 2.33 -92.61 -0.22 2.74 16 12 H 0.05 1.46 8.07 -51.93 -0.42 1.04 16 13 C -0.53 -14.79 8.45 -34.44 -0.29 -15.08 16 14 H 0.06 1.58 7.77 -52.49 -0.41 1.17 16 15 C 0.08 2.27 4.92 -17.82 -0.09 2.18 16 16 N -0.85 -25.14 11.99 55.43 0.66 -24.47 16 17 Si 0.88 21.90 29.55 -169.99 -5.02 16.88 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.08 1.34 8.14 -51.94 -0.42 0.92 16 23 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.38 4.09 9.06 45.56 0.41 4.50 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.06 1.07 8.10 -51.93 -0.42 0.65 16 28 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.05 1.09 8.08 -51.93 -0.42 0.67 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 LS Contribution 262.21 15.07 3.95 3.95 Total: -1.00 -32.87 262.21 -5.57 -38.44 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -3.35 Total: -0.69 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -1.65 Total: -11.88 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.75 Total: -38.94 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: -0.26 Total: -7.76 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.87 -5.57 -38.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259737436.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.130 kcal (2) G-P(sol) polarization free energy of solvation -32.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds