Wall clock time and date at job start Mon Mar 30 2020 02:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47027 * 2 1 4 4 F 1.39898 * 109.47043 * 119.99490 * 2 1 3 5 5 C 1.50692 * 109.47362 * 240.00359 * 2 1 3 6 6 C 1.38266 * 119.99653 * 263.75667 * 5 2 1 7 7 C 1.38212 * 119.99939 * 179.76257 * 6 5 2 8 8 C 1.38261 * 119.99853 * 0.50757 * 7 6 5 9 9 C 1.38209 * 119.99924 * 359.74898 * 8 7 6 10 10 C 1.38213 * 120.00469 * 84.02639 * 5 2 1 11 11 C 1.50704 * 119.99730 * 0.02562 * 10 5 2 12 12 H 1.08996 * 109.46894 * 354.58088 * 11 10 5 13 13 C 1.52996 * 109.46830 * 234.58144 * 11 10 5 14 14 C 1.50703 * 109.46988 * 114.58203 * 11 10 5 15 15 H 1.07993 * 119.99975 * 359.97438 * 14 11 10 16 16 C 1.37873 * 119.99679 * 179.97438 * 14 11 10 17 17 N 1.31523 * 120.00330 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 119.99930 * 179.97438 * 16 14 11 19 19 H 1.48497 * 109.46978 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47132 * 119.99903 * 18 16 14 21 21 H 1.48496 * 109.47091 * 239.99953 * 18 16 14 22 22 H 1.08999 * 109.47453 * 299.99759 * 1 2 3 23 23 H 1.08997 * 109.47283 * 60.00439 * 1 2 3 24 24 H 1.08998 * 109.46876 * 179.97438 * 1 2 3 25 25 H 1.07996 * 120.00097 * 359.97438 * 6 5 2 26 26 H 1.08000 * 120.00000 * 180.23164 * 7 6 5 27 27 H 1.08001 * 120.00061 * 179.71883 * 8 7 6 28 28 H 1.08002 * 120.00192 * 179.97438 * 9 8 7 29 29 H 1.09000 * 109.47379 * 179.97438 * 13 11 10 30 30 H 1.09004 * 109.47530 * 299.99880 * 13 11 10 31 31 H 1.09004 * 109.47553 * 59.99952 * 13 11 10 32 32 H 0.96990 * 120.00245 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9963 -0.6594 1.1423 5 6 2.0324 -0.7103 -1.2304 6 6 2.3856 -2.0453 -1.1621 7 6 2.8417 -2.6981 -2.2918 8 6 2.9547 -2.0134 -3.4876 9 6 2.6066 -0.6776 -3.5546 10 6 2.1453 -0.0259 -2.4259 11 6 1.7666 1.4310 -2.4987 12 1 1.3394 1.7433 -1.5459 13 6 0.7362 1.6350 -3.6111 14 6 2.9937 2.2548 -2.7932 15 1 3.9519 1.7719 -2.9151 16 6 2.8929 3.6251 -2.9072 17 7 1.7260 4.2134 -2.7583 18 14 4.4139 4.6465 -3.2716 19 1 5.5932 3.7522 -3.3928 20 1 4.2206 5.3853 -4.5452 21 1 4.6369 5.6137 -2.1671 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 2.3018 -2.5789 -0.2269 26 1 3.1141 -3.7419 -2.2393 27 1 3.3154 -2.5223 -4.3693 28 1 2.6953 -0.1426 -4.4886 29 1 0.4619 2.6886 -3.6635 30 1 1.1635 1.3226 -4.5640 31 1 -0.1513 1.0391 -3.3981 32 1 1.6550 5.1773 -2.8388 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259930423.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:43 Heat of formation + Delta-G solvation = -45.285518 kcal Electronic energy + Delta-G solvation = -15261.537705 eV Core-core repulsion = 12714.593334 eV Total energy + Delta-G solvation = -2546.944371 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.112 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -47.18855 -38.90386 -34.51354 -32.78471 -31.34220 -29.06050 -28.10455 -25.19519 -23.38194 -22.74986 -20.45709 -19.43469 -16.48180 -16.45114 -15.72978 -14.96353 -14.61514 -14.36597 -13.75440 -13.58180 -12.94249 -12.68835 -12.46050 -12.01784 -11.89771 -11.47785 -11.42929 -11.05056 -10.94786 -10.81545 -10.54807 -10.40453 -10.30439 -9.89521 -9.39832 -9.05928 -8.41514 -8.19143 -7.80152 -6.07246 -4.14119 1.93104 2.10912 3.25692 3.34333 3.39142 4.32623 4.46143 4.99631 5.16815 5.24046 5.41261 5.58655 5.60212 5.62919 5.74726 6.03316 6.14662 6.15842 6.41285 6.48931 6.57696 6.66415 6.78945 6.99625 7.02909 7.12807 7.18592 7.30937 7.62853 7.69801 7.87675 8.02753 8.32346 8.88830 9.51140 10.98131 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.026304 B = 0.010004 C = 0.008804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.214474 B = 2798.236215 C = 3179.706653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.130 3.870 3 H 0.106 0.894 4 F -0.220 7.220 5 C -0.134 4.134 6 C -0.107 4.107 7 C -0.149 4.149 8 C -0.122 4.122 9 C -0.114 4.114 10 C -0.017 4.017 11 C 0.064 3.936 12 H 0.041 0.959 13 C -0.133 4.133 14 C -0.508 4.508 15 H 0.058 0.942 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.283 1.283 22 H 0.064 0.936 23 H 0.082 0.918 24 H 0.060 0.940 25 H 0.115 0.885 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.123 0.877 29 H 0.086 0.914 30 H 0.029 0.971 31 H 0.008 0.992 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.356 -8.428 1.530 8.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.094 3.906 3 H 0.124 0.876 4 F -0.201 7.201 5 C -0.134 4.134 6 C -0.126 4.126 7 C -0.168 4.168 8 C -0.140 4.140 9 C -0.132 4.132 10 C -0.017 4.017 11 C 0.046 3.954 12 H 0.059 0.941 13 C -0.191 4.191 14 C -0.546 4.546 15 H 0.076 0.924 16 C -0.138 4.138 17 N -0.527 5.527 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 H 0.083 0.917 23 H 0.101 0.899 24 H 0.079 0.921 25 H 0.133 0.867 26 H 0.129 0.871 27 H 0.130 0.870 28 H 0.141 0.859 29 H 0.105 0.895 30 H 0.048 0.952 31 H 0.028 0.972 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.428 -8.261 1.560 8.528 hybrid contribution 0.917 0.518 -0.215 1.075 sum -0.511 -7.743 1.345 7.876 Atomic orbital electron populations 1.22326 0.93953 1.02756 1.03705 1.20439 0.94562 0.96414 0.79200 0.87645 1.92739 1.90504 1.83758 1.53075 1.20053 1.03647 0.94441 0.95308 1.20812 0.99524 0.94067 0.98146 1.20848 1.03367 0.99265 0.93273 1.21109 1.00525 0.95033 0.97338 1.21047 0.99387 0.93709 0.99082 1.20440 0.92474 0.97696 0.91098 1.18033 0.95555 0.85172 0.96688 0.94103 1.21801 0.96157 1.03207 0.97888 1.21122 0.93582 0.91186 1.48715 0.92398 1.24944 0.95981 0.97816 0.95095 1.69881 1.22987 1.09920 1.49954 0.86528 0.83324 0.80251 0.77929 1.19721 1.20982 1.20957 0.91716 0.89929 0.92135 0.86682 0.87100 0.87037 0.85910 0.89515 0.95161 0.97247 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 9.45 37.16 0.35 -2.37 16 2 C 0.13 2.41 3.47 -27.89 -0.10 2.31 16 3 H 0.11 2.13 6.55 -51.93 -0.34 1.79 16 4 F -0.22 -4.07 16.06 2.25 0.04 -4.03 16 5 C -0.13 -2.63 5.09 -104.62 -0.53 -3.17 16 6 C -0.11 -1.90 9.40 -39.58 -0.37 -2.27 16 7 C -0.15 -2.44 10.05 -39.58 -0.40 -2.84 16 8 C -0.12 -2.07 10.05 -39.58 -0.40 -2.47 16 9 C -0.11 -2.25 8.91 -39.59 -0.35 -2.61 16 10 C -0.02 -0.36 4.73 -104.62 -0.49 -0.86 16 11 C 0.06 1.51 2.02 -92.92 -0.19 1.33 16 12 H 0.04 1.01 5.08 -51.93 -0.26 0.75 16 13 C -0.13 -3.07 8.72 37.16 0.32 -2.74 16 14 C -0.51 -13.45 8.32 -34.44 -0.29 -13.73 16 15 H 0.06 1.56 7.72 -52.49 -0.41 1.16 16 16 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 17 N -0.89 -24.32 11.32 55.43 0.63 -23.69 16 18 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.08 1.39 7.44 -51.93 -0.39 1.00 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.12 1.86 7.45 -52.49 -0.39 1.47 16 26 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 27 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 28 H 0.12 2.41 7.26 -52.49 -0.38 2.03 16 29 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 30 H 0.03 0.67 7.11 -51.93 -0.37 0.30 16 31 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 267.27 15.07 4.03 4.03 Total: -1.00 -27.30 267.27 -6.97 -34.27 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -4.10 Total: 1.41 kcal Atomic # 6 Polarization: -25.29 SS G_CDS: -2.54 Total: -27.83 kcal Atomic # 7 Polarization: -24.32 SS G_CDS: 0.63 Total: -23.69 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.04 Total: -4.03 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.30 -6.97 -34.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259930423.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.017 kcal (2) G-P(sol) polarization free energy of solvation -27.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds