Wall clock time and date at job start Mon Mar 30 2020 03:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40290 * 125.99964 * 2 1 4 4 C 1.30147 * 108.26988 * 180.02562 * 3 2 1 5 5 C 1.40437 * 108.27639 * 359.70611 * 4 3 2 6 6 C 1.35184 * 107.97822 * 0.47903 * 5 4 3 7 7 O 1.35764 * 126.26236 * 179.79723 * 6 5 4 8 8 C 1.50868 * 123.66933 * 179.97438 * 5 4 3 9 9 C 1.53393 * 108.13950 * 16.91753 * 8 5 4 10 10 C 1.53028 * 109.71049 * 309.30400 * 9 8 5 11 11 C 1.50953 * 128.25710 * 179.81929 * 4 3 2 12 12 H 1.09000 * 109.71890 * 76.99007 * 11 4 3 13 13 C 1.50700 * 109.71816 * 316.39237 * 11 4 3 14 14 H 1.07998 * 120.00225 * 240.00799 * 13 11 4 15 15 C 1.37882 * 119.99822 * 59.99304 * 13 11 4 16 16 N 1.31514 * 120.00275 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99820 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47247 * 60.00081 * 17 15 13 19 19 H 1.48500 * 109.47032 * 180.02562 * 17 15 13 20 20 H 1.48509 * 109.46860 * 300.00191 * 17 15 13 21 21 H 1.08998 * 109.47001 * 269.99450 * 1 2 3 22 22 H 1.08998 * 109.47414 * 30.00175 * 1 2 3 23 23 H 1.09002 * 109.46933 * 150.00451 * 1 2 3 24 24 H 0.96696 * 114.00165 * 269.71483 * 7 6 5 25 25 H 1.09000 * 109.90317 * 257.16891 * 8 5 4 26 26 H 1.08999 * 109.58803 * 136.48491 * 8 5 4 27 27 H 1.09000 * 109.43197 * 189.22627 * 9 8 5 28 28 H 1.09006 * 109.42941 * 69.37415 * 9 8 5 29 29 H 1.09002 * 109.42320 * 311.63117 * 10 9 8 30 30 H 1.09004 * 109.37610 * 191.77200 * 10 9 8 31 31 H 0.96992 * 120.00218 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2896 1.1350 0.0000 4 6 3.5293 0.7386 -0.0006 5 6 3.5427 -0.6656 0.0059 6 6 2.2609 -1.0952 -0.0004 7 8 1.8473 -2.3883 -0.0010 8 6 4.8062 -1.4900 0.0067 9 6 5.9692 -0.5811 0.4240 10 6 5.9577 0.6934 -0.4230 11 6 4.7805 1.5830 -0.0045 12 1 4.9575 1.9830 0.9939 13 6 4.6261 2.7162 -0.9859 14 1 5.3114 2.8094 -1.8154 15 6 3.6097 3.6339 -0.8249 16 7 2.7754 3.5206 0.1854 17 14 3.4179 5.0382 -2.0417 18 1 3.1914 4.4871 -3.4019 19 1 2.2587 5.8790 -1.6485 20 1 4.6514 5.8652 -2.0417 21 1 -0.3633 -0.0001 1.0277 22 1 -0.3634 0.8899 -0.5138 23 1 -0.3633 -0.8901 -0.5138 24 1 1.7280 -2.7626 -0.8846 25 1 4.9903 -1.8880 -0.9912 26 1 4.7070 -2.3101 0.7178 27 1 6.9122 -1.1071 0.2748 28 1 5.8642 -0.3179 1.4765 29 1 5.8557 0.4283 -1.4754 30 1 6.8920 1.2348 -0.2744 31 1 2.0606 4.1664 0.2988 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259737439.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:15 Heat of formation + Delta-G solvation = 37.309408 kcal Electronic energy + Delta-G solvation = -15644.076538 eV Core-core repulsion = 13120.633713 eV Total energy + Delta-G solvation = -2523.442825 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.44747 -36.81115 -35.69102 -32.83325 -31.54716 -29.95188 -27.24669 -26.16887 -24.44733 -21.68083 -20.86046 -20.08088 -17.91473 -17.37953 -15.96774 -15.52975 -14.68908 -14.40551 -13.93451 -13.71721 -12.96775 -12.76050 -12.41067 -12.16836 -11.96942 -11.71707 -11.41207 -10.90997 -10.76777 -10.75171 -10.40412 -10.06861 -9.80923 -9.43372 -9.32841 -8.55113 -8.25713 -7.73925 -7.24625 -5.83647 -3.91423 2.68662 3.37533 3.40084 3.43001 3.45463 4.08264 4.55007 4.69290 5.24925 5.47547 5.65762 5.73377 5.77937 5.82188 5.91700 6.25361 6.40569 6.50546 6.54064 6.64470 6.70311 6.82311 7.01659 7.09801 7.28080 7.37615 7.75616 7.90598 8.12235 8.34106 8.43368 9.02192 9.24243 9.71195 11.20247 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.026467 B = 0.012583 C = 0.009106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.651098 B = 2224.663980 C = 3074.027440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.423 5.423 3 N -0.178 5.178 4 C 0.122 3.878 5 C -0.259 4.259 6 C 0.217 3.783 7 O -0.476 6.476 8 C -0.026 4.026 9 C -0.117 4.117 10 C -0.104 4.104 11 C 0.118 3.882 12 H 0.043 0.957 13 C -0.531 4.531 14 H 0.057 0.943 15 C 0.071 3.929 16 N -0.839 5.839 17 Si 0.887 3.113 18 H -0.280 1.280 19 H -0.289 1.289 20 H -0.278 1.278 21 H 0.059 0.941 22 H 0.080 0.920 23 H 0.066 0.934 24 H 0.380 0.620 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.127 -8.972 -1.142 9.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.215 5.215 3 N 0.003 4.997 4 C -0.048 4.048 5 C -0.272 4.272 6 C 0.051 3.949 7 O -0.278 6.278 8 C -0.064 4.064 9 C -0.155 4.155 10 C -0.142 4.142 11 C 0.097 3.903 12 H 0.061 0.939 13 C -0.569 4.569 14 H 0.076 0.924 15 C -0.135 4.135 16 N -0.474 5.474 17 Si 0.715 3.285 18 H -0.206 1.206 19 H -0.215 1.215 20 H -0.204 1.204 21 H 0.078 0.922 22 H 0.099 0.901 23 H 0.085 0.915 24 H 0.234 0.766 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.263 -7.936 -0.414 8.263 hybrid contribution -0.151 -0.155 -1.221 1.240 sum -2.414 -8.091 -1.635 8.600 Atomic orbital electron populations 1.21410 0.76898 1.02564 1.01936 1.50005 1.06268 1.04859 1.60333 1.78539 1.01719 0.98664 1.20813 1.23202 0.95061 0.90975 0.95595 1.19872 0.92473 0.95735 1.19100 1.18253 0.89424 0.79827 1.07369 1.84829 1.89240 1.20880 1.32804 1.19789 0.91109 0.95797 0.99710 1.21605 0.96476 0.96950 1.00425 1.21607 0.99102 0.94673 0.98845 1.17441 0.84199 0.90677 0.97940 0.93893 1.20891 1.14809 1.09489 1.11741 0.92436 1.24955 0.95677 0.97510 0.95390 1.69921 1.15238 1.33888 1.28336 0.86763 0.77377 0.82551 0.81832 1.20600 1.21493 1.20350 0.92206 0.90088 0.91544 0.76557 0.92668 0.92678 0.93111 0.92393 0.92835 0.92709 0.93084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.91 11.42 59.85 0.68 2.59 16 2 N -0.42 -9.31 4.03 -68.41 -0.28 -9.59 16 3 N -0.18 -4.71 9.57 33.74 0.32 -4.39 16 4 C 0.12 3.13 6.25 -82.35 -0.51 2.62 16 5 C -0.26 -5.71 5.91 -104.80 -0.62 -6.33 16 6 C 0.22 4.50 7.94 -17.07 -0.14 4.36 16 7 O -0.48 -7.81 13.58 -19.00 -0.26 -8.07 16 8 C -0.03 -0.47 6.28 -27.60 -0.17 -0.64 16 9 C -0.12 -2.10 5.86 -26.51 -0.16 -2.25 16 10 C -0.10 -2.17 5.12 -26.52 -0.14 -2.30 16 11 C 0.12 3.01 2.49 -92.61 -0.23 2.78 16 12 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 13 C -0.53 -14.78 8.56 -34.44 -0.29 -15.07 16 14 H 0.06 1.57 7.75 -52.49 -0.41 1.16 16 15 C 0.07 1.98 5.12 -17.82 -0.09 1.89 16 16 N -0.84 -24.44 10.55 55.43 0.58 -23.86 16 17 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 22 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 23 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 24 H 0.38 4.28 9.06 45.56 0.41 4.69 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 1.06 8.10 -51.93 -0.42 0.64 16 29 H 0.05 1.12 8.08 -51.93 -0.42 0.70 16 30 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 259.97 15.07 3.92 3.92 Total: -1.00 -32.52 259.97 -5.75 -38.27 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -3.35 Total: -0.60 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -1.67 Total: -12.35 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.63 Total: -37.84 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -0.26 Total: -8.07 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -32.52 -5.75 -38.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259737439.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.576 kcal (2) G-P(sol) polarization free energy of solvation -32.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds