Wall clock time and date at job start Mon Mar 30 2020 02:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47101 * 2 1 4 4 F 1.39898 * 109.46763 * 119.99876 * 2 1 3 5 5 C 1.52994 * 109.47179 * 239.99733 * 2 1 3 6 6 H 1.09003 * 109.47443 * 57.08904 * 5 2 1 7 7 C 1.50703 * 109.47601 * 297.08707 * 5 2 1 8 8 H 1.07996 * 119.99475 * 329.14759 * 7 5 2 9 9 C 1.37871 * 120.00215 * 149.14901 * 7 5 2 10 10 N 1.31517 * 119.99726 * 184.68196 * 9 7 5 11 11 Si 1.86800 * 120.00329 * 4.68878 * 9 7 5 12 12 H 1.48503 * 109.47142 * 84.85224 * 11 9 7 13 13 H 1.48492 * 109.47213 * 204.85851 * 11 9 7 14 14 H 1.48500 * 109.46922 * 324.85645 * 11 9 7 15 15 C 1.53004 * 109.47322 * 177.08545 * 5 2 1 16 16 C 1.50701 * 109.46855 * 295.00315 * 15 5 2 17 17 C 1.38242 * 119.99785 * 269.71856 * 16 15 5 18 18 C 1.38234 * 119.99770 * 180.32156 * 17 16 15 19 19 C 1.38236 * 120.00239 * 359.95704 * 18 17 16 20 20 C 1.38241 * 119.99868 * 0.02562 * 19 18 17 21 21 C 1.38232 * 119.99968 * 359.97438 * 20 19 18 22 22 H 1.09000 * 109.47551 * 186.34909 * 1 2 3 23 23 H 1.09001 * 109.47369 * 306.35524 * 1 2 3 24 24 H 1.09009 * 109.46744 * 66.34975 * 1 2 3 25 25 H 0.96999 * 119.99785 * 180.02562 * 10 9 7 26 26 H 1.09000 * 109.47408 * 175.00174 * 15 5 2 27 27 H 1.08996 * 109.46870 * 54.99858 * 15 5 2 28 28 H 1.07991 * 119.99965 * 0.28506 * 17 16 15 29 29 H 1.07998 * 119.99875 * 179.97438 * 18 17 16 30 30 H 1.08000 * 120.00347 * 179.97438 * 19 18 17 31 31 H 1.08002 * 119.99514 * 179.97438 * 20 19 18 32 32 H 1.07999 * 119.99795 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 9 1.9963 -0.6595 1.1423 5 6 2.0400 -0.7213 -1.2492 6 1 1.6347 -0.2385 -2.1385 7 6 1.5975 -2.1615 -1.2136 8 1 1.4744 -2.6652 -0.2663 9 6 1.3500 -2.8358 -2.3904 10 7 0.8760 -4.0622 -2.3583 11 14 1.6882 -2.0079 -4.0304 12 1 3.1176 -2.1879 -4.3904 13 1 0.8327 -2.6190 -5.0791 14 1 1.3830 -0.5584 -3.9253 15 6 3.5683 -0.6581 -1.2864 16 6 4.0080 0.7745 -1.4457 17 6 4.1915 1.3048 -2.7091 18 6 4.6012 2.6169 -2.8551 19 6 4.8267 3.3990 -1.7378 20 6 4.6429 2.8688 -0.4744 21 6 4.2331 1.5568 -0.3284 22 1 -0.3634 -1.0213 0.1136 23 1 -0.3634 0.6092 0.8276 24 1 -0.3633 0.4123 -0.9414 25 1 0.7022 -4.5368 -3.1862 26 1 3.9359 -1.2466 -2.1270 27 1 3.9713 -1.0606 -0.3571 28 1 4.0152 0.6938 -3.5819 29 1 4.7450 3.0311 -3.8421 30 1 5.1473 4.4240 -1.8519 31 1 4.8195 3.4798 0.3985 32 1 4.0900 1.1424 0.6586 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260225601.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:38 Heat of formation + Delta-G solvation = -46.584707 kcal Electronic energy + Delta-G solvation = -15267.439695 eV Core-core repulsion = 12720.438987 eV Total energy + Delta-G solvation = -2547.000708 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.112 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -46.58456 -38.97114 -35.12086 -32.14003 -31.10304 -30.57323 -28.40878 -25.08981 -23.08475 -22.18280 -20.86753 -19.23708 -17.26305 -16.35318 -15.16134 -14.95669 -14.84108 -14.38210 -13.99943 -13.75453 -13.09960 -12.82796 -12.69660 -12.33564 -11.95252 -11.77466 -11.33609 -11.30650 -11.04959 -10.95199 -10.49994 -10.42253 -9.93396 -9.79816 -9.20400 -9.04951 -8.67557 -8.59386 -8.18903 -6.11837 -4.10729 1.69560 1.71392 3.23045 3.30334 3.32214 4.11904 4.35798 5.14475 5.19225 5.20429 5.33691 5.50774 5.60848 5.72754 5.82127 5.87303 5.90896 5.94115 6.19601 6.31447 6.40437 6.51920 6.66791 6.76929 6.78266 6.79143 6.87122 7.03917 7.19245 7.30887 7.41418 7.68774 8.47139 8.97390 9.49351 11.00998 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.026369 B = 0.011427 C = 0.008885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.595696 B = 2449.771702 C = 3150.582876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.100 3.900 3 H 0.058 0.942 4 F -0.219 7.219 5 C -0.010 4.010 6 H 0.053 0.947 7 C -0.504 4.504 8 H 0.081 0.919 9 C 0.074 3.926 10 N -0.896 5.896 11 Si 0.866 3.134 12 H -0.273 1.273 13 H -0.289 1.289 14 H -0.261 1.261 15 C -0.086 4.086 16 C -0.063 4.063 17 C -0.126 4.126 18 C -0.120 4.120 19 C -0.141 4.141 20 C -0.121 4.121 21 C -0.123 4.123 22 H 0.079 0.921 23 H 0.042 0.958 24 H 0.061 0.939 25 H 0.264 0.736 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.998 12.608 0.477 13.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.075 0.925 4 F -0.201 7.201 5 C -0.029 4.029 6 H 0.071 0.929 7 C -0.541 4.541 8 H 0.099 0.901 9 C -0.128 4.128 10 N -0.534 5.534 11 Si 0.694 3.306 12 H -0.199 1.199 13 H -0.215 1.215 14 H -0.186 1.186 15 C -0.124 4.124 16 C -0.063 4.063 17 C -0.144 4.144 18 C -0.138 4.138 19 C -0.159 4.159 20 C -0.139 4.139 21 C -0.141 4.141 22 H 0.098 0.902 23 H 0.061 0.939 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.134 0.866 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.936 12.415 0.386 13.365 hybrid contribution 0.214 0.298 -0.993 1.059 sum 5.150 12.713 -0.608 13.730 Atomic orbital electron populations 1.22217 0.95447 1.03753 1.00868 1.21562 0.94270 0.94081 0.83674 0.92460 1.92709 1.90307 1.83780 1.53261 1.19865 0.90724 0.98145 0.94167 0.92897 1.20888 1.44490 0.93724 0.95008 0.90141 1.25023 0.94315 0.94761 0.98720 1.69899 1.44200 1.11574 1.27726 0.87043 0.78813 0.80419 0.84323 1.19906 1.21522 1.18580 1.21159 0.99301 0.89281 1.02638 1.20489 0.95284 0.97855 0.92685 1.21118 1.00477 0.95493 0.97274 1.21072 1.00127 0.94321 0.98312 1.20987 1.02613 0.99436 0.92837 1.21089 1.00201 0.95580 0.97034 1.21159 1.00190 0.94042 0.98753 0.90183 0.93867 0.91984 0.92588 0.91541 0.90997 0.86588 0.86699 0.86820 0.86638 0.86027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.17 9.32 37.16 0.35 -2.82 16 2 C 0.10 2.05 3.28 -26.73 -0.09 1.97 16 3 H 0.06 1.07 6.06 -51.93 -0.31 0.75 16 4 F -0.22 -4.84 16.01 2.25 0.04 -4.81 16 5 C -0.01 -0.22 1.23 -91.77 -0.11 -0.34 16 6 H 0.05 1.22 5.36 -51.93 -0.28 0.94 16 7 C -0.50 -13.63 7.66 -34.44 -0.26 -13.89 16 8 H 0.08 2.43 7.73 -52.49 -0.41 2.03 16 9 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 10 N -0.90 -26.80 13.96 55.43 0.77 -26.03 16 11 Si 0.87 20.70 26.52 -169.99 -4.51 16.19 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.26 -5.90 6.08 56.52 0.34 -5.56 16 15 C -0.09 -1.79 4.62 -27.88 -0.13 -1.92 16 16 C -0.06 -1.14 4.72 -104.62 -0.49 -1.63 16 17 C -0.13 -2.13 9.70 -39.58 -0.38 -2.52 16 18 C -0.12 -1.74 10.05 -39.58 -0.40 -2.13 16 19 C -0.14 -1.89 10.05 -39.58 -0.40 -2.28 16 20 C -0.12 -1.69 10.05 -39.58 -0.40 -2.09 16 21 C -0.12 -2.00 7.91 -39.58 -0.31 -2.32 16 22 H 0.08 1.71 7.53 -51.93 -0.39 1.32 16 23 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.07 1.43 7.07 -51.93 -0.37 1.07 16 27 H 0.07 1.51 7.69 -51.93 -0.40 1.11 16 28 H 0.12 1.96 8.06 -52.49 -0.42 1.54 16 29 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 32 H 0.12 1.93 8.01 -52.49 -0.42 1.51 16 LS Contribution 267.10 15.07 4.03 4.03 Total: -1.00 -29.05 267.10 -6.71 -35.76 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -4.31 Total: 2.87 kcal Atomic # 6 Polarization: -25.28 SS G_CDS: -2.73 Total: -28.01 kcal Atomic # 7 Polarization: -26.80 SS G_CDS: 0.77 Total: -26.03 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.04 Total: -4.81 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.51 Total: 16.19 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.05 -6.71 -35.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260225601.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.823 kcal (2) G-P(sol) polarization free energy of solvation -29.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds