Wall clock time and date at job start Mon Mar 30 2020 02:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47047 * 2 1 4 4 C 1.53002 * 109.47276 * 240.00416 * 2 1 3 5 5 C 1.50704 * 109.47477 * 120.00031 * 2 1 3 6 6 C 1.38739 * 120.68328 * 0.02562 * 5 2 1 7 7 N 1.32024 * 119.32943 * 179.71777 * 6 5 2 8 8 C 1.33444 * 120.83555 * 0.28186 * 7 6 5 9 9 C 1.41588 * 119.25474 * 179.97438 * 8 7 6 10 10 H 1.07995 * 119.99649 * 179.97438 * 9 8 7 11 11 C 1.40061 * 119.99850 * 359.97438 * 9 8 7 12 12 N 1.30686 * 119.99844 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99620 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47054 * 90.00206 * 13 11 9 15 15 H 1.48503 * 109.47006 * 209.99789 * 13 11 9 16 16 H 1.48498 * 109.47686 * 329.99755 * 13 11 9 17 17 N 1.33436 * 121.49180 * 0.02562 * 8 7 6 18 18 C 1.32386 * 120.59493 * 359.97438 * 17 8 7 19 19 O 1.35503 * 120.44214 * 180.02562 * 18 17 8 20 20 H 1.08997 * 109.47068 * 299.99656 * 1 2 3 21 21 H 1.08998 * 109.46872 * 59.99675 * 1 2 3 22 22 H 1.08996 * 109.46580 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47023 * 179.97438 * 3 2 1 24 24 H 1.08998 * 109.47550 * 299.99910 * 3 2 1 25 25 H 1.08997 * 109.46906 * 60.00244 * 3 2 1 26 26 H 1.09004 * 109.46770 * 299.99836 * 4 2 1 27 27 H 1.09003 * 109.47014 * 59.99719 * 4 2 1 28 28 H 1.09003 * 109.47220 * 179.97438 * 4 2 1 29 29 H 1.08002 * 120.33952 * 359.97438 * 6 5 2 30 30 H 0.97004 * 120.00035 * 180.02562 * 12 11 9 31 31 H 0.96700 * 114.00040 * 89.99762 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2305 6 6 1.1436 -1.2435 2.1527 7 7 1.6130 -1.8654 3.2185 8 6 2.9271 -1.9809 3.4196 9 6 3.3939 -2.6542 4.5744 10 1 4.4549 -2.7550 4.7488 11 6 2.4795 -3.1894 5.4905 12 7 1.1956 -3.0677 5.2791 13 14 3.0954 -4.0782 7.0137 14 1 3.2580 -3.1045 8.1231 15 1 2.1141 -5.1202 7.4094 16 1 4.4035 -4.7165 6.7195 17 7 3.8113 -1.4755 2.5574 18 6 3.4043 -0.8405 1.4694 19 8 4.3048 -0.3289 0.5957 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9564 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6767 -1.7489 -1.2493 27 1 1.6767 -0.2073 -2.1393 28 1 3.1301 -0.7208 -1.2495 29 1 0.0784 -1.1544 1.9983 30 1 0.5624 -3.4381 5.9138 31 1 4.5673 -0.9432 -0.1034 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260278415.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:24 Heat of formation + Delta-G solvation = -9.563278 kcal Electronic energy + Delta-G solvation = -15333.206593 eV Core-core repulsion = 12807.731216 eV Total energy + Delta-G solvation = -2525.475377 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.59925 -36.67754 -35.89048 -33.50099 -31.27713 -29.30311 -27.01703 -26.74333 -26.14124 -22.27356 -22.13484 -18.82706 -18.45000 -16.58060 -16.32209 -15.19509 -14.79400 -14.36301 -13.76479 -13.49973 -13.05287 -12.47990 -12.29110 -11.79085 -11.62306 -11.54361 -11.25940 -11.24171 -11.15354 -11.05428 -10.67521 -10.46482 -10.31940 -10.08263 -9.39720 -8.96525 -8.76727 -7.78053 -7.35526 -6.58276 -4.74614 2.50747 2.77019 3.04413 3.07744 3.10990 3.86442 4.53978 4.76999 5.36883 5.46447 5.50259 5.85877 5.88526 5.99562 6.03895 6.07820 6.20564 6.29193 6.31102 6.34801 6.51515 6.56811 6.72454 6.82958 6.94539 7.03280 7.25120 7.49679 8.14210 8.18031 8.54037 8.65643 9.03627 10.09376 10.24598 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.049052 B = 0.008054 C = 0.007265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.689788 B = 3475.910993 C = 3853.029013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.009 3.991 3 C -0.136 4.136 4 C -0.135 4.135 5 C -0.337 4.337 6 C 0.167 3.833 7 N -0.511 5.511 8 C 0.404 3.596 9 C -0.399 4.399 10 H 0.093 0.907 11 C 0.066 3.934 12 N -0.710 5.710 13 Si 0.919 3.081 14 H -0.267 1.267 15 H -0.275 1.275 16 H -0.259 1.259 17 N -0.610 5.610 18 C 0.368 3.632 19 O -0.491 6.491 20 H 0.054 0.946 21 H 0.046 0.954 22 H 0.054 0.946 23 H 0.066 0.934 24 H 0.040 0.960 25 H 0.045 0.955 26 H 0.048 0.952 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.134 0.866 30 H 0.276 0.724 31 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.519 2.017 -6.690 7.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.008 3.992 3 C -0.193 4.193 4 C -0.193 4.193 5 C -0.348 4.348 6 C -0.007 4.007 7 N -0.228 5.228 8 C 0.168 3.832 9 C -0.434 4.434 10 H 0.111 0.889 11 C -0.161 4.161 12 N -0.331 5.331 13 Si 0.743 3.257 14 H -0.192 1.192 15 H -0.200 1.200 16 H -0.183 1.183 17 N -0.340 5.340 18 C 0.176 3.824 19 O -0.297 6.297 20 H 0.073 0.927 21 H 0.065 0.935 22 H 0.073 0.927 23 H 0.085 0.915 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.152 0.848 30 H 0.087 0.913 31 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -1.409 1.958 -5.389 5.904 hybrid contribution -0.041 -0.253 -0.456 0.523 sum -1.450 1.705 -5.845 6.259 Atomic orbital electron populations 1.21885 0.95555 1.01298 1.00819 1.18832 0.94009 0.94061 0.92318 1.21909 1.02180 0.95373 0.99845 1.21875 1.00842 0.99862 0.96679 1.20773 0.93793 1.17255 1.03017 1.22900 0.98739 0.90179 0.88880 1.69380 1.15420 1.19120 1.18915 1.19745 0.83317 0.89118 0.91026 1.19384 0.94984 1.27976 1.01034 0.88911 1.26101 0.94571 0.95670 0.99756 1.70136 1.01967 1.29068 1.31957 0.86129 0.79841 0.79300 0.80449 1.19206 1.19957 1.18294 1.68194 1.41319 1.18103 1.06359 1.19074 0.85356 0.89842 0.88175 1.84663 1.62888 1.41085 1.41101 0.92692 0.93484 0.92742 0.91471 0.94124 0.93597 0.93290 0.93556 0.92963 0.84825 0.91303 0.76184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 7.15 37.16 0.27 -1.82 16 2 C 0.01 0.16 0.75 -155.66 -0.12 0.04 16 3 C -0.14 -2.22 8.27 37.16 0.31 -1.91 16 4 C -0.14 -2.00 8.27 37.16 0.31 -1.69 16 5 C -0.34 -7.32 4.80 -103.83 -0.50 -7.82 16 6 C 0.17 3.95 10.23 -17.28 -0.18 3.77 16 7 N -0.51 -14.09 7.87 -12.71 -0.10 -14.19 16 8 C 0.40 11.52 7.37 -158.33 -1.17 10.36 16 9 C -0.40 -11.00 9.38 -37.62 -0.35 -11.35 16 10 H 0.09 2.47 7.85 -52.49 -0.41 2.06 16 11 C 0.07 1.67 5.50 -17.36 -0.10 1.57 16 12 N -0.71 -18.54 11.42 55.55 0.63 -17.91 16 13 Si 0.92 18.47 29.56 -169.99 -5.02 13.44 16 14 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 15 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 16 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 17 N -0.61 -16.60 10.38 -12.70 -0.13 -16.73 16 18 C 0.37 8.66 7.44 -16.71 -0.12 8.53 16 19 O -0.49 -9.65 10.30 -18.20 -0.19 -9.84 16 20 H 0.05 0.84 7.56 -51.93 -0.39 0.45 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.05 0.82 7.56 -51.93 -0.39 0.42 16 23 H 0.07 1.17 6.22 -51.93 -0.32 0.84 16 24 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.74 5.50 -51.93 -0.29 0.45 16 29 H 0.13 2.79 6.05 -52.49 -0.32 2.48 16 30 H 0.28 6.45 8.29 -40.82 -0.34 6.11 16 31 H 0.38 5.78 7.68 45.56 0.35 6.13 16 LS Contribution 257.41 15.07 3.88 3.88 Total: -1.00 -30.50 257.41 -5.60 -36.10 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -3.02 Total: 5.56 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -1.65 Total: -0.32 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: 0.40 Total: -48.83 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -0.19 Total: -9.84 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.02 Total: 13.44 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.50 -5.60 -36.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260278415.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.540 kcal (2) G-P(sol) polarization free energy of solvation -30.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds