Wall clock time and date at job start Mon Mar 30 2020 02:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47606 * 2 1 4 4 F 1.39898 * 109.47039 * 239.99657 * 2 1 3 5 5 C 1.50706 * 109.47019 * 119.99859 * 2 1 3 6 6 C 1.38228 * 119.99983 * 65.21250 * 5 2 1 7 7 C 1.38238 * 120.00110 * 180.21781 * 6 5 2 8 8 C 1.38234 * 119.99675 * 359.52133 * 7 6 5 9 9 C 1.50702 * 120.00257 * 180.25732 * 8 7 6 10 10 C 1.53004 * 109.46774 * 90.00005 * 9 8 7 11 11 C 1.50702 * 109.47154 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99881 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00173 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99956 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 120.00182 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47180 * 89.99437 * 15 13 11 17 17 H 1.48493 * 109.47476 * 209.99833 * 15 13 11 18 18 H 1.48506 * 109.46985 * 330.00044 * 15 13 11 19 19 C 1.38235 * 120.00220 * 0.28720 * 8 7 6 20 20 C 1.38234 * 119.99892 * 244.99470 * 5 2 1 21 21 H 1.09003 * 109.47041 * 300.00466 * 1 2 3 22 22 H 1.08997 * 109.46890 * 60.00123 * 1 2 3 23 23 H 1.09001 * 109.47371 * 180.02562 * 1 2 3 24 24 H 1.08004 * 120.00281 * 0.02562 * 6 5 2 25 25 H 1.08002 * 120.00519 * 179.80752 * 7 6 5 26 26 H 1.08993 * 109.47429 * 210.00613 * 9 8 7 27 27 H 1.08998 * 109.46961 * 330.00864 * 9 8 7 28 28 H 1.08993 * 109.47638 * 300.00479 * 10 9 8 29 29 H 1.09003 * 109.47116 * 60.00528 * 10 9 8 30 30 H 0.97004 * 119.99932 * 180.02562 * 14 13 11 31 31 H 1.07996 * 120.00471 * 179.97438 * 19 8 7 32 32 H 1.08001 * 120.00324 * 0.02562 * 20 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 9 1.9963 -0.6596 -1.1422 5 6 2.0323 -0.7104 1.2305 6 6 1.7895 -2.0611 1.3964 7 6 2.2463 -2.7117 2.5272 8 6 2.9546 -2.0138 3.4875 9 6 3.4577 -2.7243 4.7176 10 6 4.8600 -3.2750 4.4507 11 6 5.3635 -3.9850 5.6809 12 1 4.7449 -4.0385 6.5647 13 6 6.6137 -4.5663 5.6784 14 7 7.0528 -5.1863 6.7518 15 14 7.6838 -4.4733 4.1501 16 1 8.5251 -3.2510 4.2086 17 1 8.5570 -5.6725 4.0835 18 1 6.8200 -4.4222 2.9433 19 6 3.2008 -0.6640 3.3198 20 6 2.7398 -0.0123 2.1912 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.2401 -2.6074 0.6439 25 1 2.0540 -3.7664 2.6583 26 1 3.4950 -2.0241 5.5520 27 1 2.7852 -3.5463 4.9629 28 1 4.8227 -3.9753 3.6163 29 1 5.5325 -2.4531 4.2053 30 1 7.9325 -5.5950 6.7501 31 1 3.7538 -0.1186 4.0702 32 1 2.9322 1.0424 2.0602 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260073806.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:02 Heat of formation + Delta-G solvation = -67.969011 kcal Electronic energy + Delta-G solvation = -14317.763633 eV Core-core repulsion = 11769.835632 eV Total energy + Delta-G solvation = -2547.928001 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.112 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.62915 -40.35536 -36.28493 -34.64328 -32.87143 -31.86703 -30.15792 -27.09161 -24.40385 -23.60435 -22.51645 -21.27967 -19.03216 -17.75686 -17.37486 -16.41657 -16.12465 -16.00171 -15.83525 -15.09157 -14.80205 -14.62714 -14.19582 -13.98594 -13.76145 -13.37141 -13.13100 -12.91030 -12.87327 -12.25109 -11.95562 -11.87317 -11.80392 -11.59868 -11.53364 -11.28018 -10.79169 -9.83691 -9.50691 -8.32265 -6.36380 0.33531 0.48805 1.32889 1.34839 1.47088 2.33332 2.78191 3.03091 3.47332 3.73708 3.88621 4.04817 4.10623 4.15081 4.26591 4.46708 4.56730 4.69684 4.70784 4.80702 4.89945 5.03437 5.12319 5.16022 5.20946 5.38751 5.41572 5.45708 5.58990 5.63875 5.83895 6.07681 6.24944 6.71206 7.28593 8.84437 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.046418 B = 0.005700 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.070039 B = 4911.283233 C = 5171.057767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.132 3.868 3 H 0.113 0.887 4 F -0.227 7.227 5 C -0.145 4.145 6 C -0.101 4.101 7 C -0.134 4.134 8 C -0.077 4.077 9 C -0.064 4.064 10 C 0.000 4.000 11 C -0.534 4.534 12 H 0.036 0.964 13 C 0.008 3.992 14 N -0.949 5.949 15 Si 0.947 3.053 16 H -0.265 1.265 17 H -0.281 1.281 18 H -0.254 1.254 19 C -0.132 4.132 20 C -0.098 4.098 21 H 0.086 0.914 22 H 0.082 0.918 23 H 0.062 0.938 24 H 0.133 0.867 25 H 0.124 0.876 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.014 0.986 29 H 0.016 0.984 30 H 0.267 0.733 31 H 0.131 0.869 32 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.436 12.608 -14.632 22.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.096 3.904 3 H 0.131 0.869 4 F -0.208 7.208 5 C -0.146 4.146 6 C -0.119 4.119 7 C -0.152 4.152 8 C -0.077 4.077 9 C -0.101 4.101 10 C -0.037 4.037 11 C -0.572 4.572 12 H 0.055 0.945 13 C -0.189 4.189 14 N -0.590 5.590 15 Si 0.770 3.230 16 H -0.190 1.190 17 H -0.206 1.206 18 H -0.177 1.177 19 C -0.150 4.150 20 C -0.116 4.116 21 H 0.105 0.895 22 H 0.101 0.899 23 H 0.081 0.919 24 H 0.151 0.849 25 H 0.142 0.858 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.033 0.967 29 H 0.034 0.966 30 H 0.076 0.924 31 H 0.149 0.851 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.293 12.498 -14.592 22.808 hybrid contribution 0.833 -0.629 0.058 1.045 sum -11.460 11.869 -14.534 21.987 Atomic orbital electron populations 1.22367 0.92048 1.03883 1.04569 1.20578 0.96076 0.95701 0.78059 0.86931 1.92809 1.90696 1.84014 1.53234 1.20400 1.01579 0.94884 0.97707 1.21081 0.99331 0.94457 0.96990 1.21206 0.99216 1.00330 0.94452 1.20268 0.96262 0.94741 0.96411 1.20442 0.96555 0.98782 0.94348 1.19441 0.93673 0.95353 0.95271 1.21490 1.01557 1.34653 0.99459 0.94544 1.25944 0.99321 0.94249 0.99347 1.70056 1.20001 1.38122 1.30777 0.85709 0.78789 0.78221 0.80273 1.18969 1.20643 1.17739 1.21267 1.00700 0.93960 0.99071 1.21250 0.96375 1.00980 0.92949 0.89472 0.89867 0.91855 0.84880 0.85805 0.91730 0.92070 0.96745 0.96584 0.92388 0.85139 0.82910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 9.51 71.98 0.68 -1.66 16 2 C 0.13 2.39 4.18 29.85 0.12 2.51 16 3 H 0.11 1.48 7.89 -2.39 -0.02 1.46 16 4 F -0.23 -5.40 16.93 44.97 0.76 -4.64 16 5 C -0.15 -3.42 5.04 -19.87 -0.10 -3.52 16 6 C -0.10 -2.66 9.15 22.27 0.20 -2.45 16 7 C -0.13 -4.15 9.70 22.27 0.22 -3.93 16 8 C -0.08 -2.60 5.13 -19.87 -0.10 -2.70 16 9 C -0.06 -2.56 5.28 29.85 0.16 -2.40 16 10 C 0.00 0.00 4.02 29.85 0.12 0.12 16 11 C -0.53 -31.34 9.66 25.60 0.25 -31.09 16 12 H 0.04 2.33 7.99 -2.91 -0.02 2.30 16 13 C 0.01 0.50 5.47 84.65 0.46 0.97 16 14 N -0.95 -60.15 13.96 21.45 0.30 -59.85 16 15 Si 0.95 45.42 27.47 68.60 1.88 47.30 16 16 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 17 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 18 H -0.25 -11.61 6.54 99.48 0.65 -10.96 16 19 C -0.13 -3.85 9.70 22.27 0.22 -3.63 16 20 C -0.10 -2.30 9.67 22.27 0.22 -2.08 16 21 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 22 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 23 H 0.06 0.95 7.71 -2.39 -0.02 0.93 16 24 H 0.13 3.03 7.89 -2.91 -0.02 3.01 16 25 H 0.12 3.69 8.06 -2.91 -0.02 3.67 16 26 H 0.06 2.55 8.08 -2.39 -0.02 2.53 16 27 H 0.06 2.45 8.09 -2.39 -0.02 2.43 16 28 H 0.01 0.69 7.20 -2.39 -0.02 0.68 16 29 H 0.02 0.75 7.57 -2.39 -0.02 0.74 16 30 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 31 H 0.13 3.55 8.06 -2.91 -0.02 3.52 16 32 H 0.15 2.51 7.95 -2.91 -0.02 2.49 16 Total: -1.00 -67.66 276.72 6.42 -61.24 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: 1.03 Total: 5.82 kcal Atomic # 6 Polarization: -52.32 SS G_CDS: 2.45 Total: -49.87 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: 0.30 Total: -59.85 kcal Atomic # 9 Polarization: -5.40 SS G_CDS: 0.76 Total: -4.64 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.88 Total: 47.30 kcal Total: -67.66 6.42 -61.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260073806.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.731 kcal (2) G-P(sol) polarization free energy of solvation -67.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds