Wall clock time and date at job start Mon Mar 30 2020 03:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.40295 * 126.00164 * 2 1 4 4 C 1.30133 * 108.26395 * 180.02562 * 3 2 1 5 5 C 1.40434 * 108.28579 * 359.89606 * 4 3 2 6 6 C 1.35186 * 107.97675 * 0.12591 * 5 4 3 7 7 O 1.35762 * 126.26209 * 179.88433 * 6 5 4 8 8 C 1.50869 * 123.67474 * 180.15966 * 5 4 3 9 9 H 1.08998 * 109.71831 * 256.78636 * 8 5 4 10 10 C 1.50708 * 109.71686 * 136.17826 * 8 5 4 11 11 H 1.07993 * 120.00159 * 324.83221 * 10 8 5 12 12 C 1.37876 * 119.99444 * 144.83733 * 10 8 5 13 13 N 1.31507 * 120.00378 * 5.99070 * 12 10 8 14 14 Si 1.86800 * 119.99443 * 185.99236 * 12 10 8 15 15 H 1.48503 * 109.47006 * 269.99749 * 14 12 10 16 16 H 1.48503 * 109.47543 * 29.99725 * 14 12 10 17 17 H 1.48500 * 109.46958 * 149.99880 * 14 12 10 18 18 C 1.53392 * 108.19172 * 16.50803 * 8 5 4 19 19 C 1.53022 * 109.71136 * 309.48974 * 18 8 5 20 20 C 1.50965 * 128.25243 * 179.69904 * 4 3 2 21 21 H 1.08999 * 109.47339 * 270.02871 * 1 2 3 22 22 H 1.09005 * 109.47048 * 30.02411 * 1 2 3 23 23 H 1.09000 * 109.46956 * 150.02177 * 1 2 3 24 24 H 0.96696 * 113.99952 * 88.22692 * 7 6 5 25 25 H 0.97005 * 120.00290 * 174.94712 * 13 12 10 26 26 H 1.08996 * 109.43538 * 69.56767 * 18 8 5 27 27 H 1.09005 * 109.43079 * 189.41970 * 18 8 5 28 28 H 1.08996 * 109.42671 * 311.62494 * 19 18 8 29 29 H 1.09007 * 109.42545 * 191.79464 * 19 18 8 30 30 H 1.08996 * 109.71486 * 316.51749 * 20 4 3 31 31 H 1.09000 * 109.71714 * 77.12033 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2897 1.1350 0.0000 4 6 3.5292 0.7385 -0.0006 5 6 3.5426 -0.6657 0.0015 6 6 2.2608 -1.0953 0.0005 7 8 1.8472 -2.3883 -0.0004 8 6 4.8061 -1.4902 0.0050 9 1 4.9878 -1.8891 -0.9929 10 6 4.6707 -2.6239 0.9888 11 1 4.1205 -2.4795 1.9068 12 6 5.2493 -3.8454 0.7167 13 7 6.0170 -3.9883 -0.3415 14 14 4.9428 -5.2974 1.8512 15 1 5.9795 -5.3224 2.9142 16 1 3.6003 -5.1658 2.4722 17 1 5.0051 -6.5583 1.0693 18 6 5.9699 -0.5812 0.4200 19 6 5.9570 0.6930 -0.4272 20 6 4.7806 1.5829 -0.0070 21 1 -0.3634 0.0005 1.0276 22 1 -0.3633 0.8898 -0.5142 23 1 -0.3633 -0.8902 -0.5135 24 1 1.7529 -2.7717 0.8823 25 1 6.4827 -4.8256 -0.4934 26 1 5.8669 -0.3179 1.4726 27 1 6.9126 -1.1074 0.2691 28 1 5.8532 0.4278 -1.4793 29 1 6.8915 1.2349 -0.2813 30 1 4.6676 2.4024 -0.7168 31 1 4.9595 1.9829 0.9910 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259856369.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:59 Heat of formation + Delta-G solvation = 2.053167 kcal Electronic energy + Delta-G solvation = -15544.575376 eV Core-core repulsion = 13019.603726 eV Total energy + Delta-G solvation = -2524.971650 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.33584 -38.15973 -37.48419 -34.73414 -33.19507 -31.96925 -28.93462 -28.00227 -26.45807 -23.42250 -22.54761 -21.69749 -19.68014 -19.04615 -18.07767 -17.14627 -16.47300 -16.27355 -15.61554 -15.28333 -14.56384 -14.48118 -14.15662 -13.66312 -13.50674 -13.43145 -13.01829 -12.81080 -12.67597 -12.46070 -12.11499 -11.85526 -11.60200 -11.37419 -11.02409 -10.71954 -10.35348 -9.87994 -8.96459 -8.02252 -6.12669 0.86446 1.43983 1.45023 1.53502 1.55402 1.91328 2.48289 3.24417 3.32665 3.64955 4.15799 4.28440 4.35997 4.42769 4.63773 4.64641 4.86512 4.90722 4.98158 5.02480 5.09124 5.30669 5.36776 5.54470 5.68086 5.82325 5.87476 5.96230 6.08923 6.45967 6.80748 6.89506 7.00921 7.52546 9.04738 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.026386 B = 0.012000 C = 0.008789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.916367 B = 2332.778839 C = 3184.916049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.401 5.401 3 N -0.301 5.301 4 C 0.067 3.933 5 C -0.234 4.234 6 C 0.247 3.753 7 O -0.464 6.464 8 C 0.110 3.890 9 H 0.015 0.985 10 C -0.503 4.503 11 H 0.048 0.952 12 C 0.016 3.984 13 N -0.928 5.928 14 Si 0.950 3.050 15 H -0.279 1.279 16 H -0.259 1.259 17 H -0.291 1.291 18 C -0.096 4.096 19 C -0.110 4.110 20 C -0.027 4.027 21 H 0.085 0.915 22 H 0.098 0.902 23 H 0.093 0.907 24 H 0.403 0.597 25 H 0.259 0.741 26 H 0.044 0.956 27 H 0.034 0.966 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.107 7.665 2.248 10.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.197 5.197 3 N -0.127 5.127 4 C -0.099 4.099 5 C -0.246 4.246 6 C 0.081 3.919 7 O -0.268 6.268 8 C 0.090 3.910 9 H 0.033 0.967 10 C -0.542 4.542 11 H 0.066 0.934 12 C -0.182 4.182 13 N -0.568 5.568 14 Si 0.776 3.224 15 H -0.205 1.205 16 H -0.183 1.183 17 H -0.217 1.217 18 C -0.134 4.134 19 C -0.148 4.148 20 C -0.065 4.065 21 H 0.103 0.897 22 H 0.117 0.883 23 H 0.112 0.888 24 H 0.261 0.739 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.107 0.893 30 H 0.115 0.885 31 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.026 8.423 1.518 11.733 hybrid contribution 0.359 -2.102 0.885 2.308 sum -7.667 6.321 2.403 10.223 Atomic orbital electron populations 1.22010 0.72751 1.05216 1.04196 1.49202 1.07512 1.02657 1.60304 1.76855 1.01431 1.06878 1.27554 1.22632 0.94144 0.93935 0.99236 1.20787 0.95503 0.94517 1.13777 1.18251 0.88881 0.80931 1.03884 1.84740 1.88436 1.18933 1.34684 1.17234 0.86929 0.90977 0.95852 0.96672 1.21152 1.33155 0.95782 1.04061 0.93413 1.25703 0.95208 1.00967 0.96298 1.70041 1.31029 1.26764 1.28994 0.85673 0.79127 0.78936 0.78633 1.20527 1.18345 1.21683 1.21528 0.98550 0.95043 0.98296 1.21581 0.98005 0.95941 0.99257 1.20180 0.87103 0.95800 1.03451 0.89673 0.88290 0.88830 0.73918 0.93151 0.93704 0.94704 0.93453 0.89274 0.88537 0.88738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.40 11.42 127.77 1.46 3.85 16 2 N -0.40 -14.76 4.03 -481.54 -1.94 -16.70 16 3 N -0.30 -11.74 12.55 -47.15 -0.59 -12.33 16 4 C 0.07 2.69 7.10 43.43 0.31 3.00 16 5 C -0.23 -10.86 5.43 -19.98 -0.11 -10.97 16 6 C 0.25 10.58 7.71 83.44 0.64 11.22 16 7 O -0.46 -18.88 12.84 -90.89 -1.17 -20.05 16 8 C 0.11 5.67 2.55 -12.10 -0.03 5.64 16 9 H 0.02 0.91 7.39 -2.39 -0.02 0.90 16 10 C -0.50 -27.20 7.39 25.60 0.19 -27.01 16 11 H 0.05 2.53 7.82 -2.91 -0.02 2.50 16 12 C 0.02 0.90 5.45 84.66 0.46 1.36 16 13 N -0.93 -54.89 12.84 21.45 0.28 -54.62 16 14 Si 0.95 42.94 29.54 68.60 2.03 44.97 16 15 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 16 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 17 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 18 C -0.10 -4.30 5.17 30.73 0.16 -4.14 16 19 C -0.11 -3.86 5.86 30.73 0.18 -3.68 16 20 C -0.03 -0.85 6.31 30.06 0.19 -0.66 16 21 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 22 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 23 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.40 13.56 9.06 -74.06 -0.67 12.89 16 25 H 0.26 14.62 8.32 -92.70 -0.77 13.85 16 26 H 0.04 1.96 8.07 -2.39 -0.02 1.94 16 27 H 0.03 1.67 8.14 -2.38 -0.02 1.65 16 28 H 0.05 1.76 8.10 -2.39 -0.02 1.74 16 29 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 30 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -68.01 263.28 2.52 -65.49 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.46 Total: 14.62 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: 3.45 Total: -21.39 kcal Atomic # 7 Polarization: -81.39 SS G_CDS: -2.26 Total: -83.65 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -1.17 Total: -20.05 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -68.01 2.52 -65.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259856369.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.547 kcal (2) G-P(sol) polarization free energy of solvation -68.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds