Wall clock time and date at job start Mon Mar 30 2020 02:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47309 * 2 1 4 4 C 1.52990 * 109.47181 * 120.00618 * 2 1 3 5 5 C 1.50707 * 109.47222 * 174.80040 * 4 2 1 6 6 C 1.38739 * 120.68608 * 100.01725 * 5 4 2 7 7 N 1.32025 * 119.32984 * 179.72290 * 6 5 4 8 8 C 1.33440 * 120.83746 * 0.51938 * 7 6 5 9 9 C 1.41584 * 119.25948 * 179.75551 * 8 7 6 10 10 H 1.07998 * 120.00307 * 185.24043 * 9 8 7 11 11 C 1.40064 * 119.99596 * 5.23768 * 9 8 7 12 12 N 1.30689 * 119.99879 * 184.24865 * 11 9 8 13 13 Si 1.86797 * 120.00000 * 4.52515 * 11 9 8 14 14 H 1.48497 * 109.47013 * 179.72323 * 13 11 9 15 15 H 1.48497 * 109.47435 * 299.72440 * 13 11 9 16 16 H 1.48500 * 109.47041 * 59.72610 * 13 11 9 17 17 N 1.33442 * 121.48889 * 359.46715 * 8 7 6 18 18 C 1.32388 * 120.59012 * 0.26370 * 17 8 7 19 19 O 1.35515 * 120.43459 * 180.02562 * 18 17 8 20 20 H 1.09000 * 109.46979 * 300.00014 * 1 2 3 21 21 H 1.09004 * 109.47151 * 59.98952 * 1 2 3 22 22 H 1.08997 * 109.47313 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46921 * 240.00537 * 2 1 3 24 24 H 1.09002 * 109.47104 * 185.33183 * 3 2 1 25 25 H 1.08994 * 109.47664 * 305.33607 * 3 2 1 26 26 H 1.09006 * 109.47224 * 65.33591 * 3 2 1 27 27 H 1.08995 * 109.47470 * 54.80405 * 4 2 1 28 28 H 1.09002 * 109.47633 * 294.79770 * 4 2 1 29 29 H 1.08002 * 120.33804 * 0.02562 * 6 5 4 30 30 H 0.96998 * 119.99967 * 355.24552 * 12 11 9 31 31 H 0.96701 * 113.99297 * 84.95306 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2491 5 6 3.5415 -0.8338 1.1864 6 6 4.3476 0.0460 1.8941 7 7 5.6599 -0.0803 1.8243 8 6 6.2163 -1.0345 1.0755 9 6 7.6274 -1.1364 1.0207 10 1 8.0920 -1.8479 0.3541 11 6 8.4209 -0.3145 1.8311 12 7 9.7227 -0.3493 1.7212 13 14 7.6186 0.8258 3.0743 14 1 8.6692 1.5783 3.8058 15 1 6.7274 1.7803 2.3675 16 1 6.8215 0.0251 4.0381 17 7 5.4728 -1.8983 0.3815 18 6 4.1512 -1.8275 0.4140 19 8 3.3991 -2.7067 -0.2916 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5140 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 3.1258 1.4439 -0.0955 25 1 1.6008 1.9832 -0.8383 26 1 1.7568 1.9280 0.9340 27 1 1.6027 -1.7186 1.2968 28 1 1.7547 -0.1567 2.1367 29 1 3.9060 0.8234 2.5000 30 1 10.1423 -0.9925 1.1288 31 1 3.2333 -3.5406 0.1691 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260021157.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:22 Heat of formation + Delta-G solvation = -57.891104 kcal Electronic energy + Delta-G solvation = -15161.596977 eV Core-core repulsion = 12634.025948 eV Total energy + Delta-G solvation = -2527.571029 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.58358 -38.47749 -37.31153 -35.72997 -33.72863 -32.52027 -29.44520 -27.93565 -25.91610 -24.82473 -23.09772 -21.02980 -20.70106 -19.18660 -18.45409 -17.02415 -16.33523 -15.82917 -15.42298 -15.21608 -14.99358 -14.73096 -14.45302 -14.06652 -13.56413 -12.98069 -12.96249 -12.70057 -12.63377 -12.29987 -11.90933 -11.83919 -11.70225 -11.52553 -11.42495 -10.98897 -10.59602 -9.92175 -9.56431 -9.39014 -7.05971 0.35394 0.57360 1.60931 1.67722 2.06079 2.45499 2.52307 2.85226 3.45956 3.76835 4.02049 4.06904 4.12958 4.23356 4.51187 4.56872 4.80771 4.86464 4.89472 5.02518 5.07474 5.15953 5.26014 5.29917 5.30290 5.51268 5.55150 5.63104 5.86859 5.98874 6.32398 6.69701 6.76202 7.71248 7.84067 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.040222 B = 0.008904 C = 0.007776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.967015 B = 3143.832270 C = 3600.079672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 C -0.142 4.142 4 C -0.029 4.029 5 C -0.313 4.313 6 C 0.188 3.812 7 N -0.620 5.620 8 C 0.399 3.601 9 C -0.482 4.482 10 H 0.062 0.938 11 C 0.020 3.980 12 N -0.812 5.812 13 Si 1.193 2.807 14 H -0.324 1.324 15 H -0.273 1.273 16 H -0.291 1.291 17 N -0.639 5.639 18 C 0.374 3.626 19 O -0.485 6.485 20 H 0.066 0.934 21 H 0.055 0.945 22 H 0.058 0.942 23 H 0.043 0.957 24 H 0.022 0.978 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.182 0.818 30 H 0.282 0.718 31 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.551 1.520 1.634 16.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.109 4.109 3 C -0.199 4.199 4 C -0.067 4.067 5 C -0.322 4.322 6 C 0.021 3.979 7 N -0.344 5.344 8 C 0.161 3.839 9 C -0.518 4.518 10 H 0.080 0.920 11 C -0.198 4.198 12 N -0.435 5.435 13 Si 1.023 2.977 14 H -0.257 1.257 15 H -0.201 1.201 16 H -0.219 1.219 17 N -0.370 5.370 18 C 0.182 3.818 19 O -0.294 6.294 20 H 0.085 0.915 21 H 0.074 0.926 22 H 0.077 0.923 23 H 0.062 0.938 24 H 0.042 0.958 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.199 0.801 30 H 0.093 0.907 31 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -15.142 2.895 2.149 15.565 hybrid contribution -0.362 -2.113 -1.499 2.616 sum -15.504 0.782 0.649 15.537 Atomic orbital electron populations 1.21763 0.93298 1.02096 1.02240 1.21072 0.96546 0.95750 0.97557 1.21807 0.99362 0.96418 1.02345 1.20117 0.87316 1.01063 0.98234 1.21185 0.99266 1.03946 1.07805 1.23129 0.87808 0.94643 0.92326 1.67185 1.14087 1.24984 1.28162 1.19690 0.94102 0.84359 0.85728 1.20509 0.89519 1.20055 1.21766 0.92015 1.28749 0.94058 0.98229 0.98807 1.70653 1.11080 1.29922 1.31831 0.81358 0.70210 0.74331 0.71769 1.25724 1.20086 1.21922 1.68244 1.07478 1.32588 1.28647 1.19606 0.86431 0.89528 0.86239 1.84622 1.68675 1.30712 1.45425 0.91462 0.92624 0.92284 0.93831 0.95829 0.92477 0.91108 0.90955 0.89792 0.80109 0.90658 0.72694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.19 71.98 0.66 -1.84 16 2 C -0.09 -2.26 2.91 -10.80 -0.03 -2.29 16 3 C -0.14 -3.59 8.80 71.98 0.63 -2.96 16 4 C -0.03 -0.74 4.56 29.85 0.14 -0.61 16 5 C -0.31 -11.36 4.49 -19.35 -0.09 -11.44 16 6 C 0.19 7.39 10.26 84.78 0.87 8.26 16 7 N -0.62 -30.45 4.51 -194.12 -0.87 -31.33 16 8 C 0.40 21.88 7.22 135.16 0.98 22.86 16 9 C -0.48 -28.17 9.81 23.54 0.23 -27.94 16 10 H 0.06 3.80 8.05 -2.91 -0.02 3.78 16 11 C 0.02 1.12 5.52 85.31 0.47 1.59 16 12 N -0.81 -45.25 13.65 21.84 0.30 -44.95 16 13 Si 1.19 56.29 25.58 68.60 1.75 58.05 16 14 H -0.32 -14.83 7.11 99.48 0.71 -14.12 16 15 H -0.27 -12.55 6.62 99.48 0.66 -11.89 16 16 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 17 N -0.64 -33.32 10.38 -306.99 -3.19 -36.51 16 18 C 0.37 15.78 7.81 85.00 0.66 16.44 16 19 O -0.49 -16.68 12.93 -88.17 -1.14 -17.82 16 20 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 21 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 22 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.02 0.73 7.11 -2.39 -0.02 0.71 16 25 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.07 1.68 7.93 -2.39 -0.02 1.67 16 28 H 0.08 1.80 8.04 -2.39 -0.02 1.78 16 29 H 0.18 5.53 8.06 -2.91 -0.02 5.50 16 30 H 0.28 15.36 8.72 -92.71 -0.81 14.56 16 31 H 0.41 9.81 9.06 -74.06 -0.67 9.14 16 Total: -1.00 -66.85 264.27 1.75 -65.10 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: 0.37 Total: 5.39 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 4.52 Total: 2.06 kcal Atomic # 7 Polarization: -109.02 SS G_CDS: -3.76 Total: -112.78 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -1.14 Total: -17.82 kcal Atomic # 14 Polarization: 56.29 SS G_CDS: 1.75 Total: 58.05 kcal Total: -66.85 1.75 -65.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260021157.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.213 kcal (2) G-P(sol) polarization free energy of solvation -66.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds