Wall clock time and date at job start Mon Mar 30 2020 03:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40290 * 125.99964 * 2 1 4 4 C 1.30147 * 108.26988 * 180.02562 * 3 2 1 5 5 C 1.40437 * 108.27639 * 359.70611 * 4 3 2 6 6 C 1.35184 * 107.97822 * 0.47903 * 5 4 3 7 7 O 1.35764 * 126.26236 * 179.79723 * 6 5 4 8 8 C 1.50868 * 123.66933 * 179.97438 * 5 4 3 9 9 C 1.53393 * 108.13950 * 16.91753 * 8 5 4 10 10 C 1.53028 * 109.71049 * 309.30400 * 9 8 5 11 11 C 1.50953 * 128.25710 * 179.81929 * 4 3 2 12 12 H 1.09000 * 109.71890 * 76.99007 * 11 4 3 13 13 C 1.50700 * 109.71816 * 316.39237 * 11 4 3 14 14 H 1.07998 * 120.00225 * 240.00799 * 13 11 4 15 15 C 1.37882 * 119.99822 * 59.99304 * 13 11 4 16 16 N 1.31514 * 120.00275 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99820 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47247 * 60.00081 * 17 15 13 19 19 H 1.48500 * 109.47032 * 180.02562 * 17 15 13 20 20 H 1.48509 * 109.46860 * 300.00191 * 17 15 13 21 21 H 1.08998 * 109.47001 * 269.99450 * 1 2 3 22 22 H 1.08998 * 109.47414 * 30.00175 * 1 2 3 23 23 H 1.09002 * 109.46933 * 150.00451 * 1 2 3 24 24 H 0.96696 * 114.00165 * 269.71483 * 7 6 5 25 25 H 1.09000 * 109.90317 * 257.16891 * 8 5 4 26 26 H 1.08999 * 109.58803 * 136.48491 * 8 5 4 27 27 H 1.09000 * 109.43197 * 189.22627 * 9 8 5 28 28 H 1.09006 * 109.42941 * 69.37415 * 9 8 5 29 29 H 1.09002 * 109.42320 * 311.63117 * 10 9 8 30 30 H 1.09004 * 109.37610 * 191.77200 * 10 9 8 31 31 H 0.96992 * 120.00218 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2896 1.1350 0.0000 4 6 3.5293 0.7386 -0.0006 5 6 3.5427 -0.6656 0.0059 6 6 2.2609 -1.0952 -0.0004 7 8 1.8473 -2.3883 -0.0010 8 6 4.8062 -1.4900 0.0067 9 6 5.9692 -0.5811 0.4240 10 6 5.9577 0.6934 -0.4230 11 6 4.7805 1.5830 -0.0045 12 1 4.9575 1.9830 0.9939 13 6 4.6261 2.7162 -0.9859 14 1 5.3114 2.8094 -1.8154 15 6 3.6097 3.6339 -0.8249 16 7 2.7754 3.5206 0.1854 17 14 3.4179 5.0382 -2.0417 18 1 3.1914 4.4871 -3.4019 19 1 2.2587 5.8790 -1.6485 20 1 4.6514 5.8652 -2.0417 21 1 -0.3633 -0.0001 1.0277 22 1 -0.3634 0.8899 -0.5138 23 1 -0.3633 -0.8901 -0.5138 24 1 1.7280 -2.7626 -0.8846 25 1 4.9903 -1.8880 -0.9912 26 1 4.7070 -2.3101 0.7178 27 1 6.9122 -1.1071 0.2748 28 1 5.8642 -0.3179 1.4765 29 1 5.8557 0.4283 -1.4754 30 1 6.8920 1.2348 -0.2744 31 1 2.0606 4.1664 0.2988 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259737439.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:14 Heat of formation + Delta-G solvation = 13.632865 kcal Electronic energy + Delta-G solvation = -15645.103230 eV Core-core repulsion = 13120.633713 eV Total energy + Delta-G solvation = -2524.469517 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.10011 -38.29150 -37.27057 -34.78540 -33.09539 -31.76300 -28.97811 -27.67679 -26.36280 -23.36293 -22.48953 -21.65954 -19.58292 -18.98555 -17.94526 -17.06656 -16.49280 -16.16745 -15.44928 -15.15768 -14.53064 -14.43986 -14.19812 -13.68954 -13.47314 -13.28291 -13.06966 -12.75266 -12.52205 -12.47415 -12.11310 -11.70603 -11.50175 -11.33233 -11.02899 -10.39476 -10.28718 -9.53398 -8.86613 -7.94839 -6.08946 1.13125 1.42227 1.43928 1.50443 1.85718 2.25833 2.51774 3.27364 3.37860 3.82293 4.26860 4.35023 4.36323 4.43170 4.63210 4.67978 4.90298 4.92391 5.03277 5.08506 5.14639 5.31286 5.39757 5.58767 5.64338 5.74230 5.92303 6.04368 6.23190 6.39029 6.89418 6.97206 7.45461 7.56805 9.07435 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.026467 B = 0.012583 C = 0.009106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.651098 B = 2224.663980 C = 3074.027440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.429 5.429 3 N -0.231 5.231 4 C 0.094 3.906 5 C -0.281 4.281 6 C 0.234 3.766 7 O -0.466 6.466 8 C -0.021 4.021 9 C -0.111 4.111 10 C -0.096 4.096 11 C 0.109 3.891 12 H 0.006 0.994 13 C -0.550 4.550 14 H 0.055 0.945 15 C 0.024 3.976 16 N -0.864 5.864 17 Si 0.946 3.054 18 H -0.279 1.279 19 H -0.288 1.288 20 H -0.268 1.268 21 H 0.069 0.931 22 H 0.075 0.925 23 H 0.106 0.894 24 H 0.409 0.591 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.131 -10.886 -1.979 11.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.222 5.222 3 N -0.052 5.052 4 C -0.075 4.075 5 C -0.293 4.293 6 C 0.066 3.934 7 O -0.271 6.271 8 C -0.059 4.059 9 C -0.148 4.148 10 C -0.134 4.134 11 C 0.089 3.911 12 H 0.024 0.976 13 C -0.589 4.589 14 H 0.074 0.926 15 C -0.179 4.179 16 N -0.499 5.499 17 Si 0.773 3.227 18 H -0.205 1.205 19 H -0.214 1.214 20 H -0.193 1.193 21 H 0.087 0.913 22 H 0.094 0.906 23 H 0.125 0.875 24 H 0.267 0.733 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.108 0.892 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.261 -9.870 -1.271 10.205 hybrid contribution -0.244 0.359 -0.938 1.034 sum -2.506 -9.511 -2.209 10.081 Atomic orbital electron populations 1.21755 0.74294 1.04329 1.03120 1.50193 1.07852 1.04415 1.59739 1.78348 1.02862 1.01423 1.22592 1.23189 0.94711 0.92901 0.96706 1.20284 0.94701 0.94567 1.19783 1.18240 0.88853 0.81027 1.05241 1.84781 1.88809 1.18317 1.35178 1.19873 0.89134 0.95578 1.01319 1.21564 0.98534 0.95732 0.98980 1.21499 0.97267 0.95535 0.99136 1.17417 0.86782 0.91427 0.95487 0.97637 1.21243 1.14807 1.10673 1.12143 0.92642 1.25667 0.95503 0.99767 0.96971 1.70109 1.15517 1.34453 1.29818 0.85818 0.77508 0.79826 0.79592 1.20464 1.21386 1.19350 0.91282 0.90583 0.87536 0.73268 0.90761 0.90826 0.89205 0.93511 0.93029 0.91964 0.93663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.35 11.42 127.77 1.46 4.81 16 2 N -0.43 -18.52 4.03 -481.54 -1.94 -20.47 16 3 N -0.23 -12.50 9.57 -47.15 -0.45 -12.95 16 4 C 0.09 4.92 6.25 43.42 0.27 5.19 16 5 C -0.28 -12.03 5.91 -19.98 -0.12 -12.15 16 6 C 0.23 9.18 7.94 83.44 0.66 9.84 16 7 O -0.47 -13.46 13.58 -90.91 -1.23 -14.69 16 8 C -0.02 -0.70 6.28 30.03 0.19 -0.51 16 9 C -0.11 -3.74 5.86 30.74 0.18 -3.56 16 10 C -0.10 -3.97 5.12 30.73 0.16 -3.81 16 11 C 0.11 5.76 2.49 -12.08 -0.03 5.73 16 12 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 13 C -0.55 -31.45 8.56 25.60 0.22 -31.23 16 14 H 0.06 3.08 7.75 -2.91 -0.02 3.06 16 15 C 0.02 1.40 5.12 84.66 0.43 1.83 16 16 N -0.86 -52.06 10.55 21.45 0.23 -51.84 16 17 Si 0.95 45.35 29.54 68.60 2.03 47.38 16 18 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 19 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 21 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 22 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 23 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 24 H 0.41 7.27 9.06 -74.06 -0.67 6.60 16 25 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.05 1.67 8.10 -2.38 -0.02 1.65 16 29 H 0.05 2.12 8.08 -2.39 -0.02 2.10 16 30 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 31 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -72.26 259.97 2.51 -69.75 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: 0.46 Total: 6.68 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: 3.42 Total: -23.86 kcal Atomic # 7 Polarization: -83.09 SS G_CDS: -2.17 Total: -85.25 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -1.23 Total: -14.69 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -72.26 2.51 -69.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259737439.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.379 kcal (2) G-P(sol) polarization free energy of solvation -72.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds