Wall clock time and date at job start Mon Mar 30 2020 03:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.40295 * 125.99818 * 2 1 4 4 C 1.30142 * 108.26773 * 179.97438 * 3 2 1 5 5 C 1.40437 * 108.28342 * 0.09690 * 4 3 2 6 6 C 1.35194 * 107.97395 * 359.87739 * 5 4 3 7 7 O 1.35761 * 126.25934 * 180.11163 * 6 5 4 8 8 C 1.50856 * 123.67723 * 179.83193 * 5 4 3 9 9 C 1.53395 * 108.19116 * 343.40695 * 8 5 4 10 10 C 1.53019 * 109.71932 * 50.51724 * 9 8 5 11 11 C 1.50957 * 128.25942 * 180.13324 * 4 3 2 12 12 H 1.08999 * 109.75265 * 282.94063 * 11 4 3 13 13 C 1.50701 * 109.72037 * 43.56353 * 11 4 3 14 14 H 1.08001 * 120.00383 * 113.21258 * 13 11 4 15 15 C 1.37885 * 119.99733 * 292.94312 * 13 11 4 16 16 N 1.31512 * 119.99662 * 350.75419 * 15 13 11 17 17 Si 1.86801 * 119.99925 * 170.75453 * 15 13 11 18 18 H 1.48497 * 109.47094 * 94.99211 * 17 15 13 19 19 H 1.48494 * 109.47047 * 214.99311 * 17 15 13 20 20 H 1.48497 * 109.47210 * 334.99380 * 17 15 13 21 21 H 1.09003 * 109.46768 * 269.94923 * 1 2 3 22 22 H 1.08988 * 109.47392 * 29.95393 * 1 2 3 23 23 H 1.09005 * 109.46757 * 149.96026 * 1 2 3 24 24 H 0.96693 * 114.00048 * 90.00584 * 7 6 5 25 25 H 1.08998 * 109.72048 * 223.73044 * 8 5 4 26 26 H 1.09003 * 109.71982 * 103.08075 * 8 5 4 27 27 H 1.08996 * 109.42778 * 290.43579 * 9 8 5 28 28 H 1.09009 * 109.42637 * 170.59066 * 9 8 5 29 29 H 1.08996 * 109.42636 * 168.22302 * 10 9 8 30 30 H 1.09005 * 109.37784 * 48.36536 * 10 9 8 31 31 H 0.97003 * 119.99836 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2897 1.1350 0.0000 4 6 3.5293 0.7387 0.0006 5 6 3.5428 -0.6656 -0.0013 6 6 2.2609 -1.0952 -0.0003 7 8 1.8474 -2.3883 0.0007 8 6 4.8062 -1.4900 -0.0050 9 6 5.9696 -0.5815 -0.4224 10 6 5.9577 0.6939 0.4231 11 6 4.7806 1.5831 0.0035 12 1 4.9585 1.9815 -0.9953 13 6 4.6261 2.7177 0.9832 14 1 5.2396 2.7516 1.8715 15 6 3.7054 3.7155 0.7428 16 7 3.0932 3.7792 -0.4194 17 14 3.3276 4.9768 2.0679 18 1 4.1641 6.1850 1.8542 19 1 1.8920 5.3505 2.0007 20 1 3.6264 4.3977 3.4022 21 1 -0.3633 -0.0009 1.0277 22 1 -0.3633 0.8903 -0.5131 23 1 -0.3633 -0.8897 -0.5145 24 1 1.7281 -2.7624 0.8843 25 1 4.7076 -2.3109 -0.7152 26 1 4.9894 -1.8867 0.9936 27 1 5.8654 -0.3196 -1.4753 28 1 6.9124 -1.1075 -0.2719 29 1 6.8919 1.2356 0.2752 30 1 5.8549 0.4292 1.4755 31 1 2.4457 4.4814 -0.5887 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259737436.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:13 Heat of formation + Delta-G solvation = 3.415947 kcal Electronic energy + Delta-G solvation = -15588.753011 eV Core-core repulsion = 13063.840455 eV Total energy + Delta-G solvation = -2524.912556 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.18455 -38.31987 -37.32057 -34.77382 -33.16502 -31.83843 -29.01863 -27.72795 -26.40311 -23.40137 -22.53151 -21.69947 -19.62760 -19.01553 -18.01152 -17.12405 -16.49647 -16.21539 -15.46064 -15.22713 -14.53868 -14.43452 -14.29987 -13.69200 -13.52413 -13.31934 -13.10889 -12.76308 -12.58169 -12.48048 -12.12331 -11.72139 -11.48814 -11.36515 -11.08008 -10.42878 -10.40246 -9.63021 -8.93034 -8.03432 -6.11653 1.04590 1.39191 1.41545 1.50857 1.76625 2.17419 2.49768 3.21945 3.37071 3.77116 4.25336 4.33558 4.35386 4.40518 4.61381 4.65012 4.87876 4.89536 5.00936 5.07662 5.11557 5.30523 5.39113 5.57082 5.62222 5.75197 5.90811 5.99837 6.14852 6.36765 6.86877 6.93453 7.34338 7.55064 9.04780 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.026072 B = 0.012430 C = 0.009115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.702327 B = 2252.052061 C = 3071.257370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.422 5.422 3 N -0.268 5.268 4 C 0.104 3.896 5 C -0.279 4.279 6 C 0.242 3.758 7 O -0.463 6.463 8 C -0.021 4.021 9 C -0.111 4.111 10 C -0.097 4.097 11 C 0.108 3.892 12 H 0.012 0.988 13 C -0.545 4.545 14 H 0.055 0.945 15 C 0.034 3.966 16 N -0.884 5.884 17 Si 0.941 3.059 18 H -0.273 1.273 19 H -0.290 1.290 20 H -0.271 1.271 21 H 0.080 0.920 22 H 0.075 0.925 23 H 0.105 0.895 24 H 0.411 0.589 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.046 0.954 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.695 -11.851 2.344 12.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.215 5.215 3 N -0.090 5.090 4 C -0.065 4.065 5 C -0.292 4.292 6 C 0.075 3.925 7 O -0.269 6.269 8 C -0.059 4.059 9 C -0.149 4.149 10 C -0.135 4.135 11 C 0.088 3.912 12 H 0.030 0.970 13 C -0.583 4.583 14 H 0.073 0.927 15 C -0.168 4.168 16 N -0.520 5.520 17 Si 0.767 3.233 18 H -0.199 1.199 19 H -0.216 1.216 20 H -0.196 1.196 21 H 0.098 0.902 22 H 0.093 0.907 23 H 0.123 0.877 24 H 0.270 0.730 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.789 -10.824 1.627 11.295 hybrid contribution -0.334 0.371 0.959 1.081 sum -3.123 -10.452 2.586 11.211 Atomic orbital electron populations 1.21844 0.73852 1.04531 1.03607 1.49799 1.07782 1.03949 1.59973 1.77791 1.03128 1.03584 1.24538 1.23187 0.94579 0.93185 0.95523 1.20317 0.94830 0.94446 1.19614 1.18180 0.88650 0.81056 1.04642 1.84771 1.88758 1.18003 1.35340 1.19886 0.88967 0.95578 1.01493 1.21570 0.98617 0.95705 0.98983 1.21502 0.97283 0.95514 0.99177 1.17431 0.86539 0.91309 0.95953 0.96996 1.21235 1.21969 1.07455 1.07651 0.92711 1.25566 0.95785 0.98958 0.96509 1.70096 1.26469 1.32758 1.22659 0.85820 0.77109 0.79766 0.80558 1.19876 1.21575 1.19575 0.90160 0.90655 0.87683 0.73016 0.90624 0.90584 0.93539 0.89139 0.92005 0.92954 0.93577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.10 11.42 127.77 1.46 4.56 16 2 N -0.42 -17.72 4.03 -481.54 -1.94 -19.67 16 3 N -0.27 -14.33 10.82 -47.15 -0.51 -14.84 16 4 C 0.10 5.36 6.29 43.43 0.27 5.63 16 5 C -0.28 -11.72 5.91 -19.98 -0.12 -11.84 16 6 C 0.24 9.22 7.94 83.44 0.66 9.88 16 7 O -0.46 -12.78 13.58 -90.88 -1.23 -14.02 16 8 C -0.02 -0.69 6.28 30.03 0.19 -0.50 16 9 C -0.11 -3.72 5.87 30.73 0.18 -3.54 16 10 C -0.10 -3.98 5.12 30.72 0.16 -3.82 16 11 C 0.11 5.70 2.33 -12.08 -0.03 5.67 16 12 H 0.01 0.72 8.07 -2.39 -0.02 0.70 16 13 C -0.55 -31.25 8.45 25.60 0.22 -31.03 16 14 H 0.05 3.06 7.77 -2.91 -0.02 3.04 16 15 C 0.03 2.00 4.92 84.66 0.42 2.41 16 16 N -0.88 -53.92 11.99 21.45 0.26 -53.66 16 17 Si 0.94 45.76 29.55 68.60 2.03 47.79 16 18 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 20 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 21 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 22 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 23 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 24 H 0.41 6.81 9.06 -74.06 -0.67 6.14 16 25 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.05 1.65 8.10 -2.39 -0.02 1.63 16 28 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 29 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.05 2.13 8.08 -2.38 -0.02 2.11 16 31 H 0.26 14.99 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -73.22 262.21 2.47 -70.75 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: 0.46 Total: 6.22 kcal Atomic # 6 Polarization: -25.98 SS G_CDS: 3.41 Total: -22.58 kcal Atomic # 7 Polarization: -85.97 SS G_CDS: -2.19 Total: -88.17 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -1.23 Total: -14.02 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -73.22 2.47 -70.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259737436.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.169 kcal (2) G-P(sol) polarization free energy of solvation -73.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds