Wall clock time and date at job start Mon Mar 30 2020 02:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47042 * 2 1 4 4 H 1.08998 * 109.47177 * 304.88404 * 3 2 1 5 5 C 1.50703 * 109.47271 * 184.88513 * 3 2 1 6 6 H 1.07996 * 119.99947 * 239.99910 * 5 3 2 7 7 C 1.37873 * 119.99661 * 59.99656 * 5 3 2 8 8 N 1.31510 * 120.00447 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99642 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47284 * 90.00464 * 9 7 5 11 11 H 1.48507 * 109.47207 * 210.00282 * 9 7 5 12 12 H 1.48503 * 109.47272 * 330.00330 * 9 7 5 13 13 C 1.53001 * 109.47317 * 64.88440 * 3 2 1 14 14 C 1.50697 * 109.47337 * 185.08434 * 13 3 2 15 15 C 1.38250 * 119.96997 * 263.80435 * 14 13 3 16 16 C 1.38197 * 120.02386 * 179.72385 * 15 14 13 17 17 C 1.38463 * 119.97303 * 0.57029 * 16 15 14 18 18 F 1.35100 * 120.02236 * 179.67896 * 17 16 15 19 19 C 1.38464 * 119.94722 * 359.70678 * 17 16 15 20 20 C 1.38197 * 119.97312 * 359.97438 * 19 17 16 21 21 H 1.09001 * 109.47238 * 53.78784 * 1 2 3 22 22 H 1.09002 * 109.46721 * 173.78511 * 1 2 3 23 23 H 1.08997 * 109.47183 * 293.78506 * 1 2 3 24 24 H 1.09004 * 109.47570 * 239.99865 * 2 1 3 25 25 H 1.09005 * 109.47073 * 119.99803 * 2 1 3 26 26 H 0.96999 * 120.00283 * 179.97438 * 8 7 5 27 27 H 1.09003 * 109.46604 * 305.08114 * 13 3 2 28 28 H 1.08995 * 109.46723 * 65.07719 * 13 3 2 29 29 H 1.08000 * 119.98960 * 359.97438 * 15 14 13 30 30 H 1.07998 * 120.01418 * 180.25259 * 16 15 14 31 31 H 1.08005 * 120.01032 * 179.97438 * 19 17 16 32 32 H 1.07996 * 119.97945 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6070 1.9810 -0.8430 5 6 3.5421 1.4443 -0.1210 6 1 4.1459 1.8894 0.6560 7 6 4.1455 0.8776 -1.2236 8 7 3.4103 0.3360 -2.1699 9 14 6.0075 0.8805 -1.3739 10 1 6.5563 -0.3505 -0.7505 11 1 6.3882 0.9206 -2.8088 12 1 6.5581 2.0735 -0.6821 13 6 1.6327 2.1275 1.3061 14 6 2.0250 3.5816 1.2544 15 6 3.2161 3.9961 1.8208 16 6 3.5797 5.3284 1.7689 17 6 2.7450 6.2501 1.1598 18 9 3.0964 7.5538 1.1143 19 6 1.5496 5.8345 0.5979 20 6 1.1913 4.5007 0.6452 21 1 -0.3634 0.6071 -0.8292 22 1 -0.3633 -1.0217 -0.1113 23 1 -0.3633 0.4144 0.9403 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.8348 -0.0623 -2.9458 27 1 0.5537 2.0468 1.4375 28 1 2.1378 1.6444 2.1425 29 1 3.8646 3.2779 2.3004 30 1 4.5121 5.6514 2.2079 31 1 0.8975 6.5526 0.1229 32 1 0.2592 4.1764 0.2066 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259742895.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:32 Heat of formation + Delta-G solvation = -59.225655 kcal Electronic energy + Delta-G solvation = -14882.880767 eV Core-core repulsion = 12335.331906 eV Total energy + Delta-G solvation = -2547.548861 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.112 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.79941 -40.09730 -37.18514 -33.85162 -32.43053 -31.95041 -29.21725 -26.81764 -24.46121 -23.85121 -22.32981 -20.82780 -18.61238 -18.30045 -17.05601 -16.73522 -16.50689 -16.31245 -15.17255 -14.97561 -14.63623 -14.37737 -14.20795 -14.10010 -13.50807 -13.24184 -12.91513 -12.66102 -12.48793 -12.29240 -12.23245 -11.74369 -11.69588 -11.37266 -11.06995 -10.60255 -10.32065 -9.90897 -9.24439 -8.00525 -6.10982 0.34929 0.42771 1.40506 1.43279 1.50725 2.47101 2.78622 3.27615 3.40319 3.90373 4.03690 4.15900 4.45134 4.51777 4.59527 4.71390 4.77089 4.87571 5.06917 5.09536 5.13957 5.25814 5.28594 5.37131 5.41667 5.48976 5.64873 5.76849 5.82764 6.09112 6.10302 6.27426 6.50478 7.01404 7.55587 9.03156 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.022475 B = 0.009897 C = 0.007557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.536910 B = 2828.447173 C = 3704.313371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.118 4.118 3 C 0.056 3.944 4 H -0.003 1.003 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.011 3.989 8 N -0.918 5.918 9 Si 0.937 3.063 10 H -0.277 1.277 11 H -0.291 1.291 12 H -0.270 1.270 13 C -0.069 4.069 14 C -0.065 4.065 15 C -0.093 4.093 16 C -0.157 4.157 17 C 0.060 3.940 18 F -0.150 7.150 19 C -0.152 4.152 20 C -0.103 4.103 21 H 0.038 0.962 22 H 0.047 0.953 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.031 0.969 26 H 0.256 0.744 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.132 0.868 30 H 0.145 0.855 31 H 0.151 0.849 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.829 6.663 7.037 10.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.156 4.156 3 C 0.037 3.963 4 H 0.015 0.985 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.186 4.186 8 N -0.559 5.559 9 Si 0.764 3.236 10 H -0.203 1.203 11 H -0.217 1.217 12 H -0.194 1.194 13 C -0.106 4.106 14 C -0.065 4.065 15 C -0.111 4.111 16 C -0.175 4.175 17 C 0.041 3.959 18 F -0.129 7.129 19 C -0.171 4.171 20 C -0.121 4.121 21 H 0.057 0.943 22 H 0.066 0.934 23 H 0.080 0.920 24 H 0.076 0.924 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.149 0.851 30 H 0.163 0.837 31 H 0.169 0.831 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.792 6.631 6.873 10.275 hybrid contribution 1.293 0.015 -0.583 1.418 sum -2.499 6.646 6.290 9.486 Atomic orbital electron populations 1.21764 0.96451 1.00446 1.00914 1.21501 0.94194 0.99406 1.00537 1.18618 0.94171 0.92017 0.91451 0.98499 1.21639 0.93196 1.35545 1.04717 0.92287 1.25615 1.01152 0.95794 0.96064 1.70007 1.35839 1.40080 1.09970 0.85874 0.82439 0.78464 0.76817 1.20313 1.21736 1.19443 1.20737 1.00302 0.90256 0.99292 1.20187 0.94368 0.96398 0.95572 1.21054 0.96102 0.94771 0.99131 1.21266 1.00779 0.93211 1.02289 1.17806 0.96452 0.78014 1.03598 1.91434 1.92299 1.34088 1.95115 1.21263 0.96308 0.97445 1.02046 1.21074 1.00634 0.91867 0.98516 0.94253 0.93431 0.92029 0.92378 0.94980 0.93521 0.90821 0.91931 0.85051 0.83692 0.83126 0.84153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.97 9.51 71.98 0.68 -4.28 16 2 C -0.12 -5.32 5.24 30.59 0.16 -5.16 16 3 C 0.06 2.60 1.76 -11.54 -0.02 2.58 16 4 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 5 C -0.51 -26.68 8.01 25.60 0.20 -26.47 16 6 H 0.06 2.98 6.19 -2.91 -0.02 2.96 16 7 C 0.01 0.62 5.29 84.65 0.45 1.07 16 8 N -0.92 -52.50 11.29 21.44 0.24 -52.25 16 9 Si 0.94 43.44 29.54 68.60 2.03 45.46 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 11 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 12 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 13 C -0.07 -2.56 4.65 29.85 0.14 -2.42 16 14 C -0.07 -2.33 4.73 -19.86 -0.09 -2.42 16 15 C -0.09 -3.19 8.58 22.26 0.19 -3.00 16 16 C -0.16 -4.98 10.03 22.31 0.22 -4.75 16 17 C 0.06 1.92 7.30 22.38 0.16 2.08 16 18 F -0.15 -4.67 17.27 44.97 0.78 -3.90 16 19 C -0.15 -4.58 10.03 22.31 0.22 -4.36 16 20 C -0.10 -3.33 9.72 22.26 0.22 -3.11 16 21 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.06 1.89 6.76 -2.39 -0.02 1.88 16 24 H 0.06 3.05 5.96 -2.38 -0.01 3.03 16 25 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 26 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 27 H 0.07 2.40 6.45 -2.39 -0.02 2.38 16 28 H 0.06 2.27 8.04 -2.39 -0.02 2.25 16 29 H 0.13 4.35 7.56 -2.91 -0.02 4.33 16 30 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 31 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 32 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -57.93 270.28 6.68 -51.25 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 1.10 Total: 9.69 kcal Atomic # 6 Polarization: -52.79 SS G_CDS: 2.54 Total: -50.25 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: 0.24 Total: -52.25 kcal Atomic # 9 Polarization: -4.67 SS G_CDS: 0.78 Total: -3.90 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -57.93 6.68 -51.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259742895.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.980 kcal (2) G-P(sol) polarization free energy of solvation -57.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds