Wall clock time and date at job start Mon Mar 30 2020 03:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 11 11 N 1.46902 * 109.47072 * 59.99845 * 9 7 2 12 12 C 1.50703 * 109.46925 * 179.97438 * 9 7 2 13 13 N 1.34047 * 126.88837 * 285.02119 * 12 9 7 14 14 N 1.28859 * 108.94530 * 179.97438 * 13 12 9 15 15 N 1.28313 * 110.13498 * 359.96507 * 14 13 12 16 16 C 1.34479 * 126.88652 * 104.71349 * 12 9 7 17 17 C 1.50601 * 128.61417 * 0.76727 * 16 12 9 18 18 C 1.53503 * 108.18088 * 164.00025 * 17 16 12 19 19 C 1.53149 * 109.14957 * 48.04858 * 18 17 16 20 20 C 1.46660 * 127.82807 * 180.13633 * 15 14 13 21 21 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 22 22 H 1.00903 * 110.99961 * 59.99933 * 11 9 7 23 23 H 1.00891 * 110.99940 * 183.95812 * 11 9 7 24 24 H 1.08998 * 109.89382 * 44.22092 * 17 16 12 25 25 H 1.08998 * 109.51659 * 283.56611 * 17 16 12 26 26 H 1.09004 * 109.52566 * 288.14799 * 18 17 16 27 27 H 1.09002 * 109.57979 * 167.98157 * 18 17 16 28 28 H 1.08998 * 109.44022 * 170.47900 * 19 18 17 29 29 H 1.09000 * 109.44047 * 50.59523 * 19 18 17 30 30 H 1.09000 * 109.58370 * 282.27626 * 20 15 14 31 31 H 1.08990 * 109.58805 * 42.55901 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8752 -0.6796 -0.8894 11 7 4.0008 -0.5023 1.2001 12 6 4.0139 -2.6149 -0.0001 13 7 4.0198 -3.4663 1.0352 14 7 4.5250 -4.5879 0.6516 15 7 4.8542 -4.5235 -0.5869 16 6 4.5410 -3.2846 -1.0403 17 6 4.7794 -2.8004 -2.4463 18 6 5.7482 -3.7747 -3.1307 19 6 5.2712 -5.2099 -2.8895 20 6 5.4572 -5.5745 -1.4132 21 1 -0.4850 0.8400 -0.0004 22 1 3.6769 -0.9604 2.0388 23 1 5.0073 -0.4321 1.1920 24 1 5.2154 -1.8016 -2.4257 25 1 3.8344 -2.7789 -2.9892 26 1 6.7473 -3.6480 -2.7137 27 1 5.7723 -3.5740 -4.2018 28 1 5.8519 -5.8940 -3.5082 29 1 4.2164 -5.2906 -3.1522 30 1 6.5210 -5.6510 -1.1879 31 1 4.9703 -6.5272 -1.2054 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259947084.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:10 Heat of formation + Delta-G solvation = 87.691447 kcal Electronic energy + Delta-G solvation = -15391.749626 eV Core-core repulsion = 12902.784282 eV Total energy + Delta-G solvation = -2488.965345 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.118 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.82616 -37.02517 -35.21534 -32.62707 -31.51965 -30.73868 -28.56508 -26.24160 -24.40212 -22.86840 -22.57994 -19.86349 -19.29638 -16.82875 -16.42640 -16.19158 -14.88318 -14.54153 -14.31819 -14.15557 -14.00176 -13.70041 -13.30151 -12.28676 -12.17755 -12.02695 -11.47343 -11.24244 -11.16809 -10.83667 -10.64427 -10.57451 -10.13504 -9.82209 -9.37222 -9.16555 -8.47886 -8.22084 -7.65474 -5.94421 -4.03933 2.13000 2.74010 3.29241 3.59759 3.66061 3.78108 4.28229 4.48668 4.59658 4.69761 4.80142 5.03944 5.18916 5.27323 5.36815 5.44916 5.48713 5.66284 5.76087 5.89487 6.01605 6.11199 6.11924 6.34466 6.89177 7.01340 7.14112 7.61345 8.24509 8.38471 8.77544 9.06124 9.17442 9.67495 11.15424 Molecular weight = 222.12amu Principal moments of inertia in cm(-1) A = 0.038717 B = 0.008909 C = 0.008355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.014597 B = 3142.293247 C = 3350.501271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.081 3.919 3 Si 0.937 3.063 4 H -0.279 1.279 5 H -0.319 1.319 6 H -0.274 1.274 7 C -0.510 4.510 8 H 0.069 0.931 9 C 0.264 3.736 10 H 0.055 0.945 11 N -0.835 5.835 12 C 0.003 3.997 13 N -0.265 5.265 14 N -0.106 5.106 15 N -0.299 5.299 16 C -0.034 4.034 17 C -0.044 4.044 18 C -0.125 4.125 19 C -0.136 4.136 20 C 0.119 3.881 21 H 0.263 0.737 22 H 0.344 0.656 23 H 0.308 0.692 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.528 -8.171 -8.123 17.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.123 4.123 3 Si 0.769 3.231 4 H -0.205 1.205 5 H -0.249 1.249 6 H -0.200 1.200 7 C -0.549 4.549 8 H 0.087 0.913 9 C 0.152 3.848 10 H 0.073 0.927 11 N -0.363 5.363 12 C -0.137 4.137 13 N -0.131 5.131 14 N -0.084 5.084 15 N -0.095 5.095 16 C -0.165 4.165 17 C -0.083 4.083 18 C -0.163 4.163 19 C -0.174 4.174 20 C -0.002 4.002 21 H 0.073 0.927 22 H 0.158 0.842 23 H 0.119 0.881 24 H 0.109 0.891 25 H 0.109 0.891 26 H 0.085 0.915 27 H 0.098 0.902 28 H 0.109 0.891 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.919 -8.382 -7.082 16.950 hybrid contribution 0.858 0.224 -0.668 1.110 sum 13.777 -8.157 -7.749 17.788 Atomic orbital electron populations 1.69961 1.06787 1.27270 1.49736 1.24998 0.94626 0.99975 0.92683 0.85863 0.78262 0.80774 0.78176 1.20545 1.24872 1.19979 1.20683 0.87113 0.94535 1.52574 0.91307 1.18126 0.96251 0.79716 0.90689 0.92701 1.59391 1.12710 1.57639 1.06603 1.23249 1.00514 1.01107 0.88802 1.75138 1.15281 0.96510 1.26199 1.78087 1.16693 1.19547 0.94057 1.47192 1.42240 1.11233 1.08870 1.21707 1.08718 0.86878 0.99221 1.20213 1.00587 0.99131 0.88411 1.21703 0.99254 0.93777 1.01552 1.21940 1.03691 0.98274 0.93538 1.22024 0.98965 0.89517 0.89721 0.92746 0.84206 0.88138 0.89135 0.89123 0.91492 0.90185 0.89092 0.90270 0.89176 0.88350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.17 13.96 55.43 0.77 -27.40 16 2 C 0.08 2.39 5.47 -17.82 -0.10 2.29 16 3 Si 0.94 23.94 26.03 -169.99 -4.42 19.51 16 4 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.32 -8.17 7.11 56.52 0.40 -7.77 16 6 H -0.27 -6.64 6.54 56.52 0.37 -6.27 16 7 C -0.51 -14.75 9.29 -34.44 -0.32 -15.07 16 8 H 0.07 2.24 7.98 -52.49 -0.42 1.82 16 9 C 0.26 6.33 2.54 -70.01 -0.18 6.15 16 10 H 0.06 1.29 6.65 -51.93 -0.35 0.94 16 11 N -0.83 -18.79 6.75 -6.65 -0.04 -18.83 16 12 C 0.00 0.06 5.98 -82.95 -0.50 -0.44 16 13 N -0.26 -6.15 12.35 33.18 0.41 -5.74 16 14 N -0.11 -2.19 13.23 60.35 0.80 -1.39 16 15 N -0.30 -5.07 3.77 -57.02 -0.21 -5.29 16 16 C -0.03 -0.63 6.61 -82.31 -0.54 -1.18 16 17 C -0.04 -0.61 5.90 -27.67 -0.16 -0.78 16 18 C -0.13 -1.19 5.98 -26.39 -0.16 -1.35 16 19 C -0.14 -1.18 5.91 -26.55 -0.16 -1.34 16 20 C 0.12 1.29 7.23 -3.85 -0.03 1.27 16 21 H 0.26 7.73 8.31 -40.82 -0.34 7.40 16 22 H 0.34 7.93 8.92 -39.29 -0.35 7.58 16 23 H 0.31 6.01 9.06 -39.30 -0.36 5.65 16 24 H 0.09 1.21 7.92 -51.93 -0.41 0.80 16 25 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 26 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.77 8.12 -51.93 -0.42 0.35 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 257.54 15.07 3.88 3.88 Total: -1.00 -34.85 257.54 -4.97 -39.82 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -4.01 Total: 5.88 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -2.14 Total: -10.45 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: 1.72 Total: -58.64 kcal Atomic # 14 Polarization: 23.94 SS G_CDS: -4.42 Total: 19.51 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -34.85 -4.97 -39.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259947084.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.509 kcal (2) G-P(sol) polarization free energy of solvation -34.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds