Wall clock time and date at job start Mon Mar 30 2020 03:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35679 * 117.00805 * 2 1 4 4 N 1.32279 * 119.67539 * 0.24737 * 3 2 1 5 5 C 1.31940 * 121.64337 * 180.28791 * 4 3 2 6 6 C 1.38092 * 120.83051 * 359.72458 * 5 4 3 7 7 C 1.38775 * 119.28898 * 0.02562 * 6 5 4 8 8 C 1.38422 * 118.48885 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.44524 * 179.97438 * 8 7 6 10 10 H 1.09004 * 109.47052 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.46665 * 60.00353 * 9 8 7 12 12 H 1.07994 * 120.00027 * 275.07746 * 11 9 8 13 13 C 1.37882 * 119.99892 * 95.08745 * 11 9 8 14 14 N 1.31507 * 119.99937 * 5.64438 * 13 11 9 15 15 Si 1.86797 * 119.99652 * 185.64635 * 13 11 9 16 16 H 1.48496 * 109.47387 * 59.99814 * 15 13 11 17 17 H 1.48503 * 109.47017 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.46998 * 299.99635 * 15 13 11 19 19 C 1.52994 * 109.47260 * 300.00354 * 9 8 7 20 20 N 1.46909 * 109.46926 * 185.34180 * 19 9 8 21 21 H 1.08993 * 109.47437 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46938 * 300.00549 * 1 2 3 23 23 H 1.09004 * 109.47010 * 59.99448 * 1 2 3 24 24 H 1.07999 * 119.58217 * 179.70752 * 5 4 3 25 25 H 1.08006 * 120.35350 * 180.02562 * 6 5 4 26 26 H 1.08006 * 120.75950 * 179.97438 * 7 6 5 27 27 H 0.97005 * 119.99907 * 180.02562 * 14 13 11 28 28 H 1.08994 * 109.47456 * 65.34253 * 19 9 8 29 29 H 1.09004 * 109.46953 * 305.33831 * 19 9 8 30 30 H 1.00902 * 110.99598 * 56.04569 * 20 19 9 31 31 H 1.00903 * 110.99962 * 179.97438 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2088 0.0000 4 7 1.3186 2.3142 0.0050 5 6 1.8770 3.5096 -0.0005 6 6 3.2508 3.6489 -0.0060 7 6 4.0484 2.5133 -0.0062 8 6 3.4323 1.2738 -0.0004 9 6 4.2558 0.0117 -0.0010 10 1 3.5937 -0.8542 0.0045 11 6 5.1307 -0.0178 1.2257 12 1 6.0868 0.4844 1.2192 13 6 4.7106 -0.6860 2.3562 14 7 3.6000 -1.3898 2.3294 15 14 5.7189 -0.5914 3.9259 16 1 5.8223 0.8240 4.3633 17 1 5.0575 -1.3912 4.9880 18 1 7.0788 -1.1323 3.6740 19 6 5.1329 -0.0244 -1.2540 20 7 5.8396 -1.3106 -1.3202 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.2517 4.3902 -0.0010 25 1 3.6998 4.6313 -0.0100 26 1 5.1254 2.5947 -0.0109 27 1 3.3043 -1.8596 3.1249 28 1 5.8591 0.7874 -1.2127 29 1 4.5073 0.0924 -2.1390 30 1 5.1896 -2.0820 -1.2945 31 1 6.4259 -1.3594 -2.1400 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260067225.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:26 Heat of formation + Delta-G solvation = -27.737963 kcal Electronic energy + Delta-G solvation = -15401.940485 eV Core-core repulsion = 12875.676994 eV Total energy + Delta-G solvation = -2526.263490 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.36832 -38.55850 -37.07929 -34.14946 -33.24433 -31.75802 -29.18636 -27.89971 -26.12949 -24.24291 -23.46804 -21.45167 -19.08445 -18.52208 -17.64096 -16.74924 -16.68596 -16.49865 -15.76549 -15.32526 -14.89602 -14.63690 -14.27287 -14.09273 -13.93335 -13.54494 -12.89084 -12.67376 -12.64023 -12.44171 -12.15108 -11.96974 -11.54739 -11.11482 -10.47544 -10.34618 -10.25397 -9.25820 -8.97927 -7.97511 -6.03077 0.53316 0.58978 1.43426 1.44672 1.50715 2.47779 2.51602 3.08873 3.31645 3.64151 4.01824 4.20072 4.36817 4.47333 4.48510 4.55371 4.62779 4.64686 4.72972 4.78148 5.14075 5.25428 5.34365 5.55184 5.80873 5.84519 6.01901 6.36492 6.54709 6.63540 6.90729 7.07282 7.12995 7.57963 9.08144 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.021701 B = 0.011378 C = 0.010892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.979284 B = 2460.356995 C = 2570.004275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.314 6.314 3 C 0.284 3.716 4 N -0.560 5.560 5 C 0.098 3.902 6 C -0.203 4.203 7 C -0.058 4.058 8 C -0.122 4.122 9 C 0.073 3.927 10 H 0.043 0.957 11 C -0.483 4.483 12 H 0.049 0.951 13 C 0.016 3.984 14 N -0.911 5.911 15 Si 0.940 3.060 16 H -0.275 1.275 17 H -0.292 1.292 18 H -0.272 1.272 19 C 0.090 3.910 20 N -0.840 5.840 21 H 0.107 0.893 22 H 0.044 0.956 23 H 0.059 0.941 24 H 0.187 0.813 25 H 0.167 0.833 26 H 0.140 0.860 27 H 0.253 0.747 28 H 0.060 0.940 29 H 0.001 0.999 30 H 0.335 0.665 31 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.416 7.137 -6.316 9.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.220 6.220 3 C 0.107 3.893 4 N -0.284 5.284 5 C -0.058 4.058 6 C -0.223 4.223 7 C -0.084 4.084 8 C -0.125 4.125 9 C 0.054 3.946 10 H 0.061 0.939 11 C -0.521 4.521 12 H 0.068 0.932 13 C -0.183 4.183 14 N -0.550 5.550 15 Si 0.767 3.233 16 H -0.201 1.201 17 H -0.218 1.218 18 H -0.197 1.197 19 C -0.041 4.041 20 N -0.369 5.369 21 H 0.125 0.875 22 H 0.063 0.937 23 H 0.078 0.922 24 H 0.204 0.796 25 H 0.184 0.816 26 H 0.157 0.843 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.019 0.981 30 H 0.147 0.853 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.995 6.884 -5.512 9.313 hybrid contribution 0.418 -0.274 0.251 0.560 sum -2.576 6.611 -5.260 8.832 Atomic orbital electron populations 1.22845 0.77537 1.03405 1.01367 1.86388 1.22902 1.24901 1.87854 1.19940 0.89823 0.84630 0.94938 1.67235 1.41515 0.99410 1.20255 1.22820 0.93774 0.93581 0.95585 1.22241 0.94691 1.00135 1.05264 1.21455 1.01037 0.90919 0.94955 1.20839 0.91242 0.99238 1.01217 1.17732 0.92964 0.90884 0.93038 0.93906 1.20972 1.02437 1.31759 0.96965 0.93231 1.25616 0.96100 0.95141 1.01467 1.70106 1.23859 1.32147 1.28861 0.85894 0.79297 0.77826 0.80258 1.20063 1.21782 1.19734 1.21683 0.95295 0.91848 0.95259 1.58435 1.27719 1.03894 1.46899 0.87504 0.93740 0.92240 0.79606 0.81593 0.84267 0.93765 0.92168 0.98054 0.85255 0.84799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.55 10.38 113.37 1.18 2.73 16 2 O -0.31 -14.66 9.26 -89.97 -0.83 -15.50 16 3 C 0.28 13.03 7.47 84.78 0.63 13.66 16 4 N -0.56 -22.31 9.22 -308.93 -2.85 -25.15 16 5 C 0.10 3.12 11.18 84.64 0.95 4.07 16 6 C -0.20 -6.29 10.11 22.36 0.23 -6.07 16 7 C -0.06 -2.24 9.03 22.44 0.20 -2.03 16 8 C -0.12 -5.59 4.79 -19.67 -0.09 -5.68 16 9 C 0.07 3.65 2.23 -12.29 -0.03 3.62 16 10 H 0.04 2.44 6.11 -2.39 -0.01 2.43 16 11 C -0.48 -26.25 7.69 25.60 0.20 -26.05 16 12 H 0.05 2.67 7.82 -2.91 -0.02 2.65 16 13 C 0.02 0.88 5.45 84.66 0.46 1.34 16 14 N -0.91 -54.22 12.76 21.45 0.27 -53.94 16 15 Si 0.94 45.05 29.54 68.60 2.03 47.08 16 16 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 17 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 18 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 19 C 0.09 3.74 5.90 86.30 0.51 4.25 16 20 N -0.84 -32.75 9.35 -186.71 -1.75 -34.50 16 21 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 22 H 0.04 1.58 8.10 -2.38 -0.02 1.56 16 23 H 0.06 1.89 8.11 -2.39 -0.02 1.87 16 24 H 0.19 4.22 8.06 -2.91 -0.02 4.19 16 25 H 0.17 3.63 8.06 -2.91 -0.02 3.61 16 26 H 0.14 4.98 7.73 -2.91 -0.02 4.96 16 27 H 0.25 14.65 8.31 -92.70 -0.77 13.88 16 28 H 0.06 2.39 7.66 -2.39 -0.02 2.37 16 29 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.34 13.28 8.99 -89.69 -0.81 12.47 16 31 H 0.34 10.55 9.08 -89.69 -0.81 9.73 16 Total: -1.00 -67.23 269.97 0.63 -66.60 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: -0.47 Total: 25.58 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: 4.23 Total: -10.16 kcal Atomic # 7 Polarization: -109.28 SS G_CDS: -4.32 Total: -113.60 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.83 Total: -15.50 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -67.23 0.63 -66.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260067225.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.863 kcal (2) G-P(sol) polarization free energy of solvation -67.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds