Wall clock time and date at job start Mon Mar 30 2020 03:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 11 11 N 1.46902 * 109.47072 * 59.99845 * 9 7 2 12 12 C 1.50703 * 109.46925 * 179.97438 * 9 7 2 13 13 N 1.34047 * 126.88837 * 285.02119 * 12 9 7 14 14 N 1.28859 * 108.94530 * 179.97438 * 13 12 9 15 15 N 1.28313 * 110.13498 * 359.96507 * 14 13 12 16 16 C 1.34479 * 126.88652 * 104.71349 * 12 9 7 17 17 C 1.50601 * 128.61417 * 0.76727 * 16 12 9 18 18 C 1.53503 * 108.18088 * 164.00025 * 17 16 12 19 19 C 1.53149 * 109.14957 * 48.04858 * 18 17 16 20 20 C 1.46660 * 127.82807 * 180.13633 * 15 14 13 21 21 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 22 22 H 1.00903 * 110.99961 * 59.99933 * 11 9 7 23 23 H 1.00891 * 110.99940 * 183.95812 * 11 9 7 24 24 H 1.08998 * 109.89382 * 44.22092 * 17 16 12 25 25 H 1.08998 * 109.51659 * 283.56611 * 17 16 12 26 26 H 1.09004 * 109.52566 * 288.14799 * 18 17 16 27 27 H 1.09002 * 109.57979 * 167.98157 * 18 17 16 28 28 H 1.08998 * 109.44022 * 170.47900 * 19 18 17 29 29 H 1.09000 * 109.44047 * 50.59523 * 19 18 17 30 30 H 1.09000 * 109.58370 * 282.27626 * 20 15 14 31 31 H 1.08990 * 109.58805 * 42.55901 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8752 -0.6796 -0.8894 11 7 4.0008 -0.5023 1.2001 12 6 4.0139 -2.6149 -0.0001 13 7 4.0198 -3.4663 1.0352 14 7 4.5250 -4.5879 0.6516 15 7 4.8542 -4.5235 -0.5869 16 6 4.5410 -3.2846 -1.0403 17 6 4.7794 -2.8004 -2.4463 18 6 5.7482 -3.7747 -3.1307 19 6 5.2712 -5.2099 -2.8895 20 6 5.4572 -5.5745 -1.4132 21 1 -0.4850 0.8400 -0.0004 22 1 3.6769 -0.9604 2.0388 23 1 5.0073 -0.4321 1.1920 24 1 5.2154 -1.8016 -2.4257 25 1 3.8344 -2.7789 -2.9892 26 1 6.7473 -3.6480 -2.7137 27 1 5.7723 -3.5740 -4.2018 28 1 5.8519 -5.8940 -3.5082 29 1 4.2164 -5.2906 -3.1522 30 1 6.5210 -5.6510 -1.1879 31 1 4.9703 -6.5272 -1.2054 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259947084.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:10 Heat of formation + Delta-G solvation = 59.436077 kcal Electronic energy + Delta-G solvation = -15392.974871 eV Core-core repulsion = 12902.784282 eV Total energy + Delta-G solvation = -2490.190589 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.118 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.28781 -38.06521 -36.99520 -34.33505 -33.38082 -31.96027 -29.88692 -28.29932 -25.41355 -24.69668 -23.70960 -21.55946 -20.37060 -18.95483 -17.80137 -17.52053 -16.60533 -16.16439 -15.73171 -15.32626 -15.14473 -15.05711 -14.58464 -14.26143 -13.84221 -13.22315 -12.96770 -12.68465 -12.61663 -12.07074 -11.99557 -11.77809 -11.73042 -11.66407 -11.42287 -10.74610 -10.72259 -9.81889 -9.44769 -8.22679 -6.36881 0.69631 1.53457 1.56951 1.62815 1.65479 1.75965 2.55716 3.11247 3.36774 3.54708 3.73994 3.83789 3.98789 4.17809 4.21082 4.33786 4.46993 4.55275 4.69693 4.82735 4.94585 5.05765 5.11174 5.22048 5.26714 5.30559 5.52336 5.85729 6.12412 6.42230 6.71784 6.95233 7.38347 7.62327 8.91554 Molecular weight = 222.12amu Principal moments of inertia in cm(-1) A = 0.038717 B = 0.008909 C = 0.008355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.014597 B = 3142.293247 C = 3350.501271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.025 3.975 3 Si 1.006 2.994 4 H -0.281 1.281 5 H -0.319 1.319 6 H -0.248 1.248 7 C -0.511 4.511 8 H 0.013 0.987 9 C 0.274 3.726 10 H 0.068 0.932 11 N -0.835 5.835 12 C -0.039 4.039 13 N -0.307 5.307 14 N -0.126 5.126 15 N -0.285 5.285 16 C -0.021 4.021 17 C -0.051 4.051 18 C -0.117 4.117 19 C -0.131 4.131 20 C 0.101 3.899 21 H 0.266 0.734 22 H 0.339 0.661 23 H 0.330 0.670 24 H 0.097 0.903 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.109 0.891 28 H 0.135 0.865 29 H 0.066 0.934 30 H 0.119 0.881 31 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.523 -8.369 -10.107 21.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.173 4.173 3 Si 0.835 3.165 4 H -0.207 1.207 5 H -0.249 1.249 6 H -0.172 1.172 7 C -0.550 4.550 8 H 0.031 0.969 9 C 0.162 3.838 10 H 0.085 0.915 11 N -0.364 5.364 12 C -0.179 4.179 13 N -0.173 5.173 14 N -0.104 5.104 15 N -0.081 5.081 16 C -0.153 4.153 17 C -0.090 4.090 18 C -0.155 4.155 19 C -0.169 4.169 20 C -0.018 4.018 21 H 0.074 0.926 22 H 0.152 0.848 23 H 0.142 0.858 24 H 0.116 0.884 25 H 0.103 0.897 26 H 0.096 0.904 27 H 0.127 0.873 28 H 0.153 0.847 29 H 0.085 0.915 30 H 0.137 0.863 31 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 15.953 -8.629 -9.075 20.281 hybrid contribution -0.075 0.112 -0.090 0.162 sum 15.879 -8.517 -9.165 20.215 Atomic orbital electron populations 1.70100 1.08760 1.28331 1.51819 1.25925 0.95284 1.03837 0.92278 0.84770 0.77791 0.75803 0.78166 1.20746 1.24875 1.17176 1.20831 0.90036 0.92244 1.51899 0.96880 1.17769 0.92931 0.81629 0.91452 0.91482 1.59170 1.14346 1.57144 1.05765 1.23069 1.03381 1.00984 0.90465 1.75039 1.16913 0.97566 1.27801 1.77945 1.17614 1.18806 0.96033 1.47692 1.40348 1.11977 1.08127 1.22237 1.06172 0.86759 1.00171 1.20479 1.01779 1.00877 0.85913 1.21723 0.98198 0.92741 1.02816 1.22018 1.03790 0.98849 0.92208 1.22725 1.00350 0.88400 0.90310 0.92556 0.84798 0.85780 0.88448 0.89744 0.90378 0.87257 0.84650 0.91538 0.86293 0.87047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.51 13.96 21.45 0.30 -61.21 16 2 C 0.03 1.52 5.47 84.65 0.46 1.99 16 3 Si 1.01 49.30 26.03 68.60 1.79 51.09 16 4 H -0.28 -13.82 7.11 99.48 0.71 -13.12 16 5 H -0.32 -15.52 7.11 99.48 0.71 -14.81 16 6 H -0.25 -10.96 6.54 99.48 0.65 -10.31 16 7 C -0.51 -30.58 9.29 25.60 0.24 -30.34 16 8 H 0.01 0.89 7.98 -2.92 -0.02 0.87 16 9 C 0.27 13.15 2.54 43.43 0.11 13.26 16 10 H 0.07 3.04 6.65 -2.39 -0.02 3.02 16 11 N -0.84 -36.94 6.75 -174.94 -1.18 -38.12 16 12 C -0.04 -1.73 5.98 41.36 0.25 -1.49 16 13 N -0.31 -14.60 12.35 -48.94 -0.60 -15.21 16 14 N -0.13 -5.20 13.23 37.02 0.49 -4.71 16 15 N -0.28 -9.24 3.77 -334.30 -1.26 -10.50 16 16 C -0.02 -0.74 6.61 41.09 0.27 -0.46 16 17 C -0.05 -1.30 5.90 29.99 0.18 -1.12 16 18 C -0.12 -1.70 5.98 30.81 0.18 -1.52 16 19 C -0.13 -1.69 5.91 30.71 0.18 -1.51 16 20 C 0.10 1.84 7.23 86.42 0.62 2.47 16 21 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 22 H 0.34 15.78 8.92 -89.69 -0.80 14.98 16 23 H 0.33 12.30 9.06 -89.70 -0.81 11.49 16 24 H 0.10 2.33 7.92 -2.39 -0.02 2.31 16 25 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.08 1.02 8.12 -2.38 -0.02 1.00 16 27 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.14 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 1.07 8.12 -2.39 -0.02 1.05 16 30 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -79.90 257.54 1.51 -78.38 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -0.51 Total: 19.02 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: 2.50 Total: -18.72 kcal Atomic # 7 Polarization: -127.51 SS G_CDS: -2.26 Total: -129.76 kcal Atomic # 14 Polarization: 49.30 SS G_CDS: 1.79 Total: 51.09 kcal Total: -79.90 1.51 -78.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259947084.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.818 kcal (2) G-P(sol) polarization free energy of solvation -79.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds