Wall clock time and date at job start Mon Mar 30 2020 03:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00238 * 2 1 4 4 C 1.50698 * 109.47218 * 179.97438 * 3 2 1 5 5 N 1.30413 * 125.64667 * 180.02562 * 4 3 2 6 6 C 1.34495 * 109.30013 * 180.02562 * 5 4 3 7 7 C 1.34423 * 107.85794 * 359.97438 * 6 5 4 8 8 N 1.34988 * 125.64963 * 0.02988 * 4 3 2 9 9 H 0.97008 * 126.41742 * 359.96164 * 8 4 3 10 10 C 1.51187 * 110.52947 * 180.02562 * 7 6 5 11 11 H 1.09002 * 110.34776 * 257.86575 * 10 7 6 12 12 C 1.50695 * 110.34506 * 135.69711 * 10 7 6 13 13 H 1.07997 * 119.99809 * 241.45336 * 12 10 7 14 14 C 1.37873 * 120.00070 * 61.45785 * 12 10 7 15 15 N 1.31511 * 120.00090 * 359.97438 * 14 12 10 16 16 Si 1.86805 * 120.00130 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46852 * 89.99842 * 16 14 12 18 18 H 1.48498 * 109.47336 * 209.99653 * 16 14 12 19 19 H 1.48502 * 109.46991 * 330.00109 * 16 14 12 20 20 C 1.54489 * 104.93728 * 16.83214 * 10 7 6 21 21 C 1.51372 * 141.86094 * 179.97438 * 6 5 4 22 22 H 1.08994 * 109.47041 * 59.99880 * 1 2 3 23 23 H 1.09002 * 109.47374 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47064 * 299.99594 * 1 2 3 25 25 H 1.09002 * 109.46775 * 59.99991 * 3 2 1 26 26 H 1.09004 * 109.47154 * 300.00188 * 3 2 1 27 27 H 0.97006 * 120.00149 * 180.02562 * 15 14 12 28 28 H 1.09003 * 110.94158 * 92.61988 * 20 10 7 29 29 H 1.08996 * 110.94394 * 216.28118 * 20 10 7 30 30 H 1.08997 * 110.33760 * 282.01402 * 21 6 5 31 31 H 1.09002 * 110.33721 * 44.25403 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.3539 2.1828 0.0013 6 6 5.6106 1.7035 0.0011 7 6 5.5398 0.3612 0.0010 8 7 4.2102 0.0308 0.0006 9 1 3.8395 -0.8657 0.0006 10 6 6.9257 -0.2429 0.0014 11 1 7.1878 -0.5911 -0.9977 12 6 7.0017 -1.3793 0.9882 13 1 7.6865 -1.3259 1.8215 14 6 6.1969 -2.4871 0.8271 15 7 5.3626 -2.5518 -0.1874 16 14 6.2915 -3.8961 2.0499 17 1 5.3237 -3.6612 3.1516 18 1 5.9602 -5.1705 1.3634 19 1 7.6657 -3.9766 2.6070 20 6 7.8614 0.9078 0.4342 21 6 7.0561 2.1527 0.0011 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 1.6886 1.8463 0.8900 26 1 1.6886 1.8464 -0.8900 27 1 4.7960 -3.3311 -0.3005 28 1 8.0160 0.8994 1.5131 29 1 8.8133 0.8555 -0.0943 30 1 7.3547 2.4684 -0.9985 31 1 7.2007 2.9641 0.7145 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259779250.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:38 Heat of formation + Delta-G solvation = -8.306911 kcal Electronic energy + Delta-G solvation = -15251.593842 eV Core-core repulsion = 12726.172946 eV Total energy + Delta-G solvation = -2525.420897 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.93359 -38.92810 -37.30610 -34.73242 -32.73554 -30.80176 -29.37785 -27.50750 -26.12244 -25.50055 -21.57990 -21.42846 -20.41570 -18.66331 -17.96874 -17.12940 -17.02746 -16.56686 -16.16194 -15.81281 -14.90032 -14.22698 -14.09820 -13.77428 -13.59868 -13.33727 -13.13903 -12.86185 -12.54921 -12.38828 -12.32817 -11.83584 -11.57668 -11.11336 -10.89460 -10.81861 -10.46485 -10.38689 -8.65473 -8.22912 -6.35173 1.37046 1.39495 1.48170 1.52401 2.23206 2.35390 2.40715 2.61159 3.06728 3.58704 4.02698 4.25190 4.37477 4.38624 4.49380 4.51680 4.57860 4.72165 4.82821 4.87606 5.04465 5.18724 5.32034 5.40263 5.62287 5.73960 5.81203 5.96435 6.15684 6.23011 6.71919 6.95654 7.32744 7.34712 8.84500 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.020595 B = 0.012168 C = 0.008036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.217115 B = 2300.490414 C = 3483.516364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.424 6.424 3 C 0.167 3.833 4 C 0.153 3.847 5 N -0.498 5.498 6 C -0.100 4.100 7 C 0.020 3.980 8 N -0.519 5.519 9 H 0.421 0.579 10 C 0.097 3.903 11 H 0.019 0.981 12 C -0.522 4.522 13 H 0.065 0.935 14 C 0.014 3.986 15 N -0.920 5.920 16 Si 0.957 3.043 17 H -0.282 1.282 18 H -0.282 1.282 19 H -0.264 1.264 20 C -0.097 4.097 21 C -0.014 4.014 22 H 0.061 0.939 23 H 0.096 0.904 24 H 0.060 0.940 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.264 0.736 28 H 0.067 0.933 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.002 4.829 0.562 7.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.343 6.343 3 C 0.089 3.911 4 C -0.110 4.110 5 N -0.221 5.221 6 C -0.228 4.228 7 C -0.101 4.101 8 N -0.121 5.121 9 H 0.263 0.737 10 C 0.078 3.922 11 H 0.037 0.963 12 C -0.560 4.560 13 H 0.083 0.917 14 C -0.184 4.184 15 N -0.560 5.560 16 Si 0.783 3.217 17 H -0.208 1.208 18 H -0.208 1.208 19 H -0.188 1.188 20 C -0.135 4.135 21 C -0.053 4.053 22 H 0.080 0.920 23 H 0.115 0.885 24 H 0.078 0.922 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.264 5.387 0.484 8.276 hybrid contribution -0.422 -2.097 0.407 2.178 sum -6.686 3.289 0.890 7.505 Atomic orbital electron populations 1.23003 0.77683 1.04192 1.01785 1.87807 1.23062 1.27590 1.95831 1.20483 0.82196 0.85130 1.03324 1.23361 0.96008 0.81314 1.10282 1.69264 0.99603 1.30954 1.22236 1.22009 0.94513 0.92632 1.13639 1.22826 0.87552 0.96620 1.03062 1.42780 1.05732 1.10190 1.53440 0.73711 1.18090 0.84595 0.93452 0.96066 0.96296 1.21654 1.21538 1.02090 1.10707 0.91723 1.25758 0.95007 1.00678 0.96982 1.69885 1.24918 1.30525 1.30691 0.85554 0.78726 0.78585 0.78827 1.20847 1.20794 1.18822 1.22392 0.97702 0.92270 1.01157 1.20331 0.84976 0.98022 1.01948 0.92035 0.88537 0.92150 0.89267 0.89081 0.92705 0.91460 0.88930 0.90106 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.85 16 2 O -0.42 -13.95 10.20 -148.98 -1.52 -15.47 16 3 C 0.17 5.45 6.56 71.24 0.47 5.91 16 4 C 0.15 6.82 7.96 138.17 1.10 7.92 16 5 N -0.50 -23.40 11.26 -175.64 -1.98 -25.37 16 6 C -0.10 -4.79 7.98 41.49 0.33 -4.46 16 7 C 0.02 1.06 6.59 41.03 0.27 1.33 16 8 N -0.52 -26.09 5.77 -174.31 -1.01 -27.10 16 9 H 0.42 21.82 6.82 -92.70 -0.63 21.19 16 10 C 0.10 4.94 2.83 -11.63 -0.03 4.91 16 11 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 12 C -0.52 -28.11 8.53 25.60 0.22 -27.89 16 13 H 0.06 3.37 7.63 -2.91 -0.02 3.35 16 14 C 0.01 0.74 5.32 84.65 0.45 1.19 16 15 N -0.92 -51.04 10.70 21.45 0.23 -50.81 16 16 Si 0.96 42.75 29.54 68.60 2.03 44.78 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 20 C -0.10 -3.86 6.63 31.60 0.21 -3.65 16 21 C -0.01 -0.55 6.79 30.56 0.21 -0.34 16 22 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 26 H 0.09 2.54 8.14 -2.38 -0.02 2.52 16 27 H 0.26 13.98 8.31 -92.70 -0.77 13.21 16 28 H 0.07 2.64 7.79 -2.39 -0.02 2.62 16 29 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 30 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 31 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -65.34 262.79 2.73 -62.62 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: 0.50 Total: 24.57 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: 4.47 Total: -13.23 kcal Atomic # 7 Polarization: -100.52 SS G_CDS: -2.75 Total: -103.28 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -1.52 Total: -15.47 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -65.34 2.73 -62.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259779250.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.310 kcal (2) G-P(sol) polarization free energy of solvation -65.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds