Wall clock time and date at job start Mon Mar 30 2020 02:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47450 * 2 1 4 4 F 1.39892 * 109.47194 * 120.00156 * 2 1 3 5 5 C 1.50708 * 109.47119 * 239.99986 * 2 1 3 6 6 C 1.38233 * 119.99709 * 114.99929 * 5 2 1 7 7 C 1.38239 * 119.99592 * 179.97438 * 6 5 2 8 8 C 1.38234 * 120.00111 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00001 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.47247 * 359.97438 * 9 8 7 11 11 C 1.53006 * 109.46866 * 119.99777 * 9 8 7 12 12 C 1.50697 * 109.46956 * 239.99662 * 9 8 7 13 13 H 1.07994 * 120.00496 * 0.02562 * 12 9 8 14 14 C 1.37887 * 119.99690 * 180.02562 * 12 9 8 15 15 N 1.31507 * 120.00093 * 359.97438 * 14 12 9 16 16 Si 1.86800 * 119.99676 * 180.02562 * 14 12 9 17 17 H 1.48508 * 109.47028 * 90.00202 * 16 14 12 18 18 H 1.48493 * 109.46961 * 209.99772 * 16 14 12 19 19 H 1.48498 * 109.47538 * 330.00225 * 16 14 12 20 20 C 1.38238 * 119.99729 * 0.27026 * 8 7 6 21 21 C 1.38232 * 120.00436 * 359.51689 * 20 8 7 22 22 H 1.08997 * 109.47450 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46900 * 300.00429 * 1 2 3 24 24 H 1.09004 * 109.47174 * 59.99837 * 1 2 3 25 25 H 1.08001 * 120.00481 * 359.97438 * 6 5 2 26 26 H 1.07995 * 120.00011 * 180.02562 * 7 6 5 27 27 H 1.09001 * 109.47002 * 179.97438 * 11 9 8 28 28 H 1.08993 * 109.46955 * 300.00219 * 11 9 8 29 29 H 1.09000 * 109.47050 * 60.00048 * 11 9 8 30 30 H 0.96999 * 120.00118 * 179.97438 * 15 14 12 31 31 H 1.08003 * 119.99587 * 179.73022 * 20 8 7 32 32 H 1.07991 * 120.00708 * 180.27081 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 9 1.9963 -0.6595 1.1422 5 6 2.0323 -0.7104 -1.2305 6 6 2.7397 -0.0123 -2.1913 7 6 3.2010 -0.6641 -3.3197 8 6 2.9553 -2.0141 -3.4871 9 6 3.4576 -2.7245 -4.7176 10 1 3.9870 -2.0165 -5.3552 11 6 4.4087 -3.8495 -4.3043 12 6 2.2907 -3.3056 -5.4736 13 1 1.2858 -3.1733 -5.1007 14 6 2.5060 -4.0061 -6.6416 15 7 3.7296 -4.1668 -7.0959 16 14 1.0595 -4.7258 -7.5791 17 1 0.5609 -3.7294 -8.5610 18 1 1.4945 -5.9516 -8.2955 19 1 -0.0269 -5.0684 -6.6265 20 6 2.2435 -2.7111 -2.5287 21 6 1.7860 -2.0603 -1.3981 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 2.9320 1.0424 -2.0603 26 1 3.7539 -0.1188 -4.0701 27 1 4.7717 -4.3636 -5.1942 28 1 5.2527 -3.4292 -3.7574 29 1 3.8790 -4.5574 -3.6668 30 1 3.8811 -4.6599 -7.9174 31 1 2.0478 -3.7649 -2.6616 32 1 1.2338 -2.6058 -0.6473 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260277535.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:53 Heat of formation + Delta-G solvation = -61.752930 kcal Electronic energy + Delta-G solvation = -14692.607129 eV Core-core repulsion = 12144.948677 eV Total energy + Delta-G solvation = -2547.658452 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.112 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.58656 -40.28874 -36.56030 -34.21110 -32.32917 -31.72619 -29.24437 -27.23125 -25.00990 -23.76026 -22.47083 -21.08885 -18.34044 -17.80426 -17.19366 -16.79644 -15.95279 -15.84268 -15.50018 -15.06678 -14.60245 -14.21293 -13.90326 -13.73496 -13.50945 -13.17517 -13.03498 -12.84689 -12.66814 -12.32688 -12.23455 -12.03493 -11.85222 -11.60040 -11.17261 -11.01200 -10.48812 -9.72900 -9.34619 -8.11513 -6.25669 0.51095 0.59666 1.40299 1.41354 1.51528 2.41425 2.94635 3.16501 3.55087 3.78639 3.94259 4.19739 4.23520 4.30654 4.35389 4.66853 4.71595 4.83690 4.85486 4.97754 5.06858 5.15632 5.22470 5.26921 5.28533 5.51177 5.61258 5.66664 5.68798 6.01942 6.08868 6.21312 6.35796 6.82779 7.42196 8.93097 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.042788 B = 0.006637 C = 0.006243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.239479 B = 4217.992357 C = 4483.670521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.137 3.863 3 H 0.114 0.886 4 F -0.225 7.225 5 C -0.154 4.154 6 C -0.096 4.096 7 C -0.145 4.145 8 C -0.051 4.051 9 C 0.068 3.932 10 H 0.006 0.994 11 C -0.122 4.122 12 C -0.522 4.522 13 H 0.051 0.949 14 C 0.014 3.986 15 N -0.917 5.917 16 Si 0.955 3.045 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.269 1.269 20 C -0.128 4.128 21 C -0.103 4.103 22 H 0.059 0.941 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.153 0.847 26 H 0.121 0.879 27 H 0.060 0.940 28 H 0.024 0.976 29 H 0.030 0.970 30 H 0.262 0.738 31 H 0.110 0.890 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.845 8.230 11.648 15.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.101 3.899 3 H 0.132 0.868 4 F -0.206 7.206 5 C -0.154 4.154 6 C -0.114 4.114 7 C -0.163 4.163 8 C -0.051 4.051 9 C 0.049 3.951 10 H 0.025 0.975 11 C -0.179 4.179 12 C -0.560 4.560 13 H 0.069 0.931 14 C -0.185 4.185 15 N -0.556 5.556 16 Si 0.780 3.220 17 H -0.201 1.201 18 H -0.207 1.207 19 H -0.194 1.194 20 C -0.146 4.146 21 C -0.121 4.121 22 H 0.079 0.921 23 H 0.104 0.896 24 H 0.102 0.898 25 H 0.170 0.830 26 H 0.139 0.861 27 H 0.079 0.921 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.128 0.872 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.741 8.130 11.535 14.887 hybrid contribution -0.347 -0.826 -0.946 1.303 sum -5.088 7.304 10.589 13.833 Atomic orbital electron populations 1.22368 0.92392 1.03713 1.04453 1.20508 0.95803 0.95632 0.77970 0.86798 1.92797 1.90661 1.84049 1.53141 1.20317 1.02364 0.94687 0.98020 1.21185 0.96642 1.00654 0.92937 1.21246 1.02135 0.94081 0.98879 1.20527 0.94588 0.94462 0.95505 1.17791 0.94436 0.93265 0.89559 0.97535 1.21627 0.97336 0.99019 0.99967 1.21375 0.92917 1.34128 1.07584 0.93101 1.25727 0.98128 0.96519 0.98103 1.70004 1.21104 1.42226 1.22294 0.85606 0.79713 0.77965 0.78709 1.20126 1.20703 1.19385 1.21005 0.99151 1.00079 0.94334 1.21048 0.99446 0.94638 0.96924 0.92147 0.89580 0.89838 0.82963 0.86100 0.92113 0.95745 0.95083 0.92854 0.87239 0.85249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 9.51 71.98 0.68 -2.46 16 2 C 0.14 3.04 4.18 29.85 0.12 3.16 16 3 H 0.11 1.90 7.88 -2.39 -0.02 1.88 16 4 F -0.23 -6.05 16.93 44.97 0.76 -5.29 16 5 C -0.15 -4.49 5.04 -19.86 -0.10 -4.59 16 6 C -0.10 -2.86 9.67 22.27 0.22 -2.64 16 7 C -0.15 -5.42 9.67 22.27 0.22 -5.20 16 8 C -0.05 -2.22 4.74 -19.87 -0.09 -2.31 16 9 C 0.07 3.49 2.48 -12.29 -0.03 3.46 16 10 H 0.01 0.36 7.88 -2.39 -0.02 0.34 16 11 C -0.12 -6.06 8.79 71.98 0.63 -5.43 16 12 C -0.52 -28.93 8.24 25.60 0.21 -28.72 16 13 H 0.05 2.81 7.59 -2.91 -0.02 2.79 16 14 C 0.01 0.77 5.30 84.66 0.45 1.22 16 15 N -0.92 -52.90 11.32 21.45 0.24 -52.65 16 16 Si 0.95 43.64 29.54 68.60 2.03 45.67 16 17 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 20 C -0.13 -5.15 8.70 22.27 0.19 -4.95 16 21 C -0.10 -3.43 9.15 22.27 0.20 -3.23 16 22 H 0.06 1.21 7.70 -2.39 -0.02 1.19 16 23 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.15 3.28 7.95 -2.91 -0.02 3.26 16 26 H 0.12 4.30 7.95 -2.91 -0.02 4.28 16 27 H 0.06 3.31 6.07 -2.39 -0.01 3.30 16 28 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.03 1.47 7.41 -2.39 -0.02 1.45 16 30 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 31 H 0.11 4.59 7.59 -2.91 -0.02 4.57 16 32 H 0.13 3.80 7.88 -2.92 -0.02 3.77 16 Total: -1.00 -61.48 273.20 6.83 -54.65 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: 1.09 Total: 9.31 kcal Atomic # 6 Polarization: -54.40 SS G_CDS: 2.70 Total: -51.70 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: 0.24 Total: -52.65 kcal Atomic # 9 Polarization: -6.05 SS G_CDS: 0.76 Total: -5.29 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -61.48 6.83 -54.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260277535.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.100 kcal (2) G-P(sol) polarization free energy of solvation -61.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds