Wall clock time and date at job start Mon Mar 30 2020 02:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47606 * 2 1 4 4 F 1.39898 * 109.47039 * 239.99657 * 2 1 3 5 5 C 1.50706 * 109.47019 * 119.99859 * 2 1 3 6 6 C 1.38228 * 119.99983 * 65.21250 * 5 2 1 7 7 C 1.38238 * 120.00110 * 180.21781 * 6 5 2 8 8 C 1.38234 * 119.99675 * 359.52133 * 7 6 5 9 9 C 1.50702 * 120.00257 * 180.25732 * 8 7 6 10 10 C 1.53004 * 109.46774 * 90.00005 * 9 8 7 11 11 C 1.50702 * 109.47154 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99881 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00173 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99956 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 120.00182 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47180 * 89.99437 * 15 13 11 17 17 H 1.48493 * 109.47476 * 209.99833 * 15 13 11 18 18 H 1.48506 * 109.46985 * 330.00044 * 15 13 11 19 19 C 1.38235 * 120.00220 * 0.28720 * 8 7 6 20 20 C 1.38234 * 119.99892 * 244.99470 * 5 2 1 21 21 H 1.09003 * 109.47041 * 300.00466 * 1 2 3 22 22 H 1.08997 * 109.46890 * 60.00123 * 1 2 3 23 23 H 1.09001 * 109.47371 * 180.02562 * 1 2 3 24 24 H 1.08004 * 120.00281 * 0.02562 * 6 5 2 25 25 H 1.08002 * 120.00519 * 179.80752 * 7 6 5 26 26 H 1.08993 * 109.47429 * 210.00613 * 9 8 7 27 27 H 1.08998 * 109.46961 * 330.00864 * 9 8 7 28 28 H 1.08993 * 109.47638 * 300.00479 * 10 9 8 29 29 H 1.09003 * 109.47116 * 60.00528 * 10 9 8 30 30 H 0.97004 * 119.99932 * 180.02562 * 14 13 11 31 31 H 1.07996 * 120.00471 * 179.97438 * 19 8 7 32 32 H 1.08001 * 120.00324 * 0.02562 * 20 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 9 1.9963 -0.6596 -1.1422 5 6 2.0323 -0.7104 1.2305 6 6 1.7895 -2.0611 1.3964 7 6 2.2463 -2.7117 2.5272 8 6 2.9546 -2.0138 3.4875 9 6 3.4577 -2.7243 4.7176 10 6 4.8600 -3.2750 4.4507 11 6 5.3635 -3.9850 5.6809 12 1 4.7449 -4.0385 6.5647 13 6 6.6137 -4.5663 5.6784 14 7 7.0528 -5.1863 6.7518 15 14 7.6838 -4.4733 4.1501 16 1 8.5251 -3.2510 4.2086 17 1 8.5570 -5.6725 4.0835 18 1 6.8200 -4.4222 2.9433 19 6 3.2008 -0.6640 3.3198 20 6 2.7398 -0.0123 2.1912 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.2401 -2.6074 0.6439 25 1 2.0540 -3.7664 2.6583 26 1 3.4950 -2.0241 5.5520 27 1 2.7852 -3.5463 4.9629 28 1 4.8227 -3.9753 3.6163 29 1 5.5325 -2.4531 4.2053 30 1 7.9325 -5.5950 6.7501 31 1 3.7538 -0.1186 4.0702 32 1 2.9322 1.0424 2.0602 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260073806.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:03 Heat of formation + Delta-G solvation = -51.343763 kcal Electronic energy + Delta-G solvation = -14317.042708 eV Core-core repulsion = 11769.835632 eV Total energy + Delta-G solvation = -2547.207076 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.112 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -47.70459 -39.20383 -34.76134 -32.90870 -31.37002 -30.74738 -28.77739 -25.52320 -23.17727 -22.43719 -20.99436 -19.93765 -16.98852 -16.63305 -16.42791 -15.15114 -14.95494 -14.63043 -14.25442 -13.93531 -13.30412 -13.06848 -12.82068 -12.74887 -12.47123 -12.32311 -11.91920 -11.46017 -11.23278 -10.97132 -10.72456 -10.70817 -10.14654 -9.89629 -9.70982 -9.20725 -8.71957 -8.54531 -8.27326 -6.05746 -4.04253 1.48919 1.61376 3.31180 3.38759 3.44170 3.93239 4.38195 4.45031 4.53821 4.70001 4.98079 5.12580 5.17348 5.28774 5.36565 5.44454 5.59613 5.73419 5.81601 5.90417 6.05409 6.13918 6.34657 6.43212 6.62669 6.65890 6.78145 6.94642 7.21602 7.27423 7.42153 7.76916 8.51259 8.98541 9.56806 11.07541 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.046418 B = 0.005700 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.070039 B = 4911.283233 C = 5171.057767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.136 3.864 3 H 0.086 0.914 4 F -0.212 7.212 5 C -0.149 4.149 6 C -0.096 4.096 7 C -0.122 4.122 8 C -0.051 4.051 9 C -0.074 4.074 10 C -0.006 4.006 11 C -0.522 4.522 12 H 0.073 0.927 13 C 0.068 3.932 14 N -0.903 5.903 15 Si 0.878 3.122 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.265 1.265 19 C -0.123 4.123 20 C -0.102 4.102 21 H 0.075 0.925 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.118 0.882 25 H 0.124 0.876 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.017 0.983 29 H 0.013 0.987 30 H 0.263 0.737 31 H 0.125 0.875 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.009 10.776 -12.127 20.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.100 3.900 3 H 0.104 0.896 4 F -0.193 7.193 5 C -0.150 4.150 6 C -0.114 4.114 7 C -0.140 4.140 8 C -0.051 4.051 9 C -0.111 4.111 10 C -0.043 4.043 11 C -0.560 4.560 12 H 0.091 0.909 13 C -0.133 4.133 14 N -0.542 5.542 15 Si 0.705 3.295 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.189 1.189 19 C -0.141 4.141 20 C -0.120 4.120 21 H 0.094 0.906 22 H 0.085 0.915 23 H 0.087 0.913 24 H 0.136 0.864 25 H 0.142 0.858 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.035 0.965 29 H 0.031 0.969 30 H 0.073 0.927 31 H 0.143 0.857 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.848 10.656 -12.085 19.999 hybrid contribution 0.784 -0.085 -0.761 1.096 sum -11.063 10.571 -12.846 19.979 Atomic orbital electron populations 1.22373 0.93819 1.03776 1.03197 1.20302 0.94655 0.95094 0.79934 0.89578 1.92834 1.90371 1.83542 1.52503 1.20006 1.02891 0.95142 0.96927 1.20868 0.99470 0.93662 0.97369 1.21117 0.98871 1.00090 0.93928 1.20492 0.93970 0.93737 0.96944 1.20684 0.98968 0.98783 0.92656 1.19547 0.91153 0.95833 0.97763 1.21138 1.01723 1.34313 0.98855 0.90917 1.25003 0.97708 0.94676 0.95939 1.69913 1.19195 1.36780 1.28312 0.86804 0.80669 0.77665 0.84364 1.20246 1.21319 1.18945 1.21097 1.00456 0.94581 0.97953 1.20908 0.97605 0.99381 0.94123 0.90558 0.91480 0.91270 0.86382 0.85765 0.91517 0.91495 0.96453 0.96912 0.92701 0.85727 0.86302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 9.51 37.16 0.35 -1.15 16 2 C 0.14 1.49 4.18 -27.88 -0.12 1.37 16 3 H 0.09 0.77 7.89 -51.93 -0.41 0.36 16 4 F -0.21 -2.84 16.93 2.25 0.04 -2.80 16 5 C -0.15 -1.99 5.04 -104.62 -0.53 -2.52 16 6 C -0.10 -1.36 9.15 -39.59 -0.36 -1.72 16 7 C -0.12 -1.94 9.70 -39.58 -0.38 -2.33 16 8 C -0.05 -0.89 5.13 -104.62 -0.54 -1.42 16 9 C -0.07 -1.46 5.28 -27.88 -0.15 -1.60 16 10 C -0.01 -0.14 4.02 -27.88 -0.11 -0.25 16 11 C -0.52 -14.93 9.66 -34.44 -0.33 -15.26 16 12 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 13 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 14 N -0.90 -27.97 13.96 55.43 0.77 -27.19 16 15 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 18 H -0.26 -6.50 6.54 56.52 0.37 -6.13 16 19 C -0.12 -1.90 9.70 -39.58 -0.38 -2.29 16 20 C -0.10 -1.37 9.67 -39.58 -0.38 -1.75 16 21 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.07 0.61 7.71 -51.93 -0.40 0.21 16 24 H 0.12 1.47 7.89 -52.48 -0.41 1.06 16 25 H 0.12 1.86 8.06 -52.49 -0.42 1.43 16 26 H 0.07 1.28 8.08 -51.93 -0.42 0.86 16 27 H 0.07 1.29 8.09 -51.93 -0.42 0.88 16 28 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 29 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 30 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.12 1.25 7.95 -52.49 -0.42 0.84 16 LS Contribution 276.72 15.07 4.17 4.17 Total: -1.00 -31.19 276.72 -7.24 -38.43 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -4.53 Total: -3.00 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: -3.03 Total: -27.01 kcal Atomic # 7 Polarization: -27.97 SS G_CDS: 0.77 Total: -27.19 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.04 Total: -2.80 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.19 -7.24 -38.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260073806.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.913 kcal (2) G-P(sol) polarization free energy of solvation -31.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds