Wall clock time and date at job start Mon Mar 30 2020 03:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46492 * 120.00293 * 2 1 4 4 C 1.53005 * 109.47231 * 270.00218 * 3 2 1 5 5 C 1.50697 * 109.47086 * 179.97438 * 4 3 2 6 6 H 1.08001 * 120.00648 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99888 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99991 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00114 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47055 * 89.99701 * 9 7 5 11 11 H 1.48501 * 109.47176 * 209.99850 * 9 7 5 12 12 H 1.48501 * 109.46751 * 330.00058 * 9 7 5 13 13 C 1.34782 * 119.99694 * 180.02562 * 2 1 3 14 14 O 1.21625 * 119.99870 * 181.76242 * 13 2 1 15 15 C 1.47267 * 119.99947 * 1.75729 * 13 2 1 16 16 C 1.46689 * 126.94172 * 165.32213 * 15 13 2 17 17 C 1.34481 * 106.33138 * 180.02562 * 16 15 13 18 18 N 1.36445 * 108.86163 * 0.02562 * 17 16 15 19 19 H 0.96993 * 124.85345 * 179.97438 * 18 17 16 20 20 C 1.34663 * 110.29236 * 0.26485 * 18 17 16 21 21 H 1.08999 * 109.47178 * 264.31390 * 1 2 3 22 22 H 1.08999 * 109.46781 * 24.30868 * 1 2 3 23 23 H 1.09001 * 109.47720 * 144.30815 * 1 2 3 24 24 H 1.09000 * 109.47334 * 29.99879 * 3 2 1 25 25 H 1.08997 * 109.47192 * 150.00041 * 3 2 1 26 26 H 1.09002 * 109.47184 * 300.00149 * 4 3 2 27 27 H 1.08997 * 109.47177 * 59.99814 * 4 3 2 28 28 H 0.97000 * 119.99786 * 180.02562 * 8 7 5 29 29 H 1.08003 * 126.82997 * 0.02562 * 16 15 13 30 30 H 1.08003 * 125.56678 * 179.97438 * 17 16 15 31 31 H 1.08004 * 125.79517 * 179.73130 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4525 1.7103 -1.4425 5 6 3.2055 3.0157 -1.4425 6 1 3.4757 3.4834 -0.5072 7 6 3.5506 3.6125 -2.6366 8 7 4.2082 4.7515 -2.6366 9 14 3.0841 2.8034 -4.2543 10 1 1.7480 3.2890 -4.6834 11 1 4.0919 3.1483 -5.2890 12 1 3.0415 1.3297 -4.0765 13 6 2.1389 -1.1673 -0.0005 14 8 3.3547 -1.1676 0.0319 15 6 1.4030 -2.4423 -0.0402 16 6 1.9522 -3.7681 -0.3437 17 6 0.9235 -4.6307 -0.2653 18 7 -0.2073 -3.9401 0.0604 19 1 -1.0848 -4.3366 0.1766 20 6 0.0679 -2.6284 0.1913 21 1 -0.3633 -0.1018 1.0226 22 1 -0.3633 0.9366 -0.4230 23 1 -0.3634 -0.8346 -0.5995 24 1 1.6085 2.0283 0.5138 25 1 3.1499 1.1383 0.5138 26 1 3.0415 0.9507 -1.9564 27 1 1.5001 1.8407 -1.9563 28 1 4.4506 5.1715 -3.4766 29 1 2.9786 -4.0045 -0.5827 30 1 0.9826 -5.6959 -0.4334 31 1 -0.6440 -1.8553 0.4402 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259746063.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:46 Heat of formation + Delta-G solvation = 26.517545 kcal Electronic energy + Delta-G solvation = -14785.000924 eV Core-core repulsion = 12261.090129 eV Total energy + Delta-G solvation = -2523.910795 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.17651 -38.78495 -35.32355 -33.07072 -31.29531 -30.44540 -28.92302 -26.75483 -25.05204 -22.10852 -20.85513 -20.27598 -19.35570 -17.64844 -16.80959 -16.03225 -15.13264 -14.96840 -14.17495 -14.05224 -13.82279 -13.34138 -12.93701 -12.70708 -12.63271 -12.51410 -12.18613 -11.52712 -11.37867 -10.89864 -10.36711 -9.94107 -9.77122 -9.38792 -9.12327 -8.80825 -8.48249 -8.37649 -8.00770 -5.99419 -3.97269 1.89596 2.48166 3.14114 3.34765 3.42960 3.51001 3.59142 3.91633 4.51433 4.85994 4.93870 5.14108 5.29794 5.35298 5.45985 5.51317 5.80017 5.85950 6.05346 6.17754 6.47654 6.69230 6.75376 6.88135 6.93083 7.32549 7.36877 7.49624 7.83893 7.99239 8.56372 8.80739 9.04651 9.63264 11.13887 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.042577 B = 0.006550 C = 0.006385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.479385 B = 4273.795727 C = 4384.100003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.613 5.613 3 C 0.127 3.873 4 C -0.024 4.024 5 C -0.517 4.517 6 H 0.074 0.926 7 C 0.069 3.931 8 N -0.903 5.903 9 Si 0.879 3.121 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.265 1.265 13 C 0.578 3.422 14 O -0.541 6.541 15 C -0.217 4.217 16 C -0.144 4.144 17 C -0.028 4.028 18 N -0.557 5.557 19 H 0.414 0.586 20 C 0.020 3.980 21 H 0.052 0.948 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.022 0.978 27 H 0.010 0.990 28 H 0.263 0.737 29 H 0.146 0.854 30 H 0.167 0.833 31 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.613 -17.360 5.202 22.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.345 5.345 3 C 0.007 3.993 4 C -0.062 4.062 5 C -0.556 4.556 6 H 0.092 0.908 7 C -0.132 4.132 8 N -0.542 5.542 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.190 1.190 13 C 0.368 3.632 14 O -0.419 6.419 15 C -0.228 4.228 16 C -0.168 4.168 17 C -0.155 4.155 18 N -0.152 5.152 19 H 0.250 0.750 20 C -0.115 4.115 21 H 0.071 0.929 22 H 0.094 0.906 23 H 0.095 0.905 24 H 0.087 0.913 25 H 0.097 0.903 26 H 0.040 0.960 27 H 0.028 0.972 28 H 0.073 0.927 29 H 0.164 0.836 30 H 0.184 0.816 31 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -12.977 -17.275 5.123 22.205 hybrid contribution -0.690 -0.431 -0.952 1.252 sum -13.667 -17.705 4.170 22.752 Atomic orbital electron populations 1.22270 0.81371 1.03731 1.00645 1.47914 1.06311 1.07003 1.73318 1.21634 0.96329 0.81334 1.00042 1.19879 0.96494 0.97303 0.92533 1.21000 1.35630 1.04310 0.94650 0.90823 1.24971 0.94554 0.94622 0.99082 1.69913 1.39971 1.17488 1.26857 0.86783 0.78198 0.80739 0.83661 1.20403 1.21319 1.18956 1.17462 0.86788 0.82544 0.76439 1.90768 1.13457 1.87214 1.50439 1.20663 0.93193 0.94380 1.14535 1.21994 0.98992 0.90522 1.05308 1.21766 0.85831 0.98006 1.09914 1.41674 1.10664 1.07259 1.55616 0.75003 1.23008 0.97321 0.85910 1.05219 0.92936 0.90566 0.90513 0.91309 0.90254 0.96011 0.97174 0.92748 0.83590 0.81555 0.79417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.79 8.78 59.85 0.53 1.31 16 2 N -0.61 -11.21 2.87 -182.91 -0.53 -11.73 16 3 C 0.13 2.75 5.33 -4.04 -0.02 2.72 16 4 C -0.02 -0.61 4.37 -27.88 -0.12 -0.73 16 5 C -0.52 -15.31 9.66 -34.44 -0.33 -15.65 16 6 H 0.07 2.30 7.99 -52.49 -0.42 1.88 16 7 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 8 N -0.90 -28.58 13.96 55.43 0.77 -27.81 16 9 Si 0.88 22.75 27.47 -169.99 -4.67 18.08 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 12 H -0.26 -6.83 6.54 56.52 0.37 -6.46 16 13 C 0.58 11.47 7.67 -12.59 -0.10 11.38 16 14 O -0.54 -13.11 16.56 5.26 0.09 -13.02 16 15 C -0.22 -3.38 6.07 -103.35 -0.63 -4.00 16 16 C -0.14 -2.00 11.00 -37.50 -0.41 -2.41 16 17 C -0.03 -0.27 11.88 -16.83 -0.20 -0.47 16 18 N -0.56 -4.59 5.90 -12.85 -0.08 -4.67 16 19 H 0.41 1.74 8.96 -40.82 -0.37 1.38 16 20 C 0.02 0.21 9.76 -16.84 -0.16 0.05 16 21 H 0.05 0.51 7.61 -51.93 -0.39 0.11 16 22 H 0.08 0.94 8.03 -51.93 -0.42 0.52 16 23 H 0.08 0.81 4.93 -51.93 -0.26 0.56 16 24 H 0.07 1.34 8.07 -51.93 -0.42 0.92 16 25 H 0.08 1.86 7.40 -51.93 -0.38 1.48 16 26 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 27 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 28 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 29 H 0.15 2.05 8.06 -52.48 -0.42 1.63 16 30 H 0.17 1.04 8.06 -52.48 -0.42 0.62 16 31 H 0.19 1.48 4.64 -52.48 -0.24 1.23 16 LS Contribution 264.34 15.07 3.98 3.98 Total: -1.00 -37.40 264.34 -5.65 -43.06 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -3.68 Total: -2.09 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -1.55 Total: -5.81 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: 0.17 Total: -44.21 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.09 Total: -13.02 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.67 Total: 18.08 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -37.40 -5.65 -43.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259746063.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.574 kcal (2) G-P(sol) polarization free energy of solvation -37.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds