Wall clock time and date at job start Mon Mar 30 2020 02:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46809 * 2 1 4 4 F 1.39898 * 109.47035 * 120.00021 * 2 1 3 5 5 C 1.52999 * 109.47437 * 240.00550 * 2 1 3 6 6 H 1.08996 * 109.47440 * 54.83865 * 5 2 1 7 7 C 1.50696 * 109.47214 * 174.84118 * 5 2 1 8 8 H 1.08009 * 119.99839 * 119.99375 * 7 5 2 9 9 C 1.37871 * 120.00075 * 300.27201 * 7 5 2 10 10 N 1.31511 * 119.99924 * 359.72511 * 9 7 5 11 11 Si 1.86804 * 120.00186 * 179.72545 * 9 7 5 12 12 H 1.48493 * 109.47300 * 90.00119 * 11 9 7 13 13 H 1.48504 * 109.46971 * 210.00106 * 11 9 7 14 14 H 1.48505 * 109.46949 * 329.99820 * 11 9 7 15 15 C 1.53001 * 109.46531 * 294.83816 * 5 2 1 16 16 C 1.50704 * 109.46960 * 175.23961 * 15 5 2 17 17 C 1.38240 * 119.99858 * 275.59911 * 16 15 5 18 18 C 1.38234 * 119.99638 * 179.76620 * 17 16 15 19 19 C 1.38225 * 120.00140 * 0.50542 * 18 17 16 20 20 C 1.38241 * 120.00310 * 359.74620 * 19 18 17 21 21 C 1.38231 * 119.99931 * 95.86707 * 16 15 5 22 22 H 1.09004 * 109.47385 * 186.14472 * 1 2 3 23 23 H 1.09002 * 109.47457 * 306.14448 * 1 2 3 24 24 H 1.09001 * 109.47610 * 66.14657 * 1 2 3 25 25 H 0.97003 * 119.99975 * 180.02562 * 10 9 7 26 26 H 1.08997 * 109.47560 * 295.23747 * 15 5 2 27 27 H 1.09005 * 109.47130 * 55.24502 * 15 5 2 28 28 H 1.08003 * 120.00190 * 359.97438 * 17 16 15 29 29 H 1.08004 * 119.99604 * 180.22583 * 18 17 16 30 30 H 1.08007 * 120.00092 * 179.72545 * 19 18 17 31 31 H 1.07996 * 119.99891 * 179.97438 * 20 19 18 32 32 H 1.07993 * 120.00233 * 0.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9963 -0.6595 1.1423 5 6 2.0400 -0.7211 -1.2493 6 1 1.6033 -0.2634 -2.1368 7 6 3.5416 -0.6114 -1.3147 8 1 4.1489 -1.5045 -1.3116 9 6 4.1402 0.6292 -1.3729 10 7 3.4007 1.7167 -1.3766 11 14 6.0019 0.7654 -1.4463 12 1 6.4430 0.7613 -2.8642 13 1 6.4315 2.0305 -0.7979 14 1 6.6110 -0.3871 -0.7349 15 6 1.6387 -2.1962 -1.1861 16 6 2.0380 -2.8807 -2.4679 17 6 1.2046 -2.8259 -3.5695 18 6 1.5731 -3.4497 -4.7467 19 6 2.7701 -4.1372 -4.8193 20 6 3.6012 -4.1964 -3.7162 21 6 3.2351 -3.5681 -2.5405 22 1 -0.3634 -1.0218 0.1100 23 1 -0.3634 0.6061 0.8299 24 1 -0.3634 0.4156 -0.9399 25 1 3.8219 2.5895 -1.4179 26 1 2.1431 -2.6744 -0.3465 27 1 0.5595 -2.2738 -1.0537 28 1 0.2671 -2.2928 -3.5113 29 1 0.9236 -3.4038 -5.6084 30 1 3.0560 -4.6283 -5.7377 31 1 4.5362 -4.7339 -3.7728 32 1 3.8840 -3.6150 -1.6785 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260225598.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:36 Heat of formation + Delta-G solvation = -61.714569 kcal Electronic energy + Delta-G solvation = -15197.596004 eV Core-core repulsion = 12649.939216 eV Total energy + Delta-G solvation = -2547.656788 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.112 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.07228 -40.05208 -36.77233 -33.94471 -32.34999 -31.62349 -29.52525 -26.99820 -24.63773 -23.29685 -22.23090 -20.87164 -18.53851 -17.59233 -16.89139 -16.38604 -16.03559 -15.84444 -15.51854 -15.42966 -14.39093 -14.23036 -13.98183 -13.69359 -13.44998 -13.10829 -12.97875 -12.80114 -12.61722 -12.43228 -11.94381 -11.75089 -11.69307 -11.56790 -11.08049 -10.69873 -10.43022 -9.65006 -9.31838 -8.11582 -6.20170 0.65496 0.67888 1.38142 1.39704 1.48651 2.42392 3.05485 3.18006 4.10322 4.11384 4.17681 4.29764 4.39432 4.45053 4.47503 4.56495 4.76371 4.81299 4.87678 4.99002 5.03700 5.18179 5.29761 5.31618 5.37827 5.63484 5.67335 5.73625 5.78426 5.92947 6.03903 6.31674 6.35083 6.85267 7.45899 8.93342 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.020746 B = 0.012013 C = 0.008765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.327948 B = 2330.175026 C = 3193.835868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.075 3.925 3 H 0.081 0.919 4 F -0.241 7.241 5 C 0.036 3.964 6 H 0.021 0.979 7 C -0.510 4.510 8 H 0.055 0.945 9 C 0.013 3.987 10 N -0.920 5.920 11 Si 0.944 3.056 12 H -0.277 1.277 13 H -0.284 1.284 14 H -0.271 1.271 15 C -0.068 4.068 16 C -0.065 4.065 17 C -0.138 4.138 18 C -0.124 4.124 19 C -0.139 4.139 20 C -0.130 4.130 21 C -0.129 4.129 22 H 0.068 0.932 23 H 0.061 0.939 24 H 0.071 0.929 25 H 0.261 0.739 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.124 0.876 29 H 0.144 0.856 30 H 0.146 0.854 31 H 0.136 0.864 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.047 -8.109 -4.158 9.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.038 3.962 3 H 0.099 0.901 4 F -0.222 7.222 5 C 0.017 3.983 6 H 0.039 0.961 7 C -0.549 4.549 8 H 0.074 0.926 9 C -0.185 4.185 10 N -0.561 5.561 11 Si 0.770 3.230 12 H -0.203 1.203 13 H -0.210 1.210 14 H -0.196 1.196 15 C -0.105 4.105 16 C -0.065 4.065 17 C -0.156 4.156 18 C -0.142 4.142 19 C -0.157 4.157 20 C -0.147 4.147 21 C -0.147 4.147 22 H 0.087 0.913 23 H 0.080 0.920 24 H 0.090 0.910 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.142 0.858 29 H 0.162 0.838 30 H 0.163 0.837 31 H 0.154 0.846 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.013 -7.939 -4.130 9.808 hybrid contribution 1.178 0.569 0.256 1.333 sum -2.836 -7.369 -3.875 8.795 Atomic orbital electron populations 1.22328 0.94468 1.02722 1.02766 1.21886 0.93512 0.98107 0.82650 0.90093 1.92609 1.91083 1.84078 1.54432 1.19119 0.95446 0.90821 0.92909 0.96112 1.21473 0.92565 0.92222 1.48589 0.92633 1.25622 1.01828 0.95852 0.95218 1.69891 1.36173 0.97892 1.52163 0.85761 0.81662 0.77450 0.78116 1.20288 1.20964 1.19617 1.20615 0.99788 0.96112 0.94023 1.19980 0.94760 0.95498 0.96217 1.21206 1.00330 1.00715 0.93378 1.21385 0.97514 0.97620 0.97681 1.21374 0.94808 1.00553 0.98967 1.21370 1.00353 0.99917 0.93101 1.21142 0.96272 0.98520 0.98800 0.91281 0.91977 0.90981 0.92951 0.93059 0.91213 0.85783 0.83839 0.83669 0.84634 0.87495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.07 9.26 71.98 0.67 -5.40 16 2 C 0.08 3.55 3.45 30.59 0.11 3.66 16 3 H 0.08 4.35 5.94 -2.38 -0.01 4.34 16 4 F -0.24 -11.93 16.29 44.97 0.73 -11.19 16 5 C 0.04 1.74 1.63 -11.54 -0.02 1.72 16 6 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 7 C -0.51 -27.81 7.85 25.60 0.20 -27.61 16 8 H 0.06 3.02 6.14 -2.91 -0.02 3.01 16 9 C 0.01 0.70 5.29 84.65 0.45 1.14 16 10 N -0.92 -52.40 11.28 21.44 0.24 -52.16 16 11 Si 0.94 44.44 29.54 68.60 2.03 46.47 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 13 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 14 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 15 C -0.07 -2.83 4.41 29.85 0.13 -2.70 16 16 C -0.06 -2.52 4.73 -19.86 -0.09 -2.62 16 17 C -0.14 -4.74 9.72 22.27 0.22 -4.53 16 18 C -0.12 -3.61 10.05 22.27 0.22 -3.39 16 19 C -0.14 -3.90 10.05 22.27 0.22 -3.68 16 20 C -0.13 -4.07 10.05 22.27 0.22 -3.85 16 21 C -0.13 -4.87 8.57 22.27 0.19 -4.68 16 22 H 0.07 2.28 6.77 -2.39 -0.02 2.26 16 23 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 25 H 0.26 14.26 8.31 -92.71 -0.77 13.48 16 26 H 0.05 2.22 7.74 -2.39 -0.02 2.20 16 27 H 0.07 2.56 6.47 -2.38 -0.02 2.54 16 28 H 0.12 3.88 8.06 -2.91 -0.02 3.85 16 29 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 30 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 31 H 0.14 3.51 8.06 -2.91 -0.02 3.48 16 32 H 0.11 4.13 7.53 -2.91 -0.02 4.11 16 Total: -1.00 -60.72 269.02 6.61 -54.11 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 1.09 Total: 14.71 kcal Atomic # 6 Polarization: -54.45 SS G_CDS: 2.52 Total: -51.93 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: 0.24 Total: -52.16 kcal Atomic # 9 Polarization: -11.93 SS G_CDS: 0.73 Total: -11.19 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -60.72 6.61 -54.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260225598.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.604 kcal (2) G-P(sol) polarization free energy of solvation -60.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds