Wall clock time and date at job start Mon Mar 30 2020 03:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 N 1.31069 * 126.65585 * 269.68308 * 10 9 7 12 12 N 1.28839 * 107.98928 * 179.89960 * 11 10 9 13 13 N 1.28744 * 109.39767 * 0.37536 * 12 11 10 14 14 N 1.29015 * 108.80363 * 359.77005 * 13 12 11 15 15 C 1.46501 * 126.43541 * 180.02562 * 14 13 12 16 16 C 1.53004 * 109.46845 * 269.96873 * 15 14 13 17 17 C 1.53774 * 113.61719 * 272.49696 * 16 15 14 18 18 C 1.53781 * 87.08161 * 220.01985 * 17 16 15 19 19 C 1.53780 * 87.08158 * 25.43392 * 18 17 16 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.09000 * 109.47654 * 29.97192 * 15 14 13 24 24 H 1.08997 * 109.47237 * 149.97371 * 15 14 13 25 25 H 1.09003 * 112.84691 * 43.80922 * 16 15 14 26 26 H 1.08999 * 113.61610 * 334.56538 * 17 16 15 27 27 H 1.08995 * 113.61419 * 105.47082 * 17 16 15 28 28 H 1.08995 * 113.61321 * 270.88318 * 18 17 16 29 29 H 1.09001 * 113.61450 * 139.98332 * 18 17 16 30 30 H 1.09001 * 113.61471 * 220.01884 * 19 18 17 31 31 H 1.09001 * 113.69391 * 89.12860 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 7 2.7344 -4.2385 -1.0644 12 7 3.5309 -5.1652 -0.6562 13 7 3.5419 -5.1831 0.6311 14 7 2.7523 -4.2603 1.0666 15 6 2.4764 -3.9420 2.4697 16 6 1.2831 -4.7677 2.9549 17 6 -0.0765 -4.0998 2.6900 18 6 -0.5055 -4.6029 4.0784 19 6 0.9857 -4.5983 4.4541 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 3.3518 -4.1782 3.0749 24 1 2.2459 -2.8808 2.5630 25 1 1.3300 -5.8083 2.6338 26 1 -0.0225 -3.0137 2.6167 27 1 -0.6333 -4.5533 1.8701 28 1 -0.9491 -5.5984 4.0642 29 1 -1.0994 -3.8817 4.6398 30 1 1.2864 -5.4543 5.0583 31 1 1.3314 -3.6491 4.8634 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260000598.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:00 Heat of formation + Delta-G solvation = 117.489821 kcal Electronic energy + Delta-G solvation = -15235.325844 eV Core-core repulsion = 12747.652654 eV Total energy + Delta-G solvation = -2487.673190 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.118 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.30596 -38.93212 -34.72141 -33.82242 -31.88852 -29.23164 -27.98872 -25.61312 -24.20262 -23.59322 -22.18157 -20.74347 -19.42772 -17.01413 -16.79267 -15.96064 -15.37441 -14.89617 -14.49552 -13.84213 -13.55984 -12.64435 -12.52306 -12.30471 -12.18225 -11.74748 -11.54833 -11.36890 -11.00890 -10.95507 -10.72876 -10.46126 -10.37953 -10.19835 -10.10120 -9.91483 -9.84657 -8.87791 -8.64918 -6.29093 -4.34982 2.08913 2.73867 3.12104 3.20237 3.25578 3.30713 4.26472 4.48172 4.61612 4.68188 4.84040 5.03124 5.15245 5.22686 5.28746 5.45645 5.57502 5.68753 5.80934 5.88489 5.92323 6.11785 6.22814 6.32690 6.48997 6.58047 7.01256 7.10928 7.26993 7.64710 7.92888 8.66317 9.30549 9.46588 10.80668 Molecular weight = 222.12amu Principal moments of inertia in cm(-1) A = 0.021612 B = 0.010471 C = 0.007979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.279062 B = 2673.406854 C = 3508.193258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.069 3.931 3 Si 0.901 3.099 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.525 4.525 8 H 0.057 0.943 9 C 0.088 3.912 10 C 0.240 3.760 11 N -0.329 5.329 12 N -0.095 5.095 13 N -0.131 5.131 14 N -0.315 5.315 15 C 0.127 3.873 16 C -0.129 4.129 17 C -0.139 4.139 18 C -0.141 4.141 19 C -0.127 4.127 20 H 0.268 0.732 21 H 0.054 0.946 22 H 0.060 0.940 23 H 0.100 0.900 24 H 0.120 0.880 25 H 0.094 0.906 26 H 0.101 0.899 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.023 -5.284 10.118 11.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.135 4.135 3 Si 0.728 3.272 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.201 1.201 7 C -0.564 4.564 8 H 0.075 0.925 9 C 0.048 3.952 10 C -0.037 4.037 11 N -0.178 5.178 12 N -0.090 5.090 13 N -0.117 5.117 14 N -0.116 5.116 15 C 0.005 3.995 16 C -0.149 4.149 17 C -0.176 4.176 18 C -0.178 4.178 19 C -0.165 4.165 20 H 0.077 0.923 21 H 0.072 0.928 22 H 0.078 0.922 23 H 0.119 0.881 24 H 0.138 0.862 25 H 0.113 0.887 26 H 0.119 0.881 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.353 -6.146 9.449 11.277 hybrid contribution 0.035 1.477 0.501 1.560 sum -0.318 -4.668 9.950 10.995 Atomic orbital electron populations 1.69913 1.05950 1.27610 1.48846 1.24910 0.94935 0.99271 0.94385 0.86504 0.79547 0.82208 0.78980 1.19895 1.20926 1.20069 1.20796 0.93041 0.89184 1.53405 0.92459 1.18189 0.90532 0.85625 1.00869 1.27273 0.98048 0.97275 0.81102 1.74995 1.10901 1.07001 1.24914 1.78402 1.14826 1.14835 1.00889 1.78618 1.13602 1.11074 1.08362 1.48383 1.30031 1.22994 1.10143 1.22220 0.99525 1.02488 0.75293 1.22986 0.94310 1.00115 0.97464 1.23161 0.95136 1.02058 0.97237 1.22781 0.96053 1.01436 0.97563 1.22867 0.96760 1.02507 0.94348 0.92268 0.92793 0.92190 0.88149 0.86233 0.88748 0.88075 0.91318 0.90463 0.91071 0.91255 0.89412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.63 13.29 55.43 0.74 -22.89 16 2 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.21 29.54 -169.99 -5.02 15.18 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.53 -13.61 9.09 -34.44 -0.31 -13.92 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.09 2.08 5.12 -29.03 -0.15 1.93 16 10 C 0.24 5.40 7.32 -155.44 -1.14 4.26 16 11 N -0.33 -7.97 12.36 32.70 0.40 -7.57 16 12 N -0.10 -2.21 13.43 60.35 0.81 -1.40 16 13 N -0.13 -2.73 13.29 60.35 0.80 -1.93 16 14 N -0.31 -6.15 3.35 -58.27 -0.19 -6.35 16 15 C 0.13 1.87 5.90 -4.04 -0.02 1.85 16 16 C -0.13 -1.65 3.96 -89.81 -0.36 -2.01 16 17 C -0.14 -1.86 6.54 -25.92 -0.17 -2.03 16 18 C -0.14 -1.49 8.08 -25.92 -0.21 -1.70 16 19 C -0.13 -1.27 7.64 -25.92 -0.20 -1.47 16 20 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 21 H 0.05 1.20 5.16 -51.93 -0.27 0.93 16 22 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 23 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 24 H 0.12 1.81 7.45 -51.93 -0.39 1.42 16 25 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 26 H 0.10 1.52 6.59 -51.93 -0.34 1.18 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.81 8.10 -51.93 -0.42 0.39 16 LS Contribution 266.03 15.07 4.01 4.01 Total: -1.00 -29.01 266.03 -5.03 -34.03 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -3.92 Total: -1.67 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -2.65 Total: -11.41 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 2.56 Total: -40.14 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.01 -5.03 -34.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260000598.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.522 kcal (2) G-P(sol) polarization free energy of solvation -29.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds