Wall clock time and date at job start Mon Mar 30 2020 03:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46492 * 120.00293 * 2 1 4 4 C 1.53005 * 109.47231 * 270.00218 * 3 2 1 5 5 C 1.50697 * 109.47086 * 179.97438 * 4 3 2 6 6 H 1.08001 * 120.00648 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99888 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99991 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00114 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47055 * 89.99701 * 9 7 5 11 11 H 1.48501 * 109.47176 * 209.99850 * 9 7 5 12 12 H 1.48501 * 109.46751 * 330.00058 * 9 7 5 13 13 C 1.34782 * 119.99694 * 180.02562 * 2 1 3 14 14 O 1.21625 * 119.99870 * 181.76242 * 13 2 1 15 15 C 1.47267 * 119.99947 * 1.75729 * 13 2 1 16 16 C 1.46689 * 126.94172 * 165.32213 * 15 13 2 17 17 C 1.34481 * 106.33138 * 180.02562 * 16 15 13 18 18 N 1.36445 * 108.86163 * 0.02562 * 17 16 15 19 19 H 0.96993 * 124.85345 * 179.97438 * 18 17 16 20 20 C 1.34663 * 110.29236 * 0.26485 * 18 17 16 21 21 H 1.08999 * 109.47178 * 264.31390 * 1 2 3 22 22 H 1.08999 * 109.46781 * 24.30868 * 1 2 3 23 23 H 1.09001 * 109.47720 * 144.30815 * 1 2 3 24 24 H 1.09000 * 109.47334 * 29.99879 * 3 2 1 25 25 H 1.08997 * 109.47192 * 150.00041 * 3 2 1 26 26 H 1.09002 * 109.47184 * 300.00149 * 4 3 2 27 27 H 1.08997 * 109.47177 * 59.99814 * 4 3 2 28 28 H 0.97000 * 119.99786 * 180.02562 * 8 7 5 29 29 H 1.08003 * 126.82997 * 0.02562 * 16 15 13 30 30 H 1.08003 * 125.56678 * 179.97438 * 17 16 15 31 31 H 1.08004 * 125.79517 * 179.73130 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4525 1.7103 -1.4425 5 6 3.2055 3.0157 -1.4425 6 1 3.4757 3.4834 -0.5072 7 6 3.5506 3.6125 -2.6366 8 7 4.2082 4.7515 -2.6366 9 14 3.0841 2.8034 -4.2543 10 1 1.7480 3.2890 -4.6834 11 1 4.0919 3.1483 -5.2890 12 1 3.0415 1.3297 -4.0765 13 6 2.1389 -1.1673 -0.0005 14 8 3.3547 -1.1676 0.0319 15 6 1.4030 -2.4423 -0.0402 16 6 1.9522 -3.7681 -0.3437 17 6 0.9235 -4.6307 -0.2653 18 7 -0.2073 -3.9401 0.0604 19 1 -1.0848 -4.3366 0.1766 20 6 0.0679 -2.6284 0.1913 21 1 -0.3633 -0.1018 1.0226 22 1 -0.3633 0.9366 -0.4230 23 1 -0.3634 -0.8346 -0.5995 24 1 1.6085 2.0283 0.5138 25 1 3.1499 1.1383 0.5138 26 1 3.0415 0.9507 -1.9564 27 1 1.5001 1.8407 -1.9563 28 1 4.4506 5.1715 -3.4766 29 1 2.9786 -4.0045 -0.5827 30 1 0.9826 -5.6959 -0.4334 31 1 -0.6440 -1.8553 0.4402 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259746063.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:46 Heat of formation + Delta-G solvation = -1.770612 kcal Electronic energy + Delta-G solvation = -14786.227590 eV Core-core repulsion = 12261.090129 eV Total energy + Delta-G solvation = -2525.137462 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.10640 -40.19302 -36.91796 -35.17136 -32.94307 -31.61830 -30.13528 -27.97477 -26.83561 -23.68229 -22.16952 -21.48080 -20.46378 -19.05978 -18.71021 -17.31103 -16.71440 -16.43382 -16.03923 -14.97211 -14.92381 -14.86335 -14.67341 -14.34500 -13.90175 -13.82585 -13.50352 -13.19136 -12.86938 -12.49579 -12.20574 -11.94773 -11.74986 -11.53534 -10.85933 -10.79868 -9.82447 -9.46486 -9.25983 -8.33320 -6.37566 0.84536 1.28684 1.33999 1.46499 1.56143 2.12968 2.32791 2.52058 2.62617 3.01467 3.88287 4.12011 4.31478 4.32988 4.40427 4.47012 4.59931 4.73610 4.83127 4.90357 5.02850 5.10745 5.16620 5.35579 5.51701 5.69754 5.80249 5.97534 6.22154 6.60490 6.68488 6.76529 7.26610 7.37597 8.83280 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.042577 B = 0.006550 C = 0.006385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.479385 B = 4273.795727 C = 4384.100003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.614 5.614 3 C 0.138 3.862 4 C -0.013 4.013 5 C -0.532 4.532 6 H 0.039 0.961 7 C 0.010 3.990 8 N -0.946 5.946 9 Si 0.949 3.051 10 H -0.252 1.252 11 H -0.280 1.280 12 H -0.267 1.267 13 C 0.566 3.434 14 O -0.609 6.609 15 C -0.271 4.271 16 C -0.194 4.194 17 C 0.005 3.995 18 N -0.533 5.533 19 H 0.440 0.560 20 C 0.055 3.945 21 H 0.090 0.910 22 H 0.081 0.919 23 H 0.101 0.899 24 H 0.091 0.909 25 H 0.046 0.954 26 H -0.006 1.006 27 H 0.029 0.971 28 H 0.268 0.732 29 H 0.125 0.875 30 H 0.208 0.792 31 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.557 -19.603 4.658 26.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.345 5.345 3 C 0.015 3.985 4 C -0.051 4.051 5 C -0.571 4.571 6 H 0.057 0.943 7 C -0.187 4.187 8 N -0.586 5.586 9 Si 0.772 3.228 10 H -0.177 1.177 11 H -0.206 1.206 12 H -0.192 1.192 13 C 0.359 3.641 14 O -0.492 6.492 15 C -0.281 4.281 16 C -0.218 4.218 17 C -0.124 4.124 18 N -0.130 5.130 19 H 0.281 0.719 20 C -0.082 4.082 21 H 0.108 0.892 22 H 0.100 0.900 23 H 0.119 0.881 24 H 0.109 0.891 25 H 0.064 0.936 26 H 0.013 0.987 27 H 0.047 0.953 28 H 0.077 0.923 29 H 0.143 0.857 30 H 0.225 0.775 31 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -17.015 -19.541 4.593 26.315 hybrid contribution 0.512 0.239 -0.697 0.897 sum -16.504 -19.302 3.897 25.693 Atomic orbital electron populations 1.22703 0.77409 1.05147 1.03623 1.47942 1.08710 1.05186 1.72693 1.21229 0.96163 0.83793 0.97329 1.19720 0.96033 0.94284 0.95058 1.21307 1.36257 1.05889 0.93606 0.94258 1.25916 0.94406 0.95141 1.03232 1.70047 1.41231 1.19090 1.28253 0.85680 0.79168 0.79285 0.78623 1.17669 1.20588 1.19156 1.18260 0.86419 0.84269 0.75161 1.90710 1.16498 1.88252 1.53769 1.20459 0.95442 0.92794 1.19400 1.22078 0.99692 0.91380 1.08659 1.22195 0.84700 0.99125 1.06335 1.41717 1.11602 1.06346 1.53328 0.71858 1.23283 0.95603 0.87481 1.01836 0.89182 0.90031 0.88115 0.89065 0.93575 0.98732 0.95279 0.92281 0.85731 0.77508 0.76024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.11 8.78 127.77 1.12 2.23 16 2 N -0.61 -22.16 2.87 -850.85 -2.44 -24.60 16 3 C 0.14 6.07 5.33 86.38 0.46 6.54 16 4 C -0.01 -0.65 4.37 29.85 0.13 -0.52 16 5 C -0.53 -32.58 9.66 25.60 0.25 -32.33 16 6 H 0.04 2.59 7.99 -2.91 -0.02 2.57 16 7 C 0.01 0.64 5.47 84.65 0.46 1.10 16 8 N -0.95 -61.24 13.96 21.45 0.30 -60.94 16 9 Si 0.95 47.14 27.47 68.60 1.88 49.03 16 10 H -0.25 -11.47 7.11 99.48 0.71 -10.77 16 11 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 12 H -0.27 -13.26 6.54 99.48 0.65 -12.61 16 13 C 0.57 23.07 7.67 86.62 0.66 23.74 16 14 O -0.61 -31.73 16.56 -4.11 -0.07 -31.80 16 15 C -0.27 -8.15 6.07 -19.04 -0.12 -8.26 16 16 C -0.19 -5.32 11.00 23.62 0.26 -5.06 16 17 C 0.01 0.08 11.88 83.12 0.99 1.07 16 18 N -0.53 -6.00 5.90 -194.56 -1.15 -7.15 16 19 H 0.44 0.85 8.96 -92.71 -0.83 0.02 16 20 C 0.06 0.95 9.76 83.91 0.82 1.77 16 21 H 0.09 1.29 7.61 -2.39 -0.02 1.27 16 22 H 0.08 1.69 8.03 -2.39 -0.02 1.67 16 23 H 0.10 1.66 4.93 -2.39 -0.01 1.65 16 24 H 0.09 3.56 8.07 -2.39 -0.02 3.54 16 25 H 0.05 2.31 7.40 -2.39 -0.02 2.30 16 26 H -0.01 -0.33 7.20 -2.39 -0.02 -0.35 16 27 H 0.03 1.39 7.57 -2.39 -0.02 1.37 16 28 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 29 H 0.12 3.78 8.06 -2.91 -0.02 3.76 16 30 H 0.21 1.52 8.06 -2.91 -0.02 1.49 16 31 H 0.22 2.15 4.64 -2.91 -0.01 2.14 16 Total: -1.00 -88.47 264.34 3.82 -84.65 By element: Atomic # 1 Polarization: 0.28 SS G_CDS: 0.26 Total: 0.54 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: 5.04 Total: -9.73 kcal Atomic # 7 Polarization: -89.39 SS G_CDS: -3.29 Total: -92.69 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -0.07 Total: -31.80 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 1.88 Total: 49.03 kcal Total: -88.47 3.82 -84.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259746063.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.881 kcal (2) G-P(sol) polarization free energy of solvation -88.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds