Wall clock time and date at job start Mon Mar 30 2020 03:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00238 * 2 1 4 4 C 1.50698 * 109.47218 * 179.97438 * 3 2 1 5 5 N 1.30413 * 125.64667 * 180.02562 * 4 3 2 6 6 C 1.34495 * 109.30013 * 180.02562 * 5 4 3 7 7 C 1.34423 * 107.85794 * 359.97438 * 6 5 4 8 8 N 1.34988 * 125.64963 * 0.02988 * 4 3 2 9 9 H 0.97008 * 126.41742 * 359.96164 * 8 4 3 10 10 C 1.51187 * 110.52947 * 180.02562 * 7 6 5 11 11 H 1.09002 * 110.34776 * 257.86575 * 10 7 6 12 12 C 1.50695 * 110.34506 * 135.69711 * 10 7 6 13 13 H 1.07997 * 119.99809 * 241.45336 * 12 10 7 14 14 C 1.37873 * 120.00070 * 61.45785 * 12 10 7 15 15 N 1.31511 * 120.00090 * 359.97438 * 14 12 10 16 16 Si 1.86805 * 120.00130 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46852 * 89.99842 * 16 14 12 18 18 H 1.48498 * 109.47336 * 209.99653 * 16 14 12 19 19 H 1.48502 * 109.46991 * 330.00109 * 16 14 12 20 20 C 1.54489 * 104.93728 * 16.83214 * 10 7 6 21 21 C 1.51372 * 141.86094 * 179.97438 * 6 5 4 22 22 H 1.08994 * 109.47041 * 59.99880 * 1 2 3 23 23 H 1.09002 * 109.47374 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47064 * 299.99594 * 1 2 3 25 25 H 1.09002 * 109.46775 * 59.99991 * 3 2 1 26 26 H 1.09004 * 109.47154 * 300.00188 * 3 2 1 27 27 H 0.97006 * 120.00149 * 180.02562 * 15 14 12 28 28 H 1.09003 * 110.94158 * 92.61988 * 20 10 7 29 29 H 1.08996 * 110.94394 * 216.28118 * 20 10 7 30 30 H 1.08997 * 110.33760 * 282.01402 * 21 6 5 31 31 H 1.09002 * 110.33721 * 44.25403 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.3539 2.1828 0.0013 6 6 5.6106 1.7035 0.0011 7 6 5.5398 0.3612 0.0010 8 7 4.2102 0.0308 0.0006 9 1 3.8395 -0.8657 0.0006 10 6 6.9257 -0.2429 0.0014 11 1 7.1878 -0.5911 -0.9977 12 6 7.0017 -1.3793 0.9882 13 1 7.6865 -1.3259 1.8215 14 6 6.1969 -2.4871 0.8271 15 7 5.3626 -2.5518 -0.1874 16 14 6.2915 -3.8961 2.0499 17 1 5.3237 -3.6612 3.1516 18 1 5.9602 -5.1705 1.3634 19 1 7.6657 -3.9766 2.6070 20 6 7.8614 0.9078 0.4342 21 6 7.0561 2.1527 0.0011 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 1.6886 1.8463 0.8900 26 1 1.6886 1.8464 -0.8900 27 1 4.7960 -3.3311 -0.3005 28 1 8.0160 0.8994 1.5131 29 1 8.8133 0.8555 -0.0943 30 1 7.3547 2.4684 -0.9985 31 1 7.2007 2.9641 0.7145 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259779250.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:38 Heat of formation + Delta-G solvation = 11.299154 kcal Electronic energy + Delta-G solvation = -15250.743660 eV Core-core repulsion = 12726.172946 eV Total energy + Delta-G solvation = -2524.570714 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.14636 -37.68220 -35.57250 -32.78851 -30.87907 -29.36885 -27.52975 -26.28211 -24.63200 -23.63170 -19.92200 -19.59276 -18.65176 -16.72639 -16.28978 -15.85864 -15.74599 -14.75530 -14.63982 -14.13834 -13.31808 -12.50858 -12.40592 -12.16092 -12.12490 -11.81910 -11.38834 -11.30258 -11.02653 -10.78129 -10.59559 -10.09266 -9.82393 -9.59851 -9.26385 -8.95772 -8.63625 -8.44730 -6.83787 -6.22734 -4.27925 3.20950 3.28394 3.29746 3.34468 3.69640 4.03573 4.26122 4.33287 5.06926 5.11175 5.32468 5.34418 5.51328 5.66888 5.70910 5.90217 5.92478 6.09713 6.40734 6.52426 6.72991 6.88177 6.96159 7.10759 7.24303 7.53196 7.67311 7.75318 7.84425 8.18656 8.68786 8.85615 9.15488 9.38728 10.86270 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.020595 B = 0.012168 C = 0.008036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.217115 B = 2300.490414 C = 3483.516364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.392 6.392 3 C 0.164 3.836 4 C 0.149 3.851 5 N -0.479 5.479 6 C -0.092 4.092 7 C 0.066 3.934 8 N -0.505 5.505 9 H 0.427 0.573 10 C 0.106 3.894 11 H 0.048 0.952 12 C -0.502 4.502 13 H 0.064 0.936 14 C 0.058 3.942 15 N -0.899 5.899 16 Si 0.897 3.103 17 H -0.281 1.281 18 H -0.285 1.285 19 H -0.272 1.272 20 C -0.108 4.108 21 C -0.019 4.019 22 H 0.042 0.958 23 H 0.086 0.914 24 H 0.042 0.958 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.264 0.736 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.521 4.190 0.005 6.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.310 6.310 3 C 0.086 3.914 4 C -0.113 4.113 5 N -0.202 5.202 6 C -0.220 4.220 7 C -0.057 4.057 8 N -0.109 5.109 9 H 0.271 0.729 10 C 0.086 3.914 11 H 0.066 0.934 12 C -0.540 4.540 13 H 0.083 0.917 14 C -0.142 4.142 15 N -0.539 5.539 16 Si 0.725 3.275 17 H -0.207 1.207 18 H -0.211 1.211 19 H -0.196 1.196 20 C -0.147 4.147 21 C -0.058 4.058 22 H 0.061 0.939 23 H 0.105 0.895 24 H 0.060 0.940 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.801 4.734 -0.072 7.487 hybrid contribution -0.474 -1.898 0.614 2.050 sum -6.274 2.836 0.542 6.907 Atomic orbital electron populations 1.22720 0.80466 1.02856 0.99967 1.87845 1.20054 1.27611 1.95504 1.20306 0.85432 0.84436 1.01203 1.22214 0.93673 0.82335 1.13067 1.69192 0.99452 1.30668 1.20904 1.21263 0.92898 0.92802 1.15061 1.22599 0.87032 0.95643 1.00382 1.42667 1.05488 1.09897 1.52822 0.72939 1.18046 0.83364 0.92132 0.97835 0.93397 1.21342 1.21368 1.01072 1.10250 0.91746 1.25040 0.95258 0.98475 0.95472 1.69769 1.24528 1.30105 1.29480 0.86490 0.78642 0.81361 0.81018 1.20664 1.21066 1.19631 1.22437 0.97384 0.93978 1.00854 1.20223 0.87559 0.97791 1.00199 0.93932 0.89519 0.93958 0.91475 0.91423 0.92602 0.91517 0.91670 0.92027 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 11.01 101.05 1.11 1.54 16 2 O -0.39 -6.71 10.20 -35.23 -0.36 -7.07 16 3 C 0.16 2.83 6.56 36.00 0.24 3.07 16 4 C 0.15 3.36 7.96 -155.54 -1.24 2.12 16 5 N -0.48 -11.46 11.26 -6.87 -0.08 -11.54 16 6 C -0.09 -2.23 7.98 -82.44 -0.66 -2.89 16 7 C 0.07 1.69 6.59 -81.39 -0.54 1.15 16 8 N -0.51 -12.55 5.77 -6.45 -0.04 -12.58 16 9 H 0.43 10.81 6.82 -40.82 -0.28 10.53 16 10 C 0.11 2.64 2.83 -91.91 -0.26 2.38 16 11 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 12 C -0.50 -13.39 8.53 -34.44 -0.29 -13.68 16 13 H 0.06 1.68 7.63 -52.49 -0.40 1.27 16 14 C 0.06 1.54 5.32 -17.82 -0.09 1.44 16 15 N -0.90 -24.46 10.70 55.43 0.59 -23.86 16 16 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 20 C -0.11 -2.21 6.63 -25.18 -0.17 -2.38 16 21 C -0.02 -0.38 6.79 -26.78 -0.18 -0.57 16 22 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 28 H 0.07 1.35 7.79 -51.93 -0.40 0.95 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 262.79 15.07 3.96 3.96 Total: -1.00 -30.29 262.79 -7.04 -37.34 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -4.02 Total: 5.83 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -2.08 Total: -7.80 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: 0.48 Total: -47.98 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -0.36 Total: -7.07 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.29 -7.04 -37.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259779250.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.636 kcal (2) G-P(sol) polarization free energy of solvation -30.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds